Apostolos Thoma has pointed out to us that the condition of Theorem 3.2 is not sufficient for the normality of the edge subring. Algebra Colloquium, to appear
Let I be the toric ideal of a homogeneous normal configuration. We prove that I is generated by circuits if and only if each unbalanced circuit of I has a "connector" which is a linear combination of circuits with a square-free term. In particular if each circuit of I with non-square-free terms is balanced, then I is generated by circuits. As a consequence we prove that the toric ideal of a normal edge subring of a multigraph is generated by circuits with a square-free term.
A homogeneous ideal is robust if its universal Gröbner basis is also a minimal generating set. For toric ideals, one has the stronger definition: A toric ideal is strongly robust if its Graver basis equals the set of indispensable binomials. We characterize the codimension 2 strongly robust toric ideals by their Gale diagrams. This gives a positive answer to a question of Petrovic, Thoma, and Vladoiu in the case of codimension 2 toric ideals.
Let $I_G$ be the toric ideal of a graph $G$. We characterize in graph theoretical terms the primitive, the minimal, the indispensable and the fundamental binomials of the toric ideal $I_G$.
In 1980, White conjectured that the toric ideal of a matroid is generated by quadratic binomials corresponding to a symmetric exchange. In this paper, we compute Gröbner bases of toric ideals associated with matroids and show that, for every matroid on ground sets of size at most seven except for two matroids, Gröbner bases of toric ideals consist of quadratic binomials corresponding to a symmetric exchange.
Relying on the combinatorial classification of toric ideals using their bouquet structure, we focus on toric ideals of hypergraphs and study how they relate to general toric ideals. We show that hypergraphs exhibit a surprisingly general behavior: the toric ideal associated to any general matrix can be encoded by that of a $0/1$ matrix, while preserving the essential combinatorics of the original ideal. We provide two universality results about the unboundedness of degrees of various generating sets: minimal, Graver, universal Gröbner bases, and indispensable binomials. Finally, we provide a p…
We prove that for any toric ideal of a graph the degree of any element of Graver basis is bounded above by an exponential function of the maximal degree of a circuit.
Let $I \subseteq R = \mathbb{K}[x_1,\ldots,x_n]$ be a toric ideal, i.e., a binomial prime ideal. We investigate when the ideal $I$ can be "split" into the sum of two smaller toric ideals. For a general toric ideal $I$, we give a sufficient condition for this splitting in terms of the integer matrix that defines $I$. When $I = I_G$ is the toric ideal of a finite simple graph $G$, we give additional splittings of $I_G$ related to subgraphs of $G$. When there exists a splitting $I = I_1+I_2$ of the toric ideal, we show that in some cases we can describe the (multi-)graded Betti numbers of $I$ in …
We extend the sortability concept to monomial ideals which are not necessarily generated in one degree and as an application we obtain normal Cohen-Macaulay toric rings attached to vertex cover ideals of graphs. Moreover, we consider a construction on a graph called a clique multi-whiskering which always produces vertex cover ideals with componentwise linear powers.
In the present paper, we prove that the toric ideals of certain $s$-block diagonal matching fields have quadratic Gröbner bases. Thus, in particular, those are quadratically generated. By using this result, we provide a new family of toric degenerations of Grassmannians.
We show that the toric ideal of a lattice path polymatroid is generated by quadrics corresponding to symmetric exchanges, and give a monomial order under which these quadrics form a Gröbner basis. We then obtain an analogous result for lattice path matroids.
A toric ideal is called robust if its universal Gröbner basis is a minimal set of generators, and is called generalized robust if its universal Gröbner basis equals its universal Markov basis (the union of all its minimal sets of binomial generators). Robust and generalized robust toric ideals are both interesting from both a Commutative Algebra and an Algebraic Statistics perspective. However, only a few nontrivial examples of such ideals are known. In this work we study these properties for toric ideals of both graphs and numerical semigroups. For toric ideals of graphs, we characterize comb…
We study the family of graphs whose number of primitive cycles equals its cycle rank. It is shown that this family is precisely the family of ring graphs. Then we study the complete intersection property of toric ideals of bipartite graphs and oriented graphs. An interesting application is that complete intersection toric ideals of bipartite graphs correspond to ring graphs and that these ideals are minimally generated by Groebner bases. We prove that any graph can be oriented such that its toric ideal is a complete intersection with a universal Groebner basis determined by the cycles. It turn…
In 1980, White conjectured that the toric ideal associated to a matroid is generated by binomials corresponding to a symmetric exchange. In this paper, we prove that classes of matroids for which the toric ideal is generated by quadrics and that has quadratic Gröbner bases, are closed under series and parallel extensions, series and parallel connections, and 2-sums.
