An ideal I is robust if its universal Gröbner basis is a minimal generating set for this ideal. In this paper, we generalize the meaning of robust ideals. An ideal is defined as generalized robust if its universal Gröbner basis is equal to its universal Markov basis. This article consists of two parts. In the first one, we study the generalized robustness on toric ideals of a graph G. We prove that a toric graph ideal is generalized robust if and only if its universal Markov basis is equal to the Graver basis of the ideal. Furthermore, we give a graph theoretical characterization of generalized robust graph ideals, which is based on terms of graph theoretical properties of the circuits of the graph G. In the second part, we go on to describe the general case of toric ideals, in which we prove that a robust toric ideal has a unique minimal system of generators, or in other words, all of its minimal generators are indispensable.
In this paper, we study toric ideals generated by circuits. For toric ideals which have squarefree quadratic initial ideals, a sufficient condition to be generated by circuits is given. In particular, squarefree Veronese subrings, the second Veronese subrings and configurations arising from root systems satisfy the condition. In addition, we study toric ideals of finite graphs and characterize the graphs whose toric ideals are generated by circuits u -v such that either u or v is squarefree. There exists several classes of graphs whose toric ideals satisfy this condition and whose toric rings …
Let G be a finite simple graph. In this paper we will show that the binomial edge ideal of G, JG is toric if and only if each connected component of G is complete and in this case it is the sum of toric ideal associated to bipartite complete graphs.
The toric ring together with the toric ideal arising from a nested configuration is studied, with particular attention given to the algebraic study of normality of the toric ring as well as the Gröbner bases of the toric ideal. One of the combinatorial applications of these algebraic findings leads to insights on smooth $3 \times 3$ transportation polytopes.
Bounds for the maximal degree of certain Gröbner bases of simplicial toric ideals are given. These bounds are close to the bound stated in Eisenbud-Goto's Conjecture on the Castelnuovo-Mumford regularity.
A cut ideal of a graph was introduced by Sturmfels and Sullivant. In this paper, we give a necessary and sufficient condition for toric rings associated to the cut ideal to be Strongly Koszul.
Given a vertex-weighted oriented graph, we can associate to it a set of monomials. We consider the toric ideal whose defining map is given by these monomials. We find a generating set for the toric ideal for certain classes of graphs which depends on the combinatorial structure and weights of the graph. We provide a result which is analogous to the unweighted, unoriented graph case, to show that when the associated simple graph has only trivial even closed walks, the toric ideal is the zero ideal. Moreover, we give necessary and sufficient conditions for the toric ideal of a weighted oriented …
Bounds for the maximum degree of a minimal Gröbner basis of simplicial toric ideals with respect to the reverse lexicographic order are given. These bounds are close to the bound stated in Eisenbud-Goto's Conjecture on the Castelnuovo-Mumford regularity.
The universal Gröbner basis of $I$, is a Gröbner basis for $I$ with respect to all term orders simultaneously. Let $I_G$ be the toric ideal of a graph $G$. We characterize in graph theoretical terms the elements of the universal Gröbner basis of the toric ideal $I_G$. We provide a bound for the degree of the binomials in the universal Gröbner basis of the toric ideal of a graph. Finally we give a family of examples of circuits for which their true degrees are less than the degrees of some elements of the Graver basis.
Given any equigenerated monomial ideal $I$ with the property that the defining ideal $J$ of the fiber cone $ F(I)$ of $I$ is generated by quadratic binomials, we introduce a matrix such that the set of its binomial $2$-minors is a generating set of $J$. In this way, we characterize the fiber cone of sortable and Freiman ideals.
It has been shown previously that a large class of monomial maps equivariant under the action of an infinite symmetric group have finitely generated kernels up to the symmetric action. We prove that these symmetric toric ideals also have finite Gröbner bases up to symmetry for certain monomial orders. An algorithm is presented for computing equivariant Gröbner bases that terminates whenever a finite basis exists, improving on previous algorithms that only guaranteed termination in rings Noetherian up to symmetry. This algorithm can be used to compute equivariant Gröbner bases of the above tori…
Given two toric ideals $I_1,I_2\subset\si$, it is not always true that $I_1+I_2$ is a toric ideal. Given $I_1,...,I_k\subset\si$ a familly of toric ideals we give necessary conditions in order to have that $I_1+...+I_k$ is a toric ideal.
