The ability to identify and temporally segment fine-grained human actions throughout a video is crucial for robotics, surveillance, education, and beyond. Typical approaches decouple this problem by first extracting local spatiotemporal features from video frames and then feeding them into a temporal classifier that captures high-level temporal patterns. We introduce a new class of temporal models, which we call Temporal Convolutional Networks (TCNs), that use a hierarchy of temporal convolutions to perform fine-grained action segmentation or detection. Our Encoder-Decoder TCN uses pooling and upsampling to efficiently capture long-range temporal patterns whereas our Dilated TCN uses dilated convolutions. We show that TCNs are capable of capturing action compositions, segment durations, and long-range dependencies, and are over a magnitude faster to train than competing LSTM-based Recurrent Neural Networks. We apply these models to three challenging fine-grained datasets and show large improvements over the state of the art.
We propose a novel technique to incorporate attention within convolutional neural networks using feature maps generated by a separate convolutional autoencoder. Our attention architecture is well suited for incorporation with deep convolutional networks. We evaluate our model on benchmark segmentation datasets in skin cancer segmentation and lung lesion segmentation. Results show highly competitive performance when compared with U-Net and it's residual variant.
We present a simple and effective framework for simultaneous semantic segmentation and instance segmentation with Fully Convolutional Networks (FCNs). The method, called BiSeg, predicts instance segmentation as a posterior in Bayesian inference, where semantic segmentation is used as a prior. We extend the idea of position-sensitive score maps used in recent methods to a fusion of multiple score maps at different scales and partition modes, and adopt it as a robust likelihood for instance segmentation inference. As both Bayesian inference and map fusion are performed per pixel, BiSeg is a full…
This paper summarizes our method and validation results for the ISIC Challenge 2018 - Skin Lesion Analysis Towards Melanoma Detection - Task 1: Lesion Segmentation
This paper summarizes our method and validation results for the ISBI Challenge 2017 - Skin Lesion Analysis Towards Melanoma Detection - Part I: Lesion Segmentation
In this paper, we propose a novel medical image segmentation using iterative deep learning framework. We have combined an iterative learning approach and an encoder-decoder network to improve segmentation results, which enables to precisely localize the regions of interest (ROIs) including complex shapes or detailed textures of medical images in an iterative manner. The proposed iterative deep convolutional encoder-decoder network consists of two main paths: convolutional encoder path and convolutional decoder path with iterative learning. Experimental results show that the proposed iterative …
Indian Institute of Technology Kharagpur（印度理工学院卡拉格普尔分校）
Automatic segmentation of retinal blood vessels from fundus images plays an important role in the computer aided diagnosis of retinal diseases. The task of blood vessel segmentation is challenging due to the extreme variations in morphology of the vessels against noisy background. In this paper, we formulate the segmentation task as a multi-label inference task and utilize the implicit advantages of the combination of convolutional neural networks and structured prediction. Our proposed convolutional neural network based model achieves strong performance and significantly outperforms the state…
Quantitative analysis of brain MRI at the age of 6 months is difficult because of the limited contrast between white matter and gray matter. In this study, we use a dilated triplanar convolutional neural network in combination with a non-dilated 3D convolutional neural network for the segmentation of white matter, gray matter and cerebrospinal fluid in infant brain MR images, as provided by the MICCAI grand challenge on 6-month infant brain MRI segmentation.
