Segmentation of 3D images is a fundamental problem in biomedical image analysis. Deep learning (DL) approaches have achieved state-of-the-art segmentation perfor- mance. To exploit the 3D contexts using neural networks, known DL segmentation methods, including 3D convolution, 2D convolution on planes orthogonal to 2D image slices, and LSTM in multiple directions, all suffer incompatibility with the highly anisotropic dimensions in common 3D biomedical images. In this paper, we propose a new DL framework for 3D image segmentation, based on a com- bination of a fully convolutional network (FCN) and a recurrent neural network (RNN), which are responsible for exploiting the intra-slice and inter-slice contexts, respectively. To our best knowledge, this is the first DL framework for 3D image segmentation that explicitly leverages 3D image anisotropism. Evaluating using a dataset from the ISBI Neuronal Structure Segmentation Challenge and in-house image stacks for 3D fungus segmentation, our approach achieves promising results comparing to the known DL-based 3D segmentation approaches.
In the biomedical domain, there is an abundance of dense, complex data where objects of interest may be challenging to detect or constrained by limits of human knowledge. Labelled domain specific datasets for supervised tasks are often expensive to obtain, and furthermore discovery of novel distinct objects may be desirable for unbiased scientific discovery. Therefore, we propose leveraging the wealth of annotations in benchmark computer vision datasets to conduct unsupervised instance segmentation for diverse biomedical datasets. The key obstacle is thus overcoming the large domain shift from…
University of Freiburg（弗莱堡大学）；BIOSS Centre for Biological Signalling Studies（BIOSS生物信号研究中心）
There is large consent that successful training of deep networks requires many thousand annotated training samples. In this paper, we present a network and training strategy that relies on the strong use of data augmentation to use the available annotated samples more efficiently. The architecture consists of a contracting path to capture context and a symmetric expanding path that enables precise localization. We show that such a network can be trained end-to-end from very few images and outperforms the prior best method (a sliding-window convolutional network) on the ISBI challenge for segme…
Huazhong University of Science and Technology（华中科技大学）
With pervasive applications of medical imaging in health-care, biomedical image segmentation plays a central role in quantitative analysis, clinical diagno- sis, and medical intervention. Since manual anno- tation su ers limited reproducibility, arduous e orts, and excessive time, automatic segmentation is desired to process increasingly larger scale histopathological data. Recently, deep neural networks (DNNs), par- ticularly fully convolutional networks (FCNs), have been widely applied to biomedical image segmenta- tion, attaining much improved performance. At the same time, quantization of …
Image segmentation is an important step in most visual tasks. While convolutional neural networks have shown to perform well on single image segmentation, to our knowledge, no study has been been done on leveraging recurrent gated architectures for video segmentation. Accordingly, we propose a novel method for online segmentation of video sequences that incorporates temporal data. The network is built from fully convolutional element and recurrent unit that works on a sliding window over the temporal data. We also introduce a novel convolutional gated recurrent unit that preserves the spatial …
Semantic segmentation has recently witnessed major progress, where fully convolutional neural networks have shown to perform well. However, most of the previous work focused on improving single image segmentation. To our knowledge, no prior work has made use of temporal video information in a recurrent network. In this paper, we introduce a novel approach to implicitly utilize temporal data in videos for online semantic segmentation. The method relies on a fully convolutional network that is embedded into a gated recurrent architecture. This design receives a sequence of consecutive video fram…
Concordia Institute for Information Systems Engineering（康考迪亚信息系统工程研究院）；Concordia University（康考迪亚大学）
