We present a method for skin lesion segmentation for the ISIC 2017 Skin Lesion Segmentation Challenge. Our approach is based on a Fully Convolutional Network architecture which is trained end to end, from scratch, on a limited dataset. Our semantic segmentation architecture utilizes several recent innovations in particularly in the combined use of (i) use of atrous convolutions to increase the effective field of view of the network's receptive field without increasing the number of parameters, (ii) the use of network-in-network $1\times1$ convolution layers to add capacity to the network and (iii) state-of-art super-resolution upsampling of predictions using subpixel CNN layers. We reported a mean IOU score of 0.642 on the validation set provided by the organisers.
In this paper, we studied extensively on different deep learning based methods to detect melanoma and skin lesion cancers. Melanoma, a form of malignant skin cancer is very threatening to health. Proper diagnosis of melanoma at an earlier stage is crucial for the success rate of complete cure. Dermoscopic images with Benign and malignant forms of skin cancer can be analyzed by computer vision system to streamline the process of skin cancer detection. In this study, we experimented with various neural networks which employ recent deep learning based models like PNASNet-5-Large, InceptionResNetV…
In this work, we explore the issue of the inter-annotator agreement for training and evaluating automated segmentation of skin lesions. We explore what different degrees of agreement represent, and how they affect different use cases for segmentation. We also evaluate how conditioning the ground truths using different (but very simple) algorithms may help to enhance agreement and may be appropriate for some use cases. The segmentation of skin lesions is a cornerstone task for automated skin lesion analysis, useful both as an end-result to locate/detect the lesions and as an ancillary task for …
Technische Universität Kaiserslautern（凯泽斯劳滕工业大学）；German Research Center for Artificial Intelligence GmbH (DFKI)（德国人工智能研究中心）
It is generally believed that the human visual system is biased towards the recognition of shapes rather than textures. This assumption has led to a growing body of work aiming to align deep models' decision-making processes with the fundamental properties of human vision. The reliance on shape features is primarily expected to improve the robustness of these models under covariate shift. In this paper, we revisit the significance of shape-biases for the classification of skin lesion images. Our analysis shows that different skin lesion datasets exhibit varying biases towards individual image …
The semantic segmentation of skin lesions is an important and common initial task in the computer aided diagnosis of dermoscopic images. Although deep learning-based approaches have considerably improved the segmentation accuracy, there is still room for improvement by addressing the major challenges, such as variations in lesion shape, size, color and varying levels of contrast. In this work, we propose the first deep semantic segmentation framework for dermoscopic images which incorporates, along with the original RGB images, information extracted using the physics of skin illumination and i…
University of Technology Sydney（悉尼科技大学）；Zhibian Technology Co. Ltd.（智变科技有限公司）
Skin lesion segmentation is a crucial step in the computer-aided diagnosis of dermoscopic images. In the last few years, deep learning based semantic segmentation methods have significantly advanced the skin lesion segmentation results. However, the current performance is still unsatisfactory due to some challenging factors such as large variety of lesion scale and ambiguous difference between lesion region and background. In this paper, we propose a simple yet effective framework, named Dual Objective Networks (DONet), to improve the skin lesion segmentation. Our DONet adopts two symmetric de…
Melanoma is one of the most serious skin cancers that can occur in any part of the human skin. Early diagnosis of melanoma lesions will significantly increase their chances of being cured. Improving melanoma segmentation will help doctors or surgical robots remove the lesion more accurately from body parts. Recently, the learning-based segmentation methods achieved desired results in image segmentation compared to traditional algorithms. This study proposes a new approach to improve melanoma skin lesions detection and segmentation by defining a two-step pipeline based on deep learning models. …
Melanoma is clinically difficult to distinguish from common benign skin lesions, particularly melanocytic naevus and seborrhoeic keratosis. The dermoscopic appearance of these lesions has huge intra-class variations and high inter-class visual similarities. Most current research is focusing on single-class segmentation irrespective of classes of skin lesions. In this work, we evaluate the performance of deep learning on multi-class segmentation of ISIC-2017 challenge dataset, which consists of 2,750 dermoscopic images. We propose an end-to-end solution using fully convolutional networks (FCNs)…
Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences（中国科学院深圳先进技术研究院）；University of Science and Technology of China（中国科学技术大学）
Skin lesion segmentation is an important step for automatic melanoma diagnosis. Due to the non-negligible diversity of lesions from different patients, extracting powerful context for fine-grained semantic segmentation is still challenging today. Although the deep convolutional neural network (CNNs) have made significant improvements on skin lesion segmentation, they often fail to reserve the spatial details and long-range dependencies context due to consecutive convolution striding and pooling operations inside CNNs. In this paper, we formulate a cascaded context enhancement neural network fo…
University of Girona（赫罗纳大学）；Université Clermont Auvergne（克莱蒙奥弗涅大学）
Automatic segmentation of skin lesion is considered a crucial step in Computer Aided Diagnosis (CAD) for melanoma diagnosis. Despite its significance, skin lesion segmentation remains a challenging task due to their diverse color, texture, and indistinguishable boundaries and forms an open problem. Through this study, we present a new and automatic semantic segmentation network for robust skin lesion segmentation named Dermoscopic Skin Network (DSNet). In order to reduce the number of parameters to make the network lightweight, we used depth-wise separable convolution in lieu of standard convo…
Asturias University Central Hospital（阿斯图里亚斯大学中央医院）
This abstract briefly describes a segmentation algorithm developed for the ISIC 2017 Skin Lesion Detection Competition hosted at [ref]. The objective of the competition is to perform a segmentation (in the form of a binary mask image) of skin lesions in dermoscopic images as close as possible to a segmentation performed by trained clinicians, which is taken as ground truth. This project only takes part in the segmentation phase of the challenge. The other phases of the competition (feature extraction and lesion identification) are not considered. The proposed algorithm consists of 4 steps: (1)…
Troy High School（特洛伊高中）；Harvard College（哈佛学院）；Beaumont Health（博蒙特健康）
As melanoma diagnoses increase across the US, automated efforts to identify malignant lesions become increasingly of interest to the research community. Segmentation of dermoscopic images is the first step in this process, thus accuracy is crucial. Although techniques utilizing convolutional neural networks have been used in the past for lesion segmentation, we present a solution employing the recently published DeepLab 3, an atrous convolution method for image segmentation. Although the results produced by this run are not ideal, with a mean Jaccard index of 0.498, we believe that with furthe…
The prevalence of skin melanoma is rapidly increasing as well as the recorded death cases of its patients. Automatic image segmentation tools play an important role in providing standardized computer-assisted analysis for skin melanoma patients. Current state-of-the-art segmentation methods are based on fully convolutional neural networks, which utilize an encoder-decoder approach. However, these methods produce coarse segmentation masks due to the loss of location information during the encoding layers. Inspired by Pyramid Scene Parsing Network (PSP-Net), we propose an encoder-decoder model t…
Early detection of melanoma is difficult for the human eye but a crucial step towards reducing its death rate. Computerized detection of these melanoma and other skin lesions is necessary. The central research question in this paper is "How to segment skin lesion images using a neural network with low available data?". This question is divided into three sub questions regarding best performing network structure, training data and training method. First theory associated with these questions is discussed. Literature states that U-net CNN structures have excellent performances on the segmentatio…
Shahid Beheshti University（沙希德·贝赫什提大学）；RWTH Aachen University（亚琛工业大学）；Alzahra University（阿尔扎赫拉大学）；University of Regensburg（雷根斯堡大学）
Melanoma is caused by the abnormal growth of melanocytes in human skin. Like other cancers, this life-threatening skin cancer can be treated with early diagnosis. To support a diagnosis by automatic skin lesion segmentation, several Fully Convolutional Network (FCN) approaches, specifically the U-Net architecture, have been proposed. The U-Net model with a symmetrical architecture has exhibited superior performance in the segmentation task. However, the locality restriction of the convolutional operation incorporated in the U-Net architecture limits its performance in capturing long-range depe…