Tsinghua University（清华大学）；Microsoft Research Asia（微软亚洲研究院）
We present the first fully convolutional end-to-end solution for instance-aware semantic segmentation task. It inherits all the merits of FCNs for semantic segmentation and instance mask proposal. It performs instance mask prediction and classification jointly. The underlying convolutional representation is fully shared between the two sub-tasks, as well as between all regions of interest. The proposed network is highly integrated and achieves state-of-the-art performance in both accuracy and efficiency. It wins the COCO 2016 segmentation competition by a large margin. Code would be released a…
Convolutional networks are powerful visual models that yield hierarchies of features. We show that convolutional networks by themselves, trained end-to-end, pixels-to-pixels, exceed the state-of-the-art in semantic segmentation. Our key insight is to build "fully convolutional" networks that take input of arbitrary size and produce correspondingly-sized output with efficient inference and learning. We define and detail the space of fully convolutional networks, explain their application to spatially dense prediction tasks, and draw connections to prior models. We adapt contemporary classificat…
Image segmentation is an important step in most visual tasks. While convolutional neural networks have shown to perform well on single image segmentation, to our knowledge, no study has been been done on leveraging recurrent gated architectures for video segmentation. Accordingly, we propose a novel method for online segmentation of video sequences that incorporates temporal data. The network is built from fully convolutional element and recurrent unit that works on a sliding window over the temporal data. We also introduce a novel convolutional gated recurrent unit that preserves the spatial …
Convolutional networks are powerful visual models that yield hierarchies of features. We show that convolutional networks by themselves, trained end-to-end, pixels-to-pixels, improve on the previous best result in semantic segmentation. Our key insight is to build "fully convolutional" networks that take input of arbitrary size and produce correspondingly-sized output with efficient inference and learning. We define and detail the space of fully convolutional networks, explain their application to spatially dense prediction tasks, and draw connections to prior models. We adapt contemporary cla…
In this work, we propose a multi-modal Convolutional Neural Network (CNN) approach for brain tumor segmentation. We investigate how to combine different modalities efficiently in the CNN framework.We adapt various fusion methods, which are previously employed on video recognition problem, to the brain tumor segmentation problem,and we investigate their efficiency in terms of memory and performance.Our experiments, which are performed on BRATS dataset, lead us to the conclusion that learning separate representations for each modality and combining them for brain tumor segmentation could increas…
Medical imaging based prostate cancer diagnosis procedure uses intra-operative transrectal ultrasound (TRUS) imaging to visualize the prostate shape and location to collect tissue samples. Correct tissue sampling from prostate requires accurate prostate segmentation in TRUS images. To achieve this, this study uses a novel residual connection based fully convolutional network. The advantage of this segmentation technique is that it requires no pre-processing of TRUS images to perform the segmentation. Thus, it offers a faster and straightforward prostate segmentation from TRUS images. Results s…
Segmentation of mandibles in CT scans during virtual surgical planning is crucial for 3D surgical planning in order to obtain a detailed surface representation of the patients bone. Automatic segmentation of mandibles in CT scans is a challenging task due to large variation in their shape and size between individuals. In order to address this challenge we propose a convolutional neural network approach for mandible segmentation in CT scans by considering the continuum of anatomical structures through different planes. The proposed convolutional neural network adopts the architecture of the U-N…
In the isointense stage, the accurate volumetric image segmentation is a challenging task due to the low contrast between tissues. In this paper, we propose a novel very deep network architecture based on a densely convolutional network for volumetric brain segmentation. The proposed network architecture provides a dense connection between layers that aims to improve the information flow in the network. By concatenating features map of fine and coarse dense blocks, it allows capturing multi-scale contextual information. Experimental results demonstrate significant advantages of the proposed me…
Isfahan University of Technology（伊斯法罕理工大学）；University of British Columbia（不列颠哥伦比亚大学）；University of Michigan（密歇根大学）；McMaster University（麦克马斯特大学）