A homogeneous ideal is robust if its universal Gröbner basis is also a minimal generating set. For toric ideals, one has the stronger definition: A toric ideal is strongly robust if its Graver basis equals the set of indispensable binomials. We characterize the codimension 2 strongly robust toric ideals by their Gale diagrams. This gives a positive answer to a question of Petrovic, Thoma, and Vladoiu in the case of codimension 2 toric ideals.
Let $I_G$ be the toric ideal of a graph $G$. We characterize in graph theoretical terms the primitive, the minimal, the indispensable and the fundamental binomials of the toric ideal $I_G$.
Every normal toric ideal of codimension two is minimally generated by a Grobner basis with squarefree initial monomials. A polynomial time algorithm is presented for checking whether a toric ideal of fixed codimension is normal.
Let $G$ be a finite connected simple graph and $I_{G}$ the toric ideal of the edge ring $K[G]$ of $G$. In the present paper, we study finite graphs $G$ with the property that $I_{G}$ is generated by quadratic binomials and $I_{G}$ possesses no quadratic Gröbner basis. First, we give a nontrivial infinite series of finite graphs with the above property. Second, we implement a combinatorial characterization for $I_{G}$ to be generated by quadratic binomials and, by means of the computer search, we classify the finite graphs $G$ with the above property, up to 8 vertices.
A simple formula computing the multiplier ideal of a monomial ideal on an arbitrary affine toric variety is given. Variants for the multiplier module and test ideals are also treated.
We use cellular resolutions of monomial ideals to prove an analog of Hilbert's syzygy theorem for virtual resolutions of monomial ideals on smooth toric varieties.
In 1980, White conjectured that the toric ideal of a matroid is generated by quadratic binomials corresponding to a symmetric exchange. In this paper, we compute Gröbner bases of toric ideals associated with matroids and show that, for every matroid on ground sets of size at most seven except for two matroids, Gröbner bases of toric ideals consist of quadratic binomials corresponding to a symmetric exchange.
Relying on the combinatorial classification of toric ideals using their bouquet structure, we focus on toric ideals of hypergraphs and study how they relate to general toric ideals. We show that hypergraphs exhibit a surprisingly general behavior: the toric ideal associated to any general matrix can be encoded by that of a $0/1$ matrix, while preserving the essential combinatorics of the original ideal. We provide two universality results about the unboundedness of degrees of various generating sets: minimal, Graver, universal Gröbner bases, and indispensable binomials. Finally, we provide a p…
We introduce and study the toric fiber product of two ideals in polynomial rings that are homogeneous with respect to the same multigrading. Under the assumption that the set of degrees of the variables form a linearly independent set, we can explicitly describe generating sets and Groebner bases for these ideals. This allows us to unify and generalize some results in algebraic statistics.
We prove that for any toric ideal of a graph the degree of any element of Graver basis is bounded above by an exponential function of the maximal degree of a circuit.
Some results on the Cohen-Macaulayness of the canonical module. We study the $S_2$-fication of rings which are quotients by lattices ideals. Given a simplicial lattice ideal of codimension two $I,$ its Macaulayfication is given explicitly from a system of generators of $I$.
Directed Gaussian graphical models are statistical models that use a directed acyclic graph (DAG) to represent the conditional independence structures between a set of jointly normal random variables. The DAG specifies the model through recursive factorization of the parametrization, via restricted conditional distributions. In this paper, we make an attempt to characterize the DAGs whose vanishing ideals are toric ideals. In particular, we give some combinatorial criteria to construct such DAGs from smaller DAGs which have toric vanishing ideals. An associated monomial map called the shortest…
Let $I \subseteq R = \mathbb{K}[x_1,\ldots,x_n]$ be a toric ideal, i.e., a binomial prime ideal. We investigate when the ideal $I$ can be "split" into the sum of two smaller toric ideals. For a general toric ideal $I$, we give a sufficient condition for this splitting in terms of the integer matrix that defines $I$. When $I = I_G$ is the toric ideal of a finite simple graph $G$, we give additional splittings of $I_G$ related to subgraphs of $G$. When there exists a splitting $I = I_1+I_2$ of the toric ideal, we show that in some cases we can describe the (multi-)graded Betti numbers of $I$ in …
We prove that the defining ideal of a sufficiently high Veronese subring of a toric algebra admits a quadratic Gröbner basis consisting of binomials. More generally, we prove that the defining ideal of a sufficiently high Veronese subring of a standard graded ring admits a quadratic Gröbner basis. We give a lower bound on $d$ such that the defining ideal of $d$-th Veronese subring admits a quadratic Gröbner basis. Eisenbud--Reeves--Totaro stated the same theorem without a proof with some lower bound on $d$. In many cases, our lower bound is less than Eisenbud--Reeves--Totaro's lower bound.