International Institute of Information Technology Naya Raipur（国际信息技术学院纳亚赖普尔分校）
Skin cancer is one of the most prevalent forms of human cancer. It is recognized mainly visually, beginning with clinical screening and continuing with the dermoscopic examination, histological assessment, and specimen collection. Deep convolutional neural networks (CNNs) perform highly segregated and potentially universal tasks against a classified finegrained object. This research proposes a novel multi-class prediction framework that classifies skin lesions based on ViT and ViTGAN. Vision transformers-based GANs (Generative Adversarial Networks) are utilized to tackle the class imbalance. T…
Exploring the Impact of Skin Color on Skin Lesion Segmentation
School of Digital and Physical Sciences at the University of Hull（赫尔大学数字与物理科学学院）；Faculty of Electrical Engineering at the University of Sarajevo（萨拉热窝大学电气工程学院）
This paper proposes an innovative method for segmentation of skin lesions in dermoscopy images developed by the authors, based on fuzzy classification of pixels and histogram thresholding.
kin cancer is considered one of the most common type of cancer in several countries. Due to the difficulty and subjectivity in the clinical diagnosis of skin lesions, Computer-Aided Diagnosis systems are being developed for assist experts to perform more reliable diagnosis. The clinical analysis and diagnosis of skin lesions relies not only on the visual information but also on the context information provided by the patient. This work addresses the problem of pigmented skin lesions detection from smartphones captured images. In addition to the features extracted from images, patient context i…
This paper summarizes our method and validation results for the ISIC Challenge 2018 - Skin Lesion Analysis Towards Melanoma Detection - Task 1: Lesion Segmentation
This paper summarizes our method and validation results for the ISBI Challenge 2017 - Skin Lesion Analysis Towards Melanoma Detection - Part I: Lesion Segmentation
We present a deep learning approach to the ISIC 2017 Skin Lesion Classification Challenge using a multi-scale convolutional neural network. Our approach utilizes an Inception-v3 network pre-trained on the ImageNet dataset, which is fine-tuned for skin lesion classification using two different scales of input images.
This article presents the design, experiments and results of our solution submitted to the 2018 ISIC challenge: Skin Lesion Analysis Towards Melanoma Detection. We design a pipeline using state-of-the-art Convolutional Neural Network (CNN) models for a Lesion Boundary Segmentation task and a Lesion Diagnosis task.
Our system addresses Part 1, Lesion Segmentation and Part 3, Lesion Classification of the ISIC 2017 challenge. Both algorithms make use of deep convolutional networks to achieve the challenge objective.
Recent years have witnessed a rapid development of automated methods for skin lesion diagnosis and classification. Due to an increasing deployment of such systems in clinics, it has become important to develop a more robust system towards various Out-of-Distribution(OOD) samples (unknown skin lesions and conditions). However, the current deep learning models trained for skin lesion classification tend to classify these OOD samples incorrectly into one of their learned skin lesion categories. To address this issue, we propose a simple yet strategic approach that improves the OOD detection perfo…
Isfahan University of Technology（伊斯法罕理工大学）；University of British Columbia（不列颠哥伦比亚大学）；University of Michigan（密歇根大学）；McMaster University（麦克马斯特大学）
One of the essential tasks in medical image analysis is segmentation and accurate detection of borders. Lesion segmentation in skin images is an essential step in the computerized detection of skin cancer. However, many of the state-of-the-art segmentation methods have deficiencies in their border detection phase. In this paper, a new class of fully convolutional network is proposed, with new dense pooling layers for segmentation of lesion regions in skin images. This network leads to highly accurate segmentation of lesions on skin lesion datasets which outperforms state-of-the-art algorithms …
Skin cancer diagnosis using NIR spectroscopy data of skin lesions in vivo using machine learning algorithms
Federal University of Espírito Santo (UFES)（圣埃斯皮里图联邦大学）；Secretary of Health of the Espírito Santo State（圣埃斯皮里图州卫生部）；University Hospital Cassiano Antônio Moraes (HUCAM)（卡西亚诺·安东尼奥·莫赖斯大学医院）
In this paper we approach the problem of skin lesion segmentation using a convolutional neural network based on the U-Net architecture. We present a set of training strategies that had a significant impact on the performance of this model. We evaluated this method on the ISIC Challenge 2018 - Skin Lesion Analysis Towards Melanoma Detection, obtaining threshold Jaccard index of 77.5%.