The U-Net architecture, built upon the fully convolutional network, has proven to be effective in biomedical image segmentation. However, U-Net applies skip connections to merge semantically different low- and high-level convolutional features, resulting in not only blurred feature maps, but also over- and under-segmented target regions. To address these limitations, we propose a simple, yet effective end-to-end depthwise encoder-decoder fully convolutional network architecture, called Sharp U-Net, for binary and multi-class biomedical image segmentation. The key rationale of Sharp U-Net is th…
Deep learning (DL) based semantic segmentation methods have been providing state-of-the-art performance in the last few years. More specifically, these techniques have been successfully applied to medical image classification, segmentation, and detection tasks. One deep learning technique, U-Net, has become one of the most popular for these applications. In this paper, we propose a Recurrent Convolutional Neural Network (RCNN) based on U-Net as well as a Recurrent Residual Convolutional Neural Network (RRCNN) based on U-Net models, which are named RU-Net and R2U-Net respectively. The proposed …
Radboud University, Donders Institute for Brain, Cognition and Behaviour（拉德堡德大学，唐德斯脑、认知与行为研究所）；Universitat Autònoma de Barcelona（巴塞罗那自治大学）；Computer Vision Center（计算机视觉中心）；Universitat de Barcelona（巴塞罗那大学）；Universitat Oberta de Catalunya（加泰罗尼亚开放大学）
Recent years have seen a sharp increase in the number of related yet distinct advances in semantic segmentation. Here, we tackle this problem by leveraging the respective strengths of these advances. That is, we formulate a conditional random field over a four-connected graph as end-to-end trainable convolutional and recurrent networks, and estimate them via an adversarial process. Importantly, our model learns not only unary potentials but also pairwise potentials, while aggregating multi-scale contexts and controlling higher-order inconsistencies. We evaluate our model on two standard benchm…
German Aerospace Center (DLR)（德国航空航天中心）；Technical University of Munich (TUM)（慕尼黑工业大学）；University of Trento（特伦托大学）
Change detection is one of the central problems in earth observation and was extensively investigated over recent decades. In this paper, we propose a novel recurrent convolutional neural network (ReCNN) architecture, which is trained to learn a joint spectral-spatial-temporal feature representation in a unified framework for change detection in multispectral images. To this end, we bring together a convolutional neural network (CNN) and a recurrent neural network (RNN) into one end-to-end network. The former is able to generate rich spectral-spatial feature representations, while the latter e…
Hamlyn Centre for Robotic Surgery（哈姆林机器人手术中心）；Imperial College London（伦敦帝国理工学院）
2D biomedical semantic segmentation is important for robotic vision in surgery. Segmentation methods based on Deep Convolutional Neural Network (DCNN) can out-perform conventional methods in terms of both accuracy and levels of automation. One common issue in training a DCNN for biomedical semantic segmentation is the internal covariate shift where the training of convolutional kernels is encumbered by the distribution change of input features, hence both the training speed and performance are decreased. Batch Normalization (BN) is the first proposed method for addressing internal covariate sh…
The Chinese University of Hong Kong（香港中文大学）；University of Michigan（密歇根大学）；Imsight Medical Technology Inc.（Imsight医疗科技公司）
Convolutional networks (ConvNets) have achieved great successes in various challenging vision tasks. However, the performance of ConvNets would degrade when encountering the domain shift. The domain adaptation is more significant while challenging in the field of biomedical image analysis, where cross-modality data have largely different distributions. Given that annotating the medical data is especially expensive, the supervised transfer learning approaches are not quite optimal. In this paper, we propose an unsupervised domain adaptation framework with adversarial learning for cross-modality…
Washington University School of Medicine（华盛顿大学医学院）
Deep Learning networks have established themselves as providing state of art performance for semantic segmentation. These techniques are widely applied specifically to medical detection, segmentation and classification. The advent of the U-Net based architecture has become particularly popular for this application. In this paper we present the Dense Recurrent Residual Convolutional Neural Network(Dense R2U CNN) which is a synthesis of Recurrent CNN, Residual Network and Dense Convolutional Network based on the U-Net model architecture. The residual unit helps training deeper network, while the…