One of the essential tasks in medical image analysis is segmentation and accurate detection of borders. Lesion segmentation in skin images is an essential step in the computerized detection of skin cancer. However, many of the state-of-the-art segmentation methods have deficiencies in their border detection phase. In this paper, a new class of fully convolutional network is proposed, with new dense pooling layers for segmentation of lesion regions in skin images. This network leads to highly accurate segmentation of lesions on skin lesion datasets which outperforms state-of-the-art algorithms …
In the last decade, deep learning has contributed to advances in a wide range computer vision tasks including texture analysis. This paper explores a new approach for texture segmentation using deep convolutional neural networks, sharing important ideas with classic filter bank based texture segmentation methods. Several methods are developed to train Fully Convolutional Networks to segment textures in various applications. We show in particular that these networks can learn to recognize and segment a type of texture, e.g. wood and grass from texture recognition datasets (no training segmentat…
Department of Computer Science（计算机科学系）；University of Saskatchewan, Canada（萨斯喀彻温大学）
In this paper, we propose an efficient architecture for semantic image segmentation using the depth-to-space (D2S) operation. Our D2S model is comprised of a standard CNN encoder followed by a depth-to-space reordering of the final convolutional feature maps. Our approach eliminates the decoder portion of traditional encoder-decoder segmentation models and reduces the amount of computation almost by half. As a participant of the DeepGlobe Road Extraction competition, we evaluate our models on the corresponding road segmentation dataset. Our highly efficient D2S models exhibit comparable perfor…
CISPA Helmholtz Center for Information Security（CISPA 亥姆霍兹信息安全中心）；Max Planck Institute for Informatics（马克斯·普朗克信息学研究所）
Recently, learning-based image synthesis has enabled to generate high-resolution images, either applying popular adversarial training or a powerful perceptual loss. However, it remains challenging to successfully leverage synthetic data for improving semantic segmentation with additional synthetic images. Therefore, we suggest to generate intermediate convolutional features and propose the first synthesis approach that is catered to such intermediate convolutional features. This allows us to generate new features from label masks and include them successfully into the training procedure in ord…
Recent leading approaches to semantic segmentation rely on deep convolutional networks trained with human-annotated, pixel-level segmentation masks. Such pixel-accurate supervision demands expensive labeling effort and limits the performance of deep networks that usually benefit from more training data. In this paper, we propose a method that achieves competitive accuracy but only requires easily obtained bounding box annotations. The basic idea is to iterate between automatically generating region proposals and training convolutional networks. These two steps gradually recover segmentation ma…
Semantic segmentation has recently witnessed major progress, where fully convolutional neural networks have shown to perform well. However, most of the previous work focused on improving single image segmentation. To our knowledge, no prior work has made use of temporal video information in a recurrent network. In this paper, we introduce a novel approach to implicitly utilize temporal data in videos for online semantic segmentation. The method relies on a fully convolutional network that is embedded into a gated recurrent architecture. This design receives a sequence of consecutive video fram…
We introduce an accurate lung segmentation model for chest radiographs based on deep convolutional neural networks. Our model is based on atrous convolutional layers to increase the field-of-view of filters efficiently. To improve segmentation performances further, we also propose a multi-stage training strategy, network-wise training, which the current stage network is fed with both input images and the outputs from pre-stage network. It is shown that this strategy has an ability to reduce falsely predicted labels and produce smooth boundaries of lung fields. We evaluate the proposed model on…
Facebook AI Research（Facebook人工智能研究院）；University of Oxford（牛津大学）
Convolutional networks are the de-facto standard for analyzing spatio-temporal data such as images, videos, and 3D shapes. Whilst some of this data is naturally dense (e.g., photos), many other data sources are inherently sparse. Examples include 3D point clouds that were obtained using a LiDAR scanner or RGB-D camera. Standard "dense" implementations of convolutional networks are very inefficient when applied on such sparse data. We introduce new sparse convolutional operations that are designed to process spatially-sparse data more efficiently, and use them to develop spatially-sparse convol…