Skin lesion identification is a key step toward dermatological diagnosis. When describing a skin lesion, it is very important to note its body site distribution as many skin diseases commonly affect particular parts of the body. To exploit the correlation between skin lesions and their body site distributions, in this study, we investigate the possibility of improving skin lesion classification using the additional context information provided by body location. Specifically, we build a deep multi-task learning (MTL) framework to jointly optimize skin lesion classification and body location cla…
Shanghai Jiao Tong University（上海交通大学）；École de technologie supérieure, Université du Québec（魁北克大学高等技术学院）；University of Leicester（莱斯特大学）
Skin lesion detection in dermoscopic images is essential in the accurate and early diagnosis of skin cancer by a computerized apparatus. Current skin lesion segmentation approaches show poor performance in challenging circumstances such as indistinct lesion boundaries, low contrast between the lesion and the surrounding area, or heterogeneous background that causes over/under segmentation of the skin lesion. To accurately recognize the lesion from the neighboring regions, we propose a dilated scale-wise feature fusion network based on convolution factorization. Our network is designed to simul…
University of Burgundy（勃艮第大学）；University of Cassino（卡西诺大学）；University of Girona（赫罗纳大学）
Skin lesion segmentation is one of the first steps towards automatic Computer-Aided Diagnosis of skin cancer. Vast variety in the appearance of the skin lesion makes this task very challenging. The contribution of this paper is to apply a power foreground extraction technique called GrabCut for automatic skin lesion segmentation with minimal human interaction in HSV color space. Preprocessing was performed for removing the outer black border. Jaccard Index was measured to evaluate the performance of the segmentation method. On average, 0.71 Jaccard Index was achieved on 1000 images from ISIC c…
In this study, we investigate what a practically useful approach is in order to achieve robust skin disease diagnosis. A direct approach is to target the ground truth diagnosis labels, while an alternative approach instead focuses on determining skin lesion characteristics that are more visually consistent and discernible. We argue that, for computer-aided skin disease diagnosis, it is both more realistic and more useful that lesion type tags should be considered as the target of an automated diagnosis system such that the system can first achieve a high accuracy in describing skin lesions, an…
Medical Image Analysis Lab, School of Computing Science（计算科学学院医学图像分析实验室）；Simon Fraser University（西蒙弗雷泽大学）
We present an automated approach to detect and longitudinally track skin lesions on 3D total-body skin surface scans. The acquired 3D mesh of the subject is unwrapped to a 2D texture image, where a trained objected detection model, Faster R-CNN, localizes the lesions within the 2D domain. These detected skin lesions are mapped back to the 3D surface of the subject and, for subjects imaged multiple times, we construct a graph-based matching procedure to longitudinally track lesions that considers the anatomical correspondences among pairs of meshes and the geodesic proximity of corresponding le…
There has been a steady increase in the incidence of skin cancer worldwide, with a high rate of mortality. Early detection and segmentation of skin lesions are crucial for timely diagnosis and treatment, necessary to improve the survival rate of patients. However, skin lesion segmentation is a challenging task due to the low contrast of lesions and their high similarity in terms of appearance, to healthy tissue. This underlines the need for an accurate and automatic approach for skin lesion segmentation. To tackle this issue, we propose a convolutional neural network (CNN) called SkinNet. The …
This paper summarizes our method and validation results for part 1 of the ISBI Challenge 2018. Our algorithm makes use of deep encoder-decoder network and novel skin lesion data augmentation to segment the challenge objective. Besides, we also propose an effective testing strategy by applying multi-model comparison.