Boston University School of Medicine（波士顿大学医学院）；Academic Medical Center（学术医学中心）；Leiden University Medical Center（莱顿大学医学中心）；University of Amsterdam（阿姆斯特丹大学）；Arkana laboratories（Arkana实验室）；Amsterdam Cardiovascular Sciences（阿姆斯特丹心血管科学）；Veterans Affairs Boston Healthcare System（退伍军人事务部波士顿医疗系统）；Boston University（波士顿大学）
Development of deep learning systems for biomedical segmentation often requires access to expert-driven, manually annotated datasets. If more than a single expert is involved in the annotation of the same images, then the inter-expert agreement is not necessarily perfect, and no single expert annotation can precisely capture the so-called ground truth of the regions of interest on all images. Also, it is not trivial to generate a reference estimate using annotations from multiple experts. Here we present a deep neural network, defined as U-Net-and-a-half, which can simultaneously learn from an…
TU Dresden（德累斯顿工业大学）；AICURA medical GmbH（AICURA医疗有限公司）；National Center of Tumor Diseases (NCT)（国家肿瘤疾病中心）；Max Planck Institute for Human Cognitive and Brain Sciences（马克斯·普朗克人类认知与脑科学研究所）
In recent years, Convolutional Neural Networks (CNNs) have become the state-of-the-art method for biomedical image analysis. However, these networks are usually trained in a supervised manner, requiring large amounts of labelled training data. These labelled data sets are often difficult to acquire in the biomedical domain. In this work, we validate alternative ways to train CNNs with fewer labels for biomedical image segmentation using. We adapt two semi- and self-supervised image classification methods and analyse their performance for semantic segmentation of biomedical microscopy images.
minoHealth AI Labs（minoHealth人工智能实验室）；Old Dominion University（奥多明尼昂大学）
We developed a Convolutional Neural Network model to identify and classify Airbrushed (alternatively known as Blow-spun), Electrospun and Steel Wire scaffolds. Our model ScaffoldNet is a 6-layer Convolutional Neural Network trained and tested on 3,043 images of Airbrushed, Electrospun and Steel Wire scaffolds. The model takes in as input an imaged scaffold and then outputs the scaffold type (Airbrushed, Electrospun or Steel Wire) as predicted probabilities for the 3 classes. Our model scored a 99.44% Accuracy, demonstrating potential for adaptation to investigating and solving complex machine …
We consider the problem of segmenting a biomedical image into anatomical regions of interest. We specifically address the frequent scenario where we have no paired training data that contains images and their manual segmentations. Instead, we employ unpaired segmentation images to build an anatomical prior. Critically these segmentations can be derived from imaging data from a different dataset and imaging modality than the current task. We introduce a generative probabilistic model that employs the learned prior through a convolutional neural network to compute segmentations in an unsupervise…
National Taiwan University（台湾大学）；GE Global Research（GE全球研究中心）
Deep learning models such as convolutional neural net- work have been widely used in 3D biomedical segmentation and achieve state-of-the-art performance. However, most of them often adapt a single modality or stack multiple modalities as different input channels. To better leverage the multi- modalities, we propose a deep encoder-decoder structure with cross-modality convolution layers to incorporate different modalities of MRI data. In addition, we exploit convolutional LSTM to model a sequence of 2D slices, and jointly learn the multi-modalities and convolutional LSTM in an end-to-end manner…
Politecnico di Milano（米兰理工大学）；University of Montreal（蒙特利尔大学）
In this paper, we propose a deep neural network architecture for object recognition based on recurrent neural networks. The proposed network, called ReNet, replaces the ubiquitous convolution+pooling layer of the deep convolutional neural network with four recurrent neural networks that sweep horizontally and vertically in both directions across the image. We evaluate the proposed ReNet on three widely-used benchmark datasets; MNIST, CIFAR-10 and SVHN. The result suggests that ReNet is a viable alternative to the deep convolutional neural network, and that further investigation is needed.