Semantic segmentation is an important preliminary step towards automatic medical image interpretation. Recently deep convolutional neural networks have become the first choice for the task of pixel-wise class prediction. While incorporating prior knowledge about the structure of target objects has proven effective in traditional energy-based segmentation approaches, there has not been a clear way for encoding prior knowledge into deep learning frameworks. In this work, we propose a new loss term that encodes the star shape prior into the loss function of an end-to-end trainable fully convoluti…
We introduce a novel approach for temporal activity segmentation with timestamp supervision. Our main contribution is a graph convolutional network, which is learned in an end-to-end manner to exploit both frame features and connections between neighboring frames to generate dense framewise labels from sparse timestamp labels. The generated dense framewise labels can then be used to train the segmentation model. In addition, we propose a framework for alternating learning of both the segmentation model and the graph convolutional model, which first initializes and then iteratively refines the …
Télécom Paris - Institut Polytechnique de Paris（巴黎理工学院巴黎电信学院）；Università di Napoli Parthenope（那不勒斯帕泰诺佩大学）；La Rochelle Université（拉罗谢尔大学）
Semantic segmentation is a fundamental topic in computer vision. Several deep learning methods have been proposed for semantic segmentation with outstanding results. However, these models require a lot of densely annotated images. To address this problem, we propose a new algorithm that uses HyperGraph Convolutional Networks for Weakly-supervised Semantic Segmentation (HyperGCN-WSS). Our algorithm constructs spatial and k-Nearest Neighbor (k-NN) graphs from the images in the dataset to generate the hypergraphs. Then, we train a specialized HyperGraph Convolutional Network (HyperGCN) architectu…
Automatic segmentation of medical images is among most demanded works in the medical information field since it saves time of the experts in the field and avoids human error factors. In this work, a method based on Conditional Adversarial Networks and Fully Convolutional Networks is proposed for the automatic segmentation of the liver MRIs. The proposed method, without any post-processing, is achieved the second place in the SIU Liver Segmentation Challenge 2018, data of which is provided by Dokuz Eylül University. In this paper, some improvements for the post-processing step are also proposed…
University of Science and Technology of China（中国科学技术大学）；Tsinghua University（清华大学）；The Hong Kong University of Science and Technology（香港科技大学）
This paper proposes a convolutional neural network that can fuse high-level prior for semantic image segmentation. Motivated by humans' vision recognition system, our key design is a three-layer generative structure consisting of high-level coding, middle-level segmentation and low-level image to introduce global prior for semantic segmentation. Based on this structure, we proposed a generative model called conditional variational auto-encoder (CVAE) that can build up the links behind these three layers. These important links include an image encoder that extracts high level info from image, a…
Deep learning (DL) based semantic segmentation methods have been providing state-of-the-art performance in the last few years. More specifically, these techniques have been successfully applied to medical image classification, segmentation, and detection tasks. One deep learning technique, U-Net, has become one of the most popular for these applications. In this paper, we propose a Recurrent Convolutional Neural Network (RCNN) based on U-Net as well as a Recurrent Residual Convolutional Neural Network (RRCNN) based on U-Net models, which are named RU-Net and R2U-Net respectively. The proposed …
Northwestern Polytechnical University（西北工业大学）；University of Sydney（悉尼大学）；University of Pittsburgh（匹兹堡大学）；Royal Prince Alfred Hospital（皇家阿尔弗雷德亲王医院）
Advanced deep learning methods have been developed to conduct prostate MR volume segmentation in either a 2D or 3D fully convolutional manner. However, 2D methods tend to have limited segmentation performance, since large amounts of spatial information of prostate volumes are discarded during the slice-by-slice segmentation process; and 3D methods also have room for improvement, since they use isotropic kernels to perform 3D convolutions whereas most prostate MR volumes have anisotropic spatial resolution. Besides, the fully convolutional structural methods achieve good performance for localiz…
Many research works focus on leveraging the complementary geometric information of indoor depth sensors in vision tasks performed by deep convolutional neural networks, notably semantic segmentation. These works deal with a specific vision task known as "RGB-D Indoor Semantic Segmentation". The challenges and resulting solutions of this task differ from its standard RGB counterpart. This results in a new active research topic. The objective of this paper is to introduce the field of Deep Convolutional Neural Networks for RGB-D Indoor Semantic Segmentation. This review presents the most popular…