This paper describes the participation of Araguaia Medical Vision Lab at the International Skin Imaging Collaboration 2017 Skin Lesion Challenge. We describe the use of deep convolutional neural networks in attempt to classify images of Melanoma and Seborrheic Keratosis lesions. With use of finetuned GoogleNet and AlexNet we attained results of 0.950 and 0.846 AUC on Seborrheic Keratosis and Melanoma respectively.
VIT University（VIT大学）；SSN College of Engineering（SSN工程学院）
Skin cancer is the most common of all cancers and each year million cases of skin cancer are treated. Treating and curing skin cancer is easy, if it is diagnosed and treated at an early stage. In this work we propose an automatic technique for skin lesion segmentation in dermoscopic images which helps in classifying the skin cancer types. The proposed method comprises of two major phases (1) preprocessing and (2) segmentation using semi-supervised learning algorithm. In the preprocessing phase noise are removed using filtering technique and in the segmentation phase skin lesions are segmented …
Convolutional Neural Networks have demonstrated human-level performance in the classification of melanoma and other skin lesions, but evident performance disparities between differing skin tones should be addressed before widespread deployment. In this work, we propose an efficient yet effective algorithm for automatically labelling the skin tone of lesion images, and use this to annotate the benchmark ISIC dataset. We subsequently use these automated labels as the target for two leading bias unlearning techniques towards mitigating skin tone bias. Our experimental results provide evidence tha…
This report summarises our method and validation results for the ISIC Challenge 2018 - Skin Lesion Analysis Towards Melanoma Detection - Task 1: Lesion Segmentation. We present a two-stage method for lesion segmentation with optimised training method and ensemble post-process. Our method achieves state-of-the-art performance on lesion segmentation and we win the first place in ISIC 2018 task1.
University of Campinas（坎皮纳斯大学）；Instituto Superior Técnico（里斯本高等理工学院）
Deep Learning failure cases are abundant, particularly in the medical area. Recent studies in out-of-distribution generalization have advanced considerably on well-controlled synthetic datasets, but they do not represent medical imaging contexts. We propose a pipeline that relies on artifacts annotation to enable generalization evaluation and debiasing for the challenging skin lesion analysis context. First, we partition the data into levels of increasingly higher biased training and test sets for better generalization assessment. Then, we create environments based on skin lesion artifacts to …
We proposed a two stage framework with only one network to analyze skin lesion images, we firstly trained a convolutional network to classify these images, and cropped the import regions which the network has the maximum activation value. In the second stage, we retrained this CNN with the image regions extracted from stage one and output the final probabilities. The two stage framework achieved a mean AUC of 0.857 in ISIC-2017 skin lesion validation set and is 0.04 higher than that of the original inputs, 0.821.
University of North Carolina at Chapel Hill（北卡罗来纳大学教堂山分校）；Northwestern Polytechnical University（西北工业大学）
We recognize that the skin lesion diagnosis is an essential and challenging sub-task in Image classification, in which the Fisher vector (FV) encoding algorithm and deep convolutional neural network (DCNN) are two of the most successful techniques. Since the joint use of FV and DCNN has demonstrated proven success, the joint techniques could have discriminatory power on skin lesion diagnosis as well. To this hypothesis, we propose the aggregation algorithm for skin lesion diagnosis that utilize the residual network to extract the local features and the Fisher vector method to aggregate the loc…
CNR-ISASI（意大利国家研究委员会应用科学与智能系统研究所）；University of Salento（萨兰托大学）
This article presents a Deep CNN, based on the DenseNet architecture jointly with a highly discriminating learning methodology, in order to classify seven kinds of skin lesions: Melanoma, Melanocytic nevus, Basal cell carcinoma, Actinic keratosis / Bowen's disease, Benign keratosis, Dermatofibroma, Vascular lesion. In particular a 61 layers DenseNet, pre-trained on IMAGENET dataset, has been fine-tuned on ISIC 2018 Task 3 Challenge Dataset exploiting a Center Loss function.