University of Missouri（密苏里大学）；TCL Research America（TCL美国研究院）
In this paper, we develop a new approach of spatially supervised recurrent convolutional neural networks for visual object tracking. Our recurrent convolutional network exploits the history of locations as well as the distinctive visual features learned by the deep neural networks. Inspired by recent bounding box regression methods for object detection, we study the regression capability of Long Short-Term Memory (LSTM) in the temporal domain, and propose to concatenate high-level visual features produced by convolutional networks with region information. In contrast to existing deep learning …
University of Oxford（牛津大学）；Tsinghua University（清华大学）
The convolutional neural network (CNN) has become a basic model for solving many computer vision problems. In recent years, a new class of CNNs, recurrent convolution neural network (RCNN), inspired by abundant recurrent connections in the visual systems of animals, was proposed. The critical element of RCNN is the recurrent convolutional layer (RCL), which incorporates recurrent connections between neurons in the standard convolutional layer. With increasing number of recurrent computations, the receptive fields (RFs) of neurons in RCL expand unboundedly, which is inconsistent with biological…
Action segmentation as a milestone towards building automatic systems to understand untrimmed videos has received considerable attention in the recent years. It is typically being modeled as a sequence labeling problem but contains intrinsic and sufficient differences than text parsing or speech processing. In this paper, we introduce a novel hybrid temporal convolutional and recurrent network (TricorNet), which has an encoder-decoder architecture: the encoder consists of a hierarchy of temporal convolutional kernels that capture the local motion changes of different actions; the decoder is a …
This paper proposes a novel saliency detection method by developing a deeply-supervised recurrent convolutional neural network (DSRCNN), which performs a full image-to-image saliency prediction. For saliency detection, the local, global, and contextual information of salient objects is important to obtain a high quality salient map. To achieve this goal, the DSRCNN is designed based on VGGNet-16. Firstly, the recurrent connections are incorporated into each convolutional layer, which can make the model more powerful for learning the contextual information. Secondly, side-output layers are adde…
Korea Advanced Institute of Science and Technology（韩国科学技术院）；Okinawa Institute of Science and Technology Graduate University（冲绳科学技术大学院大学）
Based on the progress of image recognition, video recognition has been extensively studied recently. However, most of the existing methods are focused on short-term but not long-term video recognition, called contextual video recognition. To address contextual video recognition, we use convolutional recurrent neural networks (ConvRNNs) having a rich spatio-temporal information processing capability, but ConvRNNs requires extensive computation that slows down training. In this paper, inspired by the normalization and detrending methods, we propose adaptive detrending (AD) for temporal normaliza…
Deep convolutional neural networks (DCNNs) are an influential tool for solving various problems in the machine learning and computer vision fields. In this paper, we introduce a new deep learning model called an Inception- Recurrent Convolutional Neural Network (IRCNN), which utilizes the power of an inception network combined with recurrent layers in DCNN architecture. We have empirically evaluated the recognition performance of the proposed IRCNN model using different benchmark datasets such as MNIST, CIFAR-10, CIFAR- 100, and SVHN. Experimental results show similar or higher recognition acc…
Uber Advanced Technologies Group（优步先进技术集团）；MIT（麻省理工学院）；University of Toronto（多伦多大学）
Creating high definition maps that contain precise information of static elements of the scene is of utmost importance for enabling self driving cars to drive safely. In this paper, we tackle the problem of drivable road boundary extraction from LiDAR and camera imagery. Towards this goal, we design a structured model where a fully convolutional network obtains deep features encoding the location and direction of road boundaries and then, a convolutional recurrent network outputs a polyline representation for each one of them. Importantly, our method is fully automatic and does not require a u…
University of Southern California（南加州大学）；US Army Research Laboratory（美国陆军研究实验室）
Recent advances in convolutional neural networks have shown promising results in 3D shape completion. But due to GPU memory limitations, these methods can only produce low-resolution outputs. To inpaint 3D models with semantic plausibility and contextual details, we introduce a hybrid framework that combines a 3D Encoder-Decoder Generative Adversarial Network (3D-ED-GAN) and a Long-term Recurrent Convolutional Network (LRCN). The 3D-ED-GAN is a 3D convolutional neural network trained with a generative adversarial paradigm to fill missing 3D data in low-resolution. LRCN adopts a recurrent neura…