In this paper, we discuss the normality of the toric rings of stable set polytopes, and the set of generators and Gröbner bases of toric ideals of stable set polytopes by using the results on that of edge polytopes of finite nonsimple graphs. In particular, for a graph of stability number two, we give a graph theoretical characterization of the set of generators of the toric ideal of the stable set polytope, and a criterion to check whether the toric ring of the stable set polytope is normal or not. One of the application of the results is an infinite family of stable set polytopes whose toric…
To any toric ideal $I_A$, encoded by an integer matrix $A$, we associate a matroid structure called {\em the bouquet graph} of $A$ and introduce another toric ideal called {\em the bouquet ideal} of $A$. We show how these objects capture the essential combinatorial and algebraic information about $I_A$. Passing from the toric ideal to its bouquet ideal reveals a structure that allows us to classify several cases. For example, on the one end of the spectrum, there are ideals that we call {\em stable}, for which bouquets capture the complexity of various generating sets as well as the minimal fr…
We compute the graded Betti numbers for the toric ideal of a family of graphs constructed by adjoining a cycle to a complete bipartite graph. The key observation is that this family admits an initial ideal which has linear quotients. As a corollary, we compute the Hilbert series and $h$-vector for all the toric ideals of graphs in this family.
Let $X_{P}$ be the projective toric surface associated to a lattice polytope $P$. If the number of lattice points lying on the boundary of $P$ is at least $4$, it is known that $X_{P}$ is embeddable into a suitable projective space as zero set of finitely many quadrics. In this case, the determination of a minimal generating system of the toric ideal defining $X_{P}$ is reduced to a simple Gaussian elimination.
Let $A=\{{\bf a}_1,...,{\bf a}_m\} \subset \mathbb{Z}^n$ be a vector configuration and $I_A \subset K[x_1,...,x_m]$ its corresponding toric ideal. The paper consists of two parts. In the first part we completely determine the number of different minimal systems of binomial generators of $I_A$. We also prove that generic toric ideals are generated by indispensable binomials. In the second part we associate to $A$ a simplicial complex $Δ_{\ind(A)}$. We show that the vertices of $Δ_{\ind(A)}$ correspond to the indispensable monomials of the toric ideal $I_A$, while one dimensional facets of $Δ_{\…
Otto von Guericke University Magdeburg（奥托·冯·格里克马格德堡大学）；Iowa State University（爱荷华州立大学）；Dalhousie University（达尔豪斯大学）；MPI für Mathematik in den Naturwissenschaften（德国马普自然科学数学研究所）
In this paper we study monomial ideals attached to posets, introduce generalized Hibi rings and investigate their algebraic and homological properties. The main tools to study these objects are Groebner basis theory, the concept of sortability due to Sturmfels and the theory of weakly polymatroidal ideals.
In this paper, we study toric ideals generated by circuits. For toric ideals which have squarefree quadratic initial ideals, a sufficient condition to be generated by circuits is given. In particular, squarefree Veronese subrings, the second Veronese subrings and configurations arising from root systems satisfy the condition. In addition, we study toric ideals of finite graphs and characterize the graphs whose toric ideals are generated by circuits u -v such that either u or v is squarefree. There exists several classes of graphs whose toric ideals satisfy this condition and whose toric rings …
A graph-theoretic method, simpler than existing ones, is used to characterize the minimal set of monomial generators for the integral closure of any algebra of polynomials generated by quadratic monomials. The toric ideal of relations between these generators is generated by a set of binomials, defined graphically. The spectra of the original algebra and of its integral closure turn out to be canonically homeomorphic.