McGill University（麦吉尔大学）；Universite de Montrea（蒙特利尔大学）；ETS Montreal（蒙特利尔高等工程学院）
In this paper, we study the problem of out-of-distribution detection in skin disease images. Publicly available medical datasets normally have a limited number of lesion classes (e.g. HAM10000 has 8 lesion classes). However, there exists a few thousands of clinically identified diseases. Hence, it is important if lesions not in the training data can be differentiated. Toward this goal, we propose DeepIF, a non-parametric Isolation Forest based approach combined with deep convolutional networks. We conduct comprehensive experiments to compare our DeepIF with three baseline models. Results demon…
Nanyang Technological University（南洋理工大学）；Central South University（中南大学）；Singapore University of Technology and Design（新加坡科技设计大学）
Deep learning techniques have shown their superior performance in dermatologist clinical inspection. Nevertheless, melanoma diagnosis is still a challenging task due to the difficulty of incorporating the useful dermatologist clinical knowledge into the learning process. In this paper, we propose a novel knowledge-aware deep framework that incorporates some clinical knowledge into collaborative learning of two important melanoma diagnosis tasks, i.e., skin lesion segmentation and melanoma recognition. Specifically, to exploit the knowledge of morphological expressions of the lesion region and …
Accurate segmentation of skin lesion from dermoscopic images is a crucial part of computer-aided diagnosis of melanoma. It is challenging due to the fact that dermoscopic images from different patients have non-negligible lesion variation, which causes difficulties in anatomical structure learning and consistent skin lesion delineation. In this paper, we propose a novel bi-directional dermoscopic feature learning (biDFL) framework to model the complex correlation between skin lesions and their informative context. By controlling feature information passing through two complementary directions,…
Shri Guru Gobind Singhji Institute of Engineering and Technology（什里·古鲁·戈宾德·辛格吉工程技术学院）
Automatic lesion analysis is critical in skin cancer diagnosis and ensures effective treatment. The computer aided diagnosis of such skin cancer in dermoscopic images can significantly reduce the clinicians workload and help improve diagnostic accuracy. Although researchers are working extensively to address this problem, early detection and accurate identification of skin lesions remain challenging. This research focuses on a two step framework for skin lesion segmentation followed by classification for lesion analysis. We explored the effectiveness of deep convolutional neural network based …
Northwestern Polytechnical University（西北工业大学）；University of Adelaide（阿德莱德大学）
Automated skin lesion segmentation and classification are two most essential and related tasks in the computer-aided diagnosis of skin cancer. Despite their prevalence, deep learning models are usually designed for only one task, ignoring the potential benefits in jointly performing both tasks. In this paper, we propose the mutual bootstrapping deep convolutional neural networks (MB-DCNN) model for simultaneous skin lesion segmentation and classification. This model consists of a coarse segmentation network (coarse-SN), a mask-guided classification network (mask-CN), and an enhanced segmentati…
The iToBoS dataset: skin region images extracted from 3D total body photographs for lesion detection
Computer Vision and Robotics Research Institute, University of Girona（赫罗纳大学计算机视觉与机器人研究所）；Hospital Clínic Barcelona, Universitat de Barcelona（巴塞罗那大学巴塞罗那临床医院）；Frazer Institute, The University of Queensland（昆士兰大学弗雷泽研究所）；University of Trieste（的里雅斯特大学）；ISAHIT；Canfield Scientific, Inc.（坎菲尔德科学公司）；HUN-REN Institute for Computer Science and Control（HUN-REN计算机科学与控制研究所）