Ping An Technology(Shenzhen) Co.,Ltd（平安科技（深圳）有限公司）；University College London（伦敦大学学院）
One of the challenges of the Optical Music Recognition task is to transcript the symbols of the camera-captured images into digital music notations. Previous end-to-end model which was developed as a Convolutional Recurrent Neural Network does not explore sufficient contextual information from full scales and there is still a large room for improvement. We propose an innovative framework that combines a block of Residual Recurrent Convolutional Neural Network with a recurrent Encoder-Decoder network to map a sequence of monophonic music symbols corresponding to the notations present in the ima…
Existing deep convolutional neural networks (CNNs) have shown their great success on image classification. CNNs mainly consist of convolutional and pooling layers, both of which are performed on local image areas without considering the dependencies among different image regions. However, such dependencies are very important for generating explicit image representation. In contrast, recurrent neural networks (RNNs) are well known for their ability of encoding contextual information among sequential data, and they only require a limited number of network parameters. General RNNs can hardly be d…
In this work, we jointly address the problem of text detection and recognition in natural scene images based on convolutional recurrent neural networks. We propose a unified network that simultaneously localizes and recognizes text with a single forward pass, avoiding intermediate processes like image cropping and feature re-calculation, word separation, or character grouping. In contrast to existing approaches that consider text detection and recognition as two distinct tasks and tackle them one by one, the proposed framework settles these two tasks concurrently. The whole framework can be tr…
Vasculature is known to be of key biological significance, especially in the study of cancer. As such, considerable effort has been focused on the automated measurement and analysis of vasculature in medical and pre-clinical images. In tumors in particular, the vascular networks may be extremely irregular and the appearance of the individual vessels may not conform to classical descriptions of vascular appearance. Typically, vessels are extracted by either a segmentation and thinning pipeline, or by direct tracking. Neither of these methods are well suited to microscopy images of tumor vascula…
Models based on deep convolutional networks have dominated recent image interpretation tasks; we investigate whether models which are also recurrent, or "temporally deep", are effective for tasks involving sequences, visual and otherwise. We develop a novel recurrent convolutional architecture suitable for large-scale visual learning which is end-to-end trainable, and demonstrate the value of these models on benchmark video recognition tasks, image description and retrieval problems, and video narration challenges. In contrast to current models which assume a fixed spatio-temporal receptive fi…
Max Planck Institute for Intelligent Systems（马克斯·普朗克智能系统研究所）；ETH Zurich（苏黎世联邦理工学院）；Universidade de Coimbra（科英布拉大学）
Ingestible wireless capsule endoscopy is an emerging minimally invasive diagnostic technology for inspection of the GI tract and diagnosis of a wide range of diseases and pathologies. Medical device companies and many research groups have recently made substantial progresses in converting passive capsule endoscopes to active capsule robots, enabling more accurate, precise, and intuitive detection of the location and size of the diseased areas. Since a reliable real time pose estimation functionality is crucial for actively controlled endoscopic capsule robots, in this study, we propose a monoc…
Xi’an Jiaotong University（西安交通大学）；The First Affiliated Hospital of Xi’an Jiaotong University（西安交通大学第一附属医院）
Constructing large-scaled medical knowledge graphs can significantly boost healthcare applications for medical surveillance, bring much attention from recent research. An essential step in constructing large-scale MKG is extracting information from medical reports. Recently, information extraction techniques have been proposed and show promising performance in biomedical information extraction. However, these methods only consider limited types of entity and relation due to the noisy biomedical text data with complex entity correlations. Thus, they fail to provide enough information for constr…
The Deep Convolutional Neural Network (DCNN) is one of the most powerful and successful deep learning approaches. DCNNs have already provided superior performance in different modalities of medical imaging including breast cancer classification, segmentation, and detection. Breast cancer is one of the most common and dangerous cancers impacting women worldwide. In this paper, we have proposed a method for breast cancer classification with the Inception Recurrent Residual Convolutional Neural Network (IRRCNN) model. The IRRCNN is a powerful DCNN model that combines the strength of the Inception…