We provide a formula to compute the big Cohen-Macaulay test ideal for triples $((R,Δ),\mathfrak{a}^{t})$ where $R$ is a mixed characteristic toric ring and $\mathfrak{a}$ is a monomial ideal. Of particular interest is that this result is consistent with the formulas for test ideals in positive characteristic and multiplier ideals in characteristic zero.
In this paper, we study a class of toric ideals obtained by using some geometric data of ADE trees which are the minimal resolution graphs of rational surface singularities. We compute explicit Gröbner bases for these toric ideals that are also minimal generating sets consisting of large number of binomials of degree $\leq 4$. In particular, they give rise to squarefree initial ideals as well.
We construct a 3-dimensional complete intersection toric variety on which the subadditivity formula doesn't hold, answering negatively a question by Takagi and Watanabe. A combinatorial proof of the subadditivity formula on 2-dimensional normal toric varieties is also provided.
The toric ideal of a $d$-dimensional flow polytope has an initial ideal generated by square-free monomials of degree at most $d$. The toric ideal of a flow polytope of dimension at most four has an initial ideal generated by square-free monomials of degree at most two, with the only exception of the four-dimensional Birkhoff polytope, whose toric ideal has an initial ideal generated by a square-free cubic monomial. The proof is based on a method to classify certain compressed flow polytopes, and a construction of a quadratic pulling triangulation of them. Along the way compressed flow polytope…
We extend the sortability concept to monomial ideals which are not necessarily generated in one degree and as an application we obtain normal Cohen-Macaulay toric rings attached to vertex cover ideals of graphs. Moreover, we consider a construction on a graph called a clique multi-whiskering which always produces vertex cover ideals with componentwise linear powers.
In the present paper, we prove that the toric ideals of certain $s$-block diagonal matching fields have quadratic Gröbner bases. Thus, in particular, those are quadratically generated. By using this result, we provide a new family of toric degenerations of Grassmannians.
For all integers $4 \leq r \leq d$, we show that there exists a finite simple graph $G= G_{r,d}$ with toric ideal $I_G \subset R$ such that $R/I_G$ has (Castelnuovo-Mumford) regularity $r$ and $h$-polynomial of degree $d$. To achieve this goal, we identify a family of graphs such that the graded Betti numbers of the associated toric ideal agree with its initial ideal, and furthermore, this initial ideal has linear quotients. As a corollary, we can recover a result of Hibi, Higashitani, Kimura, and O'Keefe that compares the depth and dimension of toric ideals of graphs.
We show that the toric ideal of a lattice path polymatroid is generated by quadrics corresponding to symmetric exchanges, and give a monomial order under which these quadrics form a Gröbner basis. We then obtain an analogous result for lattice path matroids.
A toric ideal is called robust if its universal Gröbner basis is a minimal set of generators, and is called generalized robust if its universal Gröbner basis equals its universal Markov basis (the union of all its minimal sets of binomial generators). Robust and generalized robust toric ideals are both interesting from both a Commutative Algebra and an Algebraic Statistics perspective. However, only a few nontrivial examples of such ideals are known. In this work we study these properties for toric ideals of both graphs and numerical semigroups. For toric ideals of graphs, we characterize comb…
We study the family of graphs whose number of primitive cycles equals its cycle rank. It is shown that this family is precisely the family of ring graphs. Then we study the complete intersection property of toric ideals of bipartite graphs and oriented graphs. An interesting application is that complete intersection toric ideals of bipartite graphs correspond to ring graphs and that these ideals are minimally generated by Groebner bases. We prove that any graph can be oriented such that its toric ideal is a complete intersection with a universal Groebner basis determined by the cycles. It turn…
In 1980, White conjectured that the toric ideal associated to a matroid is generated by binomials corresponding to a symmetric exchange. In this paper, we prove that classes of matroids for which the toric ideal is generated by quadrics and that has quadratic Gröbner bases, are closed under series and parallel extensions, series and parallel connections, and 2-sums.