We propose a novel weakly-supervised semantic segmentation algorithm based on Deep Convolutional Neural Network (DCNN). Contrary to existing weakly-supervised approaches, our algorithm exploits auxiliary segmentation annotations available for different categories to guide segmentations on images with only image-level class labels. To make the segmentation knowledge transferrable across categories, we design a decoupled encoder-decoder architecture with attention model. In this architecture, the model generates spatial highlights of each category presented in an image using an attention model, …
Remote Sensing Technology Institute (IMF), German Aerospace Center (DLR)（德国航空航天中心（DLR）遥感技术研究所（IMF））；Signal Processing in Earth Observation (SiPEO), Technical University of Munich (TUM)（慕尼黑工业大学（TUM）地球观测信号处理（SiPEO））
Semantic segmentation in high resolution remote sensing images is a fundamental and challenging task. Convolutional neural networks (CNNs), such as fully convolutional network (FCN) and SegNet, have shown outstanding performance in many segmentation tasks. One key pillar of these successes is mining useful information from features in convolutional layers for producing high resolution segmentation maps. For example, FCN nonlinearly combines high-level features extracted from last convolutional layers; whereas SegNet utilizes a deconvolutional network which takes as input only coarse, high-leve…
Technische Universität München（慕尼黑工业大学）；Ludwig-Maximilians-University（路德维希-马克西米利安大学）；Indian Institute of Technology Kharagpur（印度理工学院克勒格布尔分校）；Johns Hopkins University（约翰斯·霍普金斯大学）
Optical coherence tomography (OCT) is used for non-invasive diagnosis of diabetic macular edema assessing the retinal layers. In this paper, we propose a new fully convolutional deep architecture, termed ReLayNet, for end-to-end segmentation of retinal layers and fluid masses in eye OCT scans. ReLayNet uses a contracting path of convolutional blocks (encoders) to learn a hierarchy of contextual features, followed by an expansive path of convolutional blocks (decoders) for semantic segmentation. ReLayNet is trained to optimize a joint loss function comprising of weighted logistic regression and…
We consider the problem of segmenting a biomedical image into anatomical regions of interest. We specifically address the frequent scenario where we have no paired training data that contains images and their manual segmentations. Instead, we employ unpaired segmentation images to build an anatomical prior. Critically these segmentations can be derived from imaging data from a different dataset and imaging modality than the current task. We introduce a generative probabilistic model that employs the learned prior through a convolutional neural network to compute segmentations in an unsupervise…
Convolutional Neural Networks (CNN) have emerged as powerful tools for learning discriminative image features. In this paper, we propose a framework of 3-D fully CNN models for Glioblastoma segmentation from multi-modality MRI data. By generalizing CNN models to true 3-D convolutions in learning 3-D tumor MRI data, the proposed approach utilizes a unique network architecture to decouple image pixels. Specifically, we design a convolutional layer with pre-defined Difference- of-Gaussian (DoG) filters to perform true 3-D convolution incorporating local neighborhood information at each pixel. We …
Ben-Gurion University（本-古里安大学）；The Kreitman School of Advanced Graduate Studies（克雷特曼高级研究生学院）
Live cell microscopy sequences exhibit complex spatial structures and complicated temporal behaviour, making their analysis a challenging task. Considering cell segmentation problem, which plays a significant role in the analysis, the spatial properties of the data can be captured using Convolutional Neural Networks (CNNs). Recent approaches show promising segmentation results using convolutional encoder-decoders such as the U-Net. Nevertheless, these methods are limited by their inability to incorporate temporal information, that can facilitate segmentation of individual touching cells or of …
Automated cardiac segmentation from magnetic resonance imaging datasets is an essential step in the timely diagnosis and management of cardiac pathologies. We propose to tackle the problem of automated left and right ventricle segmentation through the application of a deep fully convolutional neural network architecture. Our model is efficiently trained end-to-end in a single learning stage from whole-image inputs and ground truths to make inference at every pixel. To our knowledge, this is the first application of a fully convolutional neural network architecture for pixel-wise labeling in ca…
We present a fast algorithm for training MaxPooling Convolutional Networks to segment images. This type of network yields record-breaking performance in a variety of tasks, but is normally trained on a computationally expensive patch-by-patch basis. Our new method processes each training image in a single pass, which is vastly more efficient. We validate the approach in different scenarios and report a 1500-fold speed-up. In an application to automated steel defect detection and segmentation, we obtain excellent performance with short training times.