The use of latent variable models has shown to be a powerful tool for modeling probability distributions over sequences. In this paper, we introduce a new variational model that extends the recurrent network in two ways for the task of video frame prediction. First, we introduce 3D convolutions inside all modules including the recurrent model for future frame prediction, inputting and outputting a sequence of video frames at each timestep. This enables us to better exploit spatiotemporal information inside the variational recurrent model, allowing us to generate high-quality predictions. Secon…
Hasso Plattner Institute, University of Potsdam（波茨坦大学哈索·普拉特纳研究院）
Language Identification (LID) systems are used to classify the spoken language from a given audio sample and are typically the first step for many spoken language processing tasks, such as Automatic Speech Recognition (ASR) systems. Without automatic language detection, speech utterances cannot be parsed correctly and grammar rules cannot be applied, causing subsequent speech recognition steps to fail. We propose a LID system that solves the problem in the image domain, rather than the audio domain. We use a hybrid Convolutional Recurrent Neural Network (CRNN) that operates on spectrogram imag…
University of Oulu（奥卢大学）；Beijing University of Posts and Telecommunications（北京邮电大学）
Automatic pain intensity estimation possesses a significant position in healthcare and medical field. Traditional static methods prefer to extract features from frames separately in a video, which would result in unstable changes and peaks among adjacent frames. To overcome this problem, we propose a real-time regression framework based on the recurrent convolutional neural network for automatic frame-level pain intensity estimation. Given vector sequences of AAM-warped facial images, we used a sliding-window strategy to obtain fixed-length input samples for the recurrent network. We then care…
In this paper, we present an end-to-end approach to simultaneously learn spatio-temporal features and corresponding similarity metric for video-based person re-identification. Given the video sequence of a person, features from each frame that are extracted from all levels of a deep convolutional network can preserve a higher spatial resolution from which we can model finer motion patterns. These low-level visual percepts are leveraged into a variant of recurrent model to characterize the temporal variation between time-steps. Features from all time-steps are then summarized using temporal poo…
Cancers are the leading cause of death in many countries. Early diagnosis plays a crucial role in having proper treatment for this debilitating disease. The automated classification of the type of cancer is a challenging task since pathologists must examine a huge number of histopathological images to detect infinitesimal abnormalities. In this study, we propose a novel convolutional neural network (CNN) architecture composed of a Concatenation of multiple Networks, called C-Net, to classify biomedical images. The model incorporates multiple CNNs including Outer, Middle, and Inner. The first t…
Tsinghua University（清华大学）；National University of Singapore（新加坡国立大学）
Recent years have witnessed the great success of convolutional neural network (CNN) based models in the field of computer vision. CNN is able to learn hierarchically abstracted features from images in an end-to-end training manner. However, most of the existing CNN models only learn features through a feedforward structure and no feedback information from top to bottom layers is exploited to enable the networks to refine themselves. In this paper, we propose a "Learning with Rethinking" algorithm. By adding a feedback layer and producing the emphasis vector, the model is able to recurrently bo…
Northwestern Polytechnical University（西北工业大学）；Chinese Academy of Sciences（中国科学院）；University of Oulu（奥卢大学）
Recently, the recognition task of spontaneous facial micro-expressions has attracted much attention with its various real-world applications. Plenty of handcrafted or learned features have been employed for a variety of classifiers and achieved promising performances for recognizing micro-expressions. However, the micro-expression recognition is still challenging due to the subtle spatiotemporal changes of micro-expressions. To exploit the merits of deep learning, we propose a novel deep recurrent convolutional networks based micro-expression recognition approach, capturing the spatial-tempora…
National Institute of Technology, Silchar（锡尔卡尔国家理工学院）