In this article we prove that every toric ideal associated with a gap-free graph $G$ has a squarefree lexicographic initial ideal. Moreover, in the particular case when the complementary graph of $G$ is chordal (i.e. when the edge ideal of $G$ has a linear resolution), we show that there exists a reduced Gröbner basis $\mathcal{G}$ of the toric ideal of $G$ such that all the monomials in the support of $\mathcal{G}$ are squarefree. Finally, we show (using work by Herzog and Hibi) that if $I$ is a monomial ideal generated in degree 2, then $I$ has a linear resolution if and only if all powers o…
Associated to any hypergraph is a toric ideal encoding the algebraic relations among its edges. We study these ideals and the combinatorics of their minimal generators, and derive general degree bounds for both uniform and non-uniform hypergraphs in terms of balanced hypergraph bicolorings, separators, and splitting sets. In turn, this provides complexity bounds for algebraic statistical models associated to hypergraphs. As two main applications, we recover a well-known complexity result for Markov bases of arbitrary 3-way tables, and we show that the defining ideal of the tangential variety i…
Let $G$ be a simple graph on the vertex set $\{1,\ldots,n\}$ with $m$ edges. An algebraic object attached to $G$ is the ideal $P_{G}$ generated by diagonal 2-minors of an $n \times n$ matrix of variables. In this paper we prove that if $G$ is bipartite, then every initial ideal of $P_{G}$ is generated by squarefree monomials of degree at most $\left \lfloor{\frac{m+n+1}{2}} \right \rfloor$. Furthermore, we completely characterize all connected graphs $G$ for which $P_{G}$ is the toric ideal associated to a finite simple graph. Finally we compute in certain cases the universal Gr{ö}bner basis o…
A referee found an error in the proof of the Main Theorem ("toric ideals of flow polytopes are generated in degree 3") that we could not fix. More precisely, the proof of Lemma 4.2.(ii) is incorrect. The results on Gröbner bases are untouched by this. ----- We show that toric ideals of flow polytopes are generated in degree 3. This was conjectured by Diaconis and Eriksson for the special case of the Birkhoff polytope. Our proof uses a hyperplane subdivision method developed by Haase and Paffenholz. It is known that reduced revlex Gröbner bases of the toric ideal of the Birkhoff polytope $B_n$ …
We consider the phylogenetic tree model in which every node of the tree is observed and binary and the transitions are given by the same matrix on each edge of the tree. We are able to compute the Grobner basis and Markov basis of the toric ideal of invariants for trees with up to 11 nodes. These are perhaps the first non-trivial Grobner bases calculations in 2^11 indeterminates. We conjecture that there is a quadratic Grobner basis for binary trees. Finally, we give a explicit description of the polytope associated to this toric ideal for an infinite family of binary trees and conjecture that…
We characterize the graphs $G$ for which their toric ideals $I_G$ are complete intersections. In particular we prove that for a connected graph $G$ such that $I_G$ is complete intersection all of its blocks are bipartite except of at most two. We prove that toric ideals of graphs which are complete intersections are circuit ideals. The generators of the toric ideal correspond to even cycles of $G$ except of at most one generator, which corresponds to two edge disjoint odd cycles joint at a vertex or with a path. We prove that the blocks of the graph satisfy the odd cycle condition. Finally we …
A central question in liaison theory asks whether every Cohen-Macaulay, graded ideal of a standard graded K-algebra belongs to the same G-liaison class of a complete intersection. In this paper we answer this question positively for toric ideals defining edge subrings of bipartite graphs.
To every toric ideal one can associate an oriented matroid structure, consisting of a graph and another toric ideal, called bouquet ideal. The connected components of this graph are called bouquets. Bouquets are of three types; free, mixed and non mixed. We prove that the cardinality of the following sets - the set of indispensable elements, minimal Markov bases, the Universal Markov basis and the Universal Gröbner basis of a toric ideal - depends only on the type of the bouquets and the bouquet ideal. These results enable us to introduce the strongly robustness simplicial complex and show tha…
Associated to any graph is a toric ideal whose generators record relations among the cuts of the graph. We study these ideals and the geometry of the corresponding toric varieties. Our theorems and conjectures relate the combinatorial structure of the graph and the corresponding cut polytope to algebraic properties of the ideal. Cut ideals generalize toric ideals arising in phylogenetics and the study of contingency tables.
In this paper, we discuss the toric ideals of Minkowski sums of unit simplices. More precisely, we prove that the toric ideal of Minkowski sum of unit simplices has a squarefree initial ideal and is generated by quadratic binomials. Moreover, we also prove that Minkowski sums of unit simplices have the integer decomposition property. Those results are a partial contribution to Oda conjecture and Bøgvad conjecture.