IMT School for Advanced Studies Lucca（卢卡IMT高等研究院）；Fondazione Gabriele Monasterio（加布里埃莱·莫纳斯特里奥基金会）；Azienda USL Toscana Nord Ovest (ATNO)（托斯卡纳西北部地方卫生局（ATNO））
Cluster of microcalcifications can be an early sign of breast cancer. In this paper we propose a novel approach based on convolutional neural networks for the detection and segmentation of microcalcification clusters. In this work we used 283 mammograms to train and validate our model, obtaining an accuracy of 98.22% in the detection of preliminary suspect regions and of 97.47% in the segmentation task. Our results show how deep learning could be an effective tool to effectively support radiologists during mammograms examination.
Technical University of Munich（慕尼黑工业大学）；German Aerospace Center (DLR)（德国航空航天中心）
Automatic building extraction from optical imagery remains a challenge due to, for example, the complexity of building shapes. Semantic segmentation is an efficient approach for this task. The latest development in deep convolutional neural networks (DCNNs) has made accurate pixel-level classification tasks possible. Yet one central issue remains: the precise delineation of boundaries. Deep architectures generally fail to produce fine-grained segmentation with accurate boundaries due to their progressive down-sampling. Hence, we introduce a generic framework to overcome the issue, integrating …
Segmentation of 3D images is a fundamental problem in biomedical image analysis. Deep learning (DL) approaches have achieved state-of-the-art segmentation perfor- mance. To exploit the 3D contexts using neural networks, known DL segmentation methods, including 3D convolution, 2D convolution on planes orthogonal to 2D image slices, and LSTM in multiple directions, all suffer incompatibility with the highly anisotropic dimensions in common 3D biomedical images. In this paper, we propose a new DL framework for 3D image segmentation, based on a com- bination of a fully convolutional network (FCN) …
University of Bonn（波恩大学）；University of Siegen（锡根大学）
Weakly supervised semantic segmentation has been a subject of increased interest due to the scarcity of fully annotated images. We introduce a new approach for solving weakly supervised semantic segmentation with deep Convolutional Neural Networks (CNNs). The method introduces a novel layer which applies simplex projection on the output of a neural network using area constraints of class objects. The proposed method is general and can be seamlessly integrated into any CNN architecture. Moreover, the projection layer allows strongly supervised models to be adapted to weakly supervised models ef…
In this paper, we develop a 2D and 3D segmentation pipelines for fully automated cardiac MR image segmentation using Deep Convolutional Neural Networks (CNN). Our models are trained end-to-end from scratch using the ACD Challenge 2017 dataset comprising of 100 studies, each containing Cardiac MR images in End Diastole and End Systole phase. We show that both our segmentation models achieve near state-of-the-art performance scores in terms of distance metrics and have convincing accuracy in terms of clinical parameters. A comparative analysis is provided by introducing a novel dice loss functio…
Convolutional Neural Networks (CNNs) have achieved promising results in medical image segmentation. However, CNNs require lots of training data and are incapable of handling pose and deformation of objects. Furthermore, their pooling layers tend to discard important information such as positions as well as CNNs are sensitive to rotation and affine transformation. Capsule network is a recent new architecture that has achieved better robustness in part-whole representation learning by replacing pooling layers with dynamic routing and convolutional strides, which has shown potential results on po…
Univ. Grenoble Alpes（格勒诺布尔阿尔卑斯大学）；Inria（法国国家信息与自动化研究所）；CNRS（法国国家科学研究中心）；Grenoble INP（格勒诺布尔国立高等物理、数学与信息学院）；New York University（纽约大学）；Facebook AI Research（Facebook人工智能研究院）
Anticipating future events is an important prerequisite towards intelligent behavior. Video forecasting has been studied as a proxy task towards this goal. Recent work has shown that to predict semantic segmentation of future frames, forecasting at the semantic level is more effective than forecasting RGB frames and then segmenting these. In this paper we consider the more challenging problem of future instance segmentation, which additionally segments out individual objects. To deal with a varying number of output labels per image, we develop a predictive model in the space of fixed-sized con…