Recently Convolutional Neural Networks have been proposed for Sequence Modelling tasks such as Image Caption Generation. However, unlike Recurrent Neural Networks, the performance of Convolutional Neural Networks as Decoders for Image Caption Generation has not been extensively studied. In this work, we analyse various aspects of Convolutional Neural Network based Decoders such as Network complexity and depth, use of Data Augmentation, Attention mechanism, length of sentences used during training, etc on performance of the model. We perform experiments using Flickr8k and Flickr30k image captio…
Electroencephalography (EEG) has become the most significant input signal for brain computer interface (BCI) based systems. However, it is very difficult to obtain satisfactory classification accuracy due to traditional methods can not fully exploit multimodal information. Herein, we propose a novel approach to modeling cognitive events from EEG data by reducing it to a video classification problem, which is designed to preserve the multimodal information of EEG. In addition, optical flow is introduced to represent the variant information of EEG. We train a deep neural network (DNN) with convo…
Classification of very high resolution (VHR) satellite images has three major challenges: 1) inherent low intra-class and high inter-class spectral similarities, 2) mismatching resolution of available bands, and 3) the need to regularize noisy classification maps. Conventional methods have addressed these challenges by adopting separate stages of image fusion, feature extraction, and post-classification map regularization. These processing stages, however, are not jointly optimizing the classification task at hand. In this study, we propose a single-stage framework embedding the processing sta…
Automation and Control Institute (ACIN), TU Wien（维也纳技术大学自动化与控制研究所）；Italian Institute of Technology（意大利理工学院）
Providing machines with the ability to recognize objects like humans has always been one of the primary goals of machine vision. The introduction of RGB-D cameras has paved the way for a significant leap forward in this direction thanks to the rich information provided by these sensors. However, the machine vision community still lacks an effective method to synergically use the RGB and depth data to improve object recognition. In order to take a step in this direction, we introduce a novel end-to-end architecture for RGB-D object recognition called recurrent convolutional fusion (RCFusion). O…
Northeastern University（东北大学）；Memorial Sloan Kettering Cancer Center（纪念斯隆凯特琳癌症中心）；Caliber I.D. Inc.（Caliber I.D.公司）
Reflectance confocal microscopy (RCM) is an effective, non-invasive pre-screening tool for skin cancer diagnosis, but it requires extensive training and experience to assess accurately. There are few quantitative tools available to standardize image acquisition and analysis, and the ones that are available are not interpretable. In this study, we use a recurrent neural network with attention on convolutional network features. We apply it to delineate skin strata in vertically-oriented stacks of transverse RCM image slices in an interpretable manner. We introduce a new attention mechanism calle…
Carney Institute for Brain Science（卡尼脑科学研究所）；Brown University（布朗大学）
Recent successes in deep learning have started to impact neuroscience. Of particular significance are claims that current segmentation algorithms achieve "super-human" accuracy in an area known as connectomics. However, as we will show, these algorithms do not effectively generalize beyond the particular source and brain tissues used for training -- severely limiting their usability by the broader neuroscience community. To fill this gap, we describe a novel connectomics challenge for source- and tissue-agnostic reconstruction of neurons (STAR), which favors broad generalization over fitting s…
Text recognition in natural scene is a challenging problem due to the many factors affecting text appearance. In this paper, we presents a method that directly transcribes scene text images to text without needing of sophisticated character segmentation. We leverage recent advances of deep neural networks to model the appearance of scene text images with temporal dynamics. Specifically, we integrates convolutional neural network (CNN) and recurrent neural network (RNN) which is motivated by observing the complementary modeling capabilities of the two models. The main contribution of this work …
We introduce a stop-code tolerant (SCT) approach to training recurrent convolutional neural networks for lossy image compression. Our methods introduce a multi-pass training method to combine the training goals of high-quality reconstructions in areas around stop-code masking as well as in highly-detailed areas. These methods lead to lower true bitrates for a given recursion count, both pre- and post-entropy coding, even using unstructured LZ77 code compression. The pre-LZ77 gains are achieved by trimming stop codes. The post-LZ77 gains are due to the highly unequal distributions of 0/1 codes …