In this paper, we discuss the normality of the toric rings of stable set polytopes, and the set of generators and Gröbner bases of toric ideals of stable set polytopes by using the results on that of edge polytopes of finite nonsimple graphs. In particular, for a graph of stability number two, we give a graph theoretical characterization of the set of generators of the toric ideal of the stable set polytope, and a criterion to check whether the toric ring of the stable set polytope is normal or not. One of the application of the results is an infinite family of stable set polytopes whose toric…
To any toric ideal $I_A$, encoded by an integer matrix $A$, we associate a matroid structure called {\em the bouquet graph} of $A$ and introduce another toric ideal called {\em the bouquet ideal} of $A$. We show how these objects capture the essential combinatorial and algebraic information about $I_A$. Passing from the toric ideal to its bouquet ideal reveals a structure that allows us to classify several cases. For example, on the one end of the spectrum, there are ideals that we call {\em stable}, for which bouquets capture the complexity of various generating sets as well as the minimal fr…
In the present paper we consider modal propositional logic and look for the constraints that are imposed to the propositions of the special type $\Box a$ by the structure of the relevant finite Kripke frame. We translate the usual language of modal propositional logic in terms of notions of commutative algebra, namely polynomial rings, ideals, and bases of ideals. We use extensively the perspective obtained in previous works in Algebraic Statistics. We prove that the constraints on $\Box a$ can be derived through a binomial ideal containing a toric ideal and we give sufficient conditions under…
In this paper we study some algebraic and combinatorial behaviors of expansion functor. We show that on monomial ideals some properties like polymatroidalness, weakly polymatroidalness and having linear quotients are preserved under taking the expansion functor. The main part of the paper is devoted to study of toric ideals associated to the expansion of subsets of monomials which are minimal with respect to divisibility. It is shown that, for a given discrete polymatroid $P$, if toric ideal of $P$ is generated by double swaps then toric ideal of any expansion of $P$ has such a property. This …
We present examples which show that in dimension higher than one or codimension higher than two, there exist toric ideals I_A such that no binomial ideal contained in I_A and of the same dimension is a complete intersection. This result has important implications in sparse elimination theory and in the study of the Horn system of partial differential equations.
In this paper we present a version of the general polynomial involutive algorithm for computing Janet bases specialized to toric ideals. The relevant data structures are Janet trees which provide a very fast search for a Janet divisor. We broach also efficiency issues in view of application of the algorithm presented to computation of toric ideals.
A numerical semigroup is said to be universally free if it is free for any possible arrangement of its minimal generating set. In this work, we establish that toric ideals associated with universally free numerical semigroups can be generated by their set of circuits. Additionally, we provide a characterization of universally free numerical semigroups in terms of Gröbner bases. Specifically, a numerical semigroup is universally free if and only if all initial ideals of its corresponding toric ideal are complete intersections. Furthermore, we establish several equalities among the toric bases o…
We compute the graded Betti numbers for the toric ideal of a family of graphs constructed by adjoining a cycle to a complete bipartite graph. The key observation is that this family admits an initial ideal which has linear quotients. As a corollary, we compute the Hilbert series and $h$-vector for all the toric ideals of graphs in this family.
We introduce the notion of Betti category for graded modules over suitably graded polynomial rings, and more generally for modules over certain small categories. Our categorical approach allows us to treat simultaneously many important cases, such as monomial ideals and toric rings. We prove that in these cases the Betti category is a finite combinatorial object that completely determines the structure of the minimal free resolution. For monomial ideals, the Betti category is the same as the Betti poset that we studied in a previous article. We describe in detail and with examples how the theo…