School of Computer Science, Wuhan University（武汉大学计算机学院）
The clothing fashion reflects the common aesthetics that people share with each other in dressing. To recognize the fashion time of a clothing is meaningful for both an individual and the industry. In this paper, under the assumption that the clothing fashion changes year by year, the fashion-time recognition problem is mapped into a clothing-fashion classification problem. Specifically, a novel deep neural network is proposed which achieves accurate human body segmentation by fusing multi-scale convolutional features in a fully convolutional network, and then feature learning and fashion clas…
Fraunhofer MEVIS（弗劳恩霍夫医学图像计算研究所）；University of Bremen（不来梅大学）；Radboud University（拉德堡德大学）；Yokohama City University（横滨市立大学）
Various approaches for liver segmentation in CT have been proposed: Besides statistical shape models, which played a major role in this research area, novel approaches on the basis of convolutional neural networks have been introduced recently. Using a set of 219 liver CT datasets with reference segmentations from liver surgery planning, we evaluate the performance of several neural network classifiers based on 2D and 3D U-net architectures. An interesting observation is that slice-wise approaches perform surprisingly well, with mean and median Dice coefficients above 0.97, and may be preferab…
Lehigh University（理海大学）；Hainan University（海南大学）；Tianjin University（天津大学）；Wuhan University（武汉大学）；Massachusetts General Hospital（麻省总医院）；Harvard Medical School（哈佛医学院）
Convolutional neural networks are powerful tools for image segmentation and classification. Here, we use this method to identify and mark the heart region of Drosophila at different developmental stages in the cross-sectional images acquired by a custom optical coherence microscopy (OCM) system. With our well-trained convolutional neural network model, the heart regions through multiple heartbeat cycles can be marked with an intersection over union (IOU) of ~86%. Various morphological and dynamical cardiac parameters can be quantified accurately with automatically segmented heart regions. This…
Erasmus MC（伊拉斯谟大学医学中心）；Erasmus MC-Sophia Children Hospital（伊拉斯谟大学医学中心-索菲亚儿童医院）；University of Copenhagen（哥本哈根大学）
Segmentation of the airway tree from chest computed tomography (CT) images is critical for quantitative assessment of airway diseases including bronchiectasis and chronic obstructive pulmonary disease (COPD). However, obtaining an accurate segmentation of airways from CT scans is difficult due to the high complexity of airway structures. Recently, deep convolutional neural networks (CNNs) have become the state-of-the-art for many segmentation tasks, and in particular the so-called Unet architecture for biomedical images. However, its application to the segmentation of airways still remains a c…
University of Chinese Academy of Sciences（中国科学院大学）
Foreground segmentation in video sequences is a classic topic in computer vision. Due to the lack of semantic and prior knowledge, it is difficult for existing methods to deal with sophisticated scenes well. Therefore, in this paper, we propose an end-to-end two-stage deep convolutional neural network (CNN) framework for foreground segmentation in video sequences. In the first stage, a convolutional encoder-decoder sub-network is employed to reconstruct the background images and encode rich prior knowledge of background scenes. In the second stage, the reconstructed background and current fram…
Liver lesion segmentation is an important step for liver cancer diagnosis, treatment planning and treatment evaluation. LiTS (Liver Tumor Segmentation Challenge) provides a common testbed for comparing different automatic liver lesion segmentation methods. We participate in this challenge by developing a deep convolutional neural network (DCNN) method. The particular DCNN model works in 2.5D in that it takes a stack of adjacent slices as input and produces the segmentation map corresponding to the center slice. The model has 32 layers in total and makes use of both long range concatenation con…
Isfahan University of Technology（伊斯法罕理工大学）；University of Michigan（密歇根大学）
Retinal vessel information is helpful in retinal disease screening and diagnosis. Retinal vessel segmentation provides useful information about vessels and can be used by physicians during intraocular surgery and retinal diagnostic operations. Convolutional neural networks (CNNs) are powerful tools for classification and segmentation of medical images. Complexity of CNNs makes it difficult to implement them in portable devices such as binocular indirect ophthalmoscopes. In this paper a simplification approach is proposed for CNNs based on combination of quantization and pruning. Fully connecte…