This paper proposes an end-to-end framework, namely fully convolutional recurrent network (FCRN) for handwritten Chinese text recognition (HCTR). Unlike traditional methods that rely heavily on segmentation, our FCRN is trained with online text data directly and learns to associate the pen-tip trajectory with a sequence of characters. FCRN consists of four parts: a path-signature layer to extract signature features from the input pen-tip trajectory, a fully convolutional network to learn informative representation, a sequence modeling layer to make per-frame predictions on the input sequence a…
Imperial College London（帝国理工学院）；The University of Edinburgh（爱丁堡大学）
Dynamical systems can be modelled by partial differential equations and numerical computations are used everywhere in science and engineering. In this work, we investigate the performance of recurrent and convolutional deep neural network architectures to predict the surface waves. The system is governed by the Saint-Venant equations. We improve on the long-term prediction over previous methods while keeping the inference time at a fraction of numerical simulations. We also show that convolutional networks perform at least as well as recurrent networks in this task. Finally, we assess the gene…
University Medical Center Groningen（格罗宁根大学医学中心）；University of Groningen（格罗宁根大学）；Department of Oral and Maxillofacial Surgery（口腔颌面外科）；Medical Imaging Center (MIC)（医学影像中心）；D Lab（3D实验室）
Recently, accurate mandible segmentation in CT scans based on deep learning methods has attracted much attention. However, there still exist two major challenges, namely, metal artifacts among mandibles and large variations in shape or size among individuals. To address these two challenges, we propose a recurrent segmentation convolutional neural network (RSegCNN) that embeds segmentation convolutional neural network (SegCNN) into the recurrent neural network (RNN) for robust and accurate segmentation of the mandible. Such a design of the system takes into account the similarity and continuit…
A reliable sense-and-avoid system is critical to enabling safe autonomous operation of unmanned aircraft. Existing sense-and-avoid methods often require specialized sensors that are too large or power intensive for use on small unmanned vehicles. This paper presents a method to estimate object distances based on visual image sequences, allowing for the use of low-cost, on-board monocular cameras as simple collision avoidance sensors. We present a deep recurrent convolutional neural network and training method to generate depth maps from video sequences. Our network is trained using simulated c…
Bosch Center for Artificial Intelligence（博世人工智能中心）；University of Bonn（波恩大学）
Generating a robust representation of the environment is a crucial ability of learning agents. Deep learning based methods have greatly improved perception systems but still fail in challenging situations. These failures are often not solvable on the basis of a single image. In this work, we present a parameter-efficient temporal filtering concept which extends an existing single-frame segmentation model to work with multiple frames. The resulting recurrent architecture temporally filters representations on all abstraction levels in a hierarchical manner, while decoupling temporal dependencies…
The Ubicomp Digital 2020 -- Time Series Classification Challenge from STABILO is a challenge about multi-variate time series classification. The data collected from 100 volunteer writers, and contains 15 features measured with multiple sensors on a pen. In this paper,we use a neural network to classify the data into 52 classes, that is lower and upper cases of Arabic letters. The proposed architecture of the neural network a is CNN-LSTM network. It combines convolutional neural network (CNN) for short term context with along short term memory layer (LSTM) for also long term dependencies. We re…
University of Manchester（曼彻斯特大学）；University of Sheffield（谢菲尔德大学）
High resolution diffusion MRI (dMRI) data is often constrained by limited scanning time in clinical settings, thus restricting the use of downstream analysis techniques that would otherwise be available. In this work we develop a 3D recurrent convolutional neural network (RCNN) capable of super-resolving dMRI volumes in the angular (q-space) domain. Our approach formulates the task of angular super-resolution as a patch-wise regression using a 3D autoencoder conditioned on target b-vectors. Within the network we use a convolutional long short term memory (ConvLSTM) cell to model the relationsh…
In cardiac magnetic resonance imaging, fully-automatic segmentation of the heart enables precise structural and functional measurements to be taken, e.g. from short-axis MR images of the left-ventricle. In this work we propose a recurrent fully-convolutional network (RFCN) that learns image representations from the full stack of 2D slices and has the ability to leverage inter-slice spatial dependences through internal memory units. RFCN combines anatomical detection and segmentation into a single architecture that is trained end-to-end thus significantly reducing computational time, simplifyin…