Action segmentation as a milestone towards building automatic systems to understand untrimmed videos has received considerable attention in the recent years. It is typically being modeled as a sequence labeling problem but contains intrinsic and sufficient differences than text parsing or speech processing. In this paper, we introduce a novel hybrid temporal convolutional and recurrent network (TricorNet), which has an encoder-decoder architecture: the encoder consists of a hierarchy of temporal convolutional kernels that capture the local motion changes of different actions; the decoder is a …
A variety of deep neural networks have been applied in medical image segmentation and achieve good performance. Unlike natural images, medical images of the same imaging modality are characterized by the same pattern, which indicates that same normal organs or tissues locate at similar positions in the images. Thus, in this paper we try to incorporate the prior knowledge of medical images into the structure of neural networks such that the prior knowledge can be utilized for accurate segmentation. Based on this idea, we propose a novel deep network called knowledge-based fully convolutional ne…
Data Science Institute, Imperial College London（伦敦帝国理工学院数据科学研究所）；National Heart and Lung Institute, Imperial College London（伦敦帝国理工学院国家心肺研究所）
A major challenge in brain tumor treatment planning and quantitative evaluation is determination of the tumor extent. The noninvasive magnetic resonance imaging (MRI) technique has emerged as a front-line diagnostic tool for brain tumors without ionizing radiation. Manual segmentation of brain tumor extent from 3D MRI volumes is a very time-consuming task and the performance is highly relied on operator's experience. In this context, a reliable fully automatic segmentation method for the brain tumor segmentation is necessary for an efficient measurement of the tumor extent. In this study, we p…
Traditional pedestrian collision warning systems sometimes raise alarms even when there is no danger (e.g., when all pedestrians are walking on the sidewalk). These false alarms can make it difficult for drivers to concentrate on their driving. In this paper, we propose a novel framework for an end-to-end pedestrian collision warning system based on a convolutional neural network. Semantic segmentation information is used to train the convolutional neural network and two loss functions, such as cross entropy and Euclidean losses, are minimized. Finally, we demonstrate the effectiveness of our …
Institute for Surgical Technology \& Biomechanics, University of Bern, Bern, Switzerland. Contact
We present a method to address the challenging problem of segmentation of lumbar vertebrae from CT images acquired with varying fields of view. Our method is based on cascaded 3D Fully Convolutional Networks (FCNs) consisting of a localization FCN and a segmentation FCN. More specifically, in the first step we train a regression 3D FCN (we call it "LocalizationNet") to find the bounding box of the lumbar region. After that, a 3D U-net like FCN (we call it "SegmentationNet") is then developed, which after training, can perform a pixel-wise multi-class segmentation to map a cropped lumber region…
We present SegNeXt, a simple convolutional network architecture for semantic segmentation. Recent transformer-based models have dominated the field of semantic segmentation due to the efficiency of self-attention in encoding spatial information. In this paper, we show that convolutional attention is a more efficient and effective way to encode contextual information than the self-attention mechanism in transformers. By re-examining the characteristics owned by successful segmentation models, we discover several key components leading to the performance improvement of segmentation models. This …
In this paper, we propose a fast fully convolutional neural network (FCNN) for crowd segmentation. By replacing the fully connected layers in CNN with 1 by 1 convolution kernels, FCNN takes whole images as inputs and directly outputs segmentation maps by one pass of forward propagation. It has the property of translation invariance like patch-by-patch scanning but with much lower computation cost. Once FCNN is learned, it can process input images of any sizes without warping them to a standard size. These attractive properties make it extendable to other general image segmentation problems. Ba…