A normal (respectively, graded normal) vector configuration $A$ defines the toric ideal $I_A$ of a normal (respectively, projectively normal) toric variety. These ideals are Cohen-Macaulay, and when $A$ is normal and graded, $I_A$ is generated in degree at most the dimension of $I_A$. Based on this, Sturmfels asked if these properties extend to initial ideals -- when $A$ is normal, is there an initial ideal of $I_A$ that is Cohen-Macaulay, and when $A$ is normal and graded, does $I_A$ have a Gröbner basis generated in degree at most $dim(I_A)$ ? In this paper, we answer both questions positive…
Describing minimal generating set of a toric ideal is a well-studied and difficult problem. In 1980 White conjectured that the toric ideal associated to a matroid is equal to the ideal generated by quadratic binomials corresponding to symmetric exchanges. We prove White's conjecture up to saturation, that is that the saturations of both ideals are equal. In the language of algebraic geometry this means that both ideals define the same projective scheme. Additionally we prove the full conjecture for strongly base orderable matroids.
We call an ideal in a polynomial ring robust if it can be minimally generated by a universal Gröbner basis. In this paper we show that robust toric ideals generated by quadrics are essentially determinantal. We then discuss two possible generalizations to higher degree, providing a tight classification for determinantal ideals, and a counterexample to a natural extension for Lawrence ideals. We close with a discussion of robustness of higher Betti numbers.
Our purpose is to study the family of simple undirected graphs whose toric ideal is a complete intersection from both an algorithmic and a combinatorial point of view. We obtain a polynomial time algorithm that, given a graph $G$, checks whether its toric ideal $P_G$ is a complete intersection or not. Whenever $P_G$ is a complete intersection, the algorithm also returns a minimal set of generators of $P_G$. Moreover, we prove that if $G$ is a connected graph and $P_G$ is a complete intersection, then there exist two induced subgraphs $R$ and $C$ of $G$ such that the vertex set $V(G)$ of $G$ is…
Richardson varieties are obtained as intersections of Schubert and opposite Schubert varieties. We provide a new family of toric degenerations of Richardson varieties inside Grassmannians by studying Gröbner degenerations of their corresponding ideals. These degenerations are parametrised by block diagonal matching fields in the sense of Sturmfels-Zelevinsky. We associate a weight vector to each block diagonal matching field and study its corresponding initial ideal. In particular, we characterise when such ideals are toric, hence providing a family of toric degenerations for Richardson variet…
In this paper, we investigate three problems concerning the toric ideal associated to a matroid. Firstly, we list all matroids $\mathcal M$ such that its corresponding toric ideal $I_{\mathcal M}$ is a complete intersection. Secondly, we handle with the problem of detecting minors of a matroid $\mathcal M$ from a minimal set of binomial generators of $I_{\mathcal M}$. In particular, given a minimal set of binomial generators of $I_{\mathcal M}$ we provide a necessary condition for $\mathcal M$ to have a minor isomorphic to $\mathcal U_{d,2d}$ for $d \geq 2$. This condition is proved to be suff…
In $1980$ White conjectured that every element of the toric ideal of a matroid is generated by quadratic binomials corresponding to symmetric exchanges. We prove White's conjecture for high degrees with respect to the rank. This extends our result arXiv:1302.5236 confirming White's conjecture `up to saturation'. Furthermore, we study degrees of Gröbner bases and Betti tables of the toric ideals of matroids of a fixed rank.
Let G be a finite simple graph. In this paper we will show that the binomial edge ideal of G, JG is toric if and only if each connected component of G is complete and in this case it is the sum of toric ideal associated to bipartite complete graphs.
The toric ring together with the toric ideal arising from a nested configuration is studied, with particular attention given to the algebraic study of normality of the toric ring as well as the Gröbner bases of the toric ideal. One of the combinatorial applications of these algebraic findings leads to insights on smooth $3 \times 3$ transportation polytopes.
We present families of tableaux which interpolate between the classical semi-standard Young tableaux and matching field tableaux. Algebraically, this corresponds to SAGBI bases of Plücker algebras. We show that each such family of tableaux leads to a toric ideal, that can be realized as initial of the Plücker ideal, hence a toric degeneration for the flag variety.
Each partition $λ= (λ_1, λ_2, ..., λ_n)$ determines a so-called Ferrers tableau or, equivalently, a Ferrers bipartite graph. Its edge ideal, dubbed Ferrers ideal, is a squarefree monomial ideal that is generated by quadrics. We show that such an ideal has a 2-linear minimal free resolution, i.e. it defines a small subscheme. In fact, we prove that this property characterizes Ferrers graphs among bipartite graphs. Furthermore, using a method of Bayer and Sturmfels, we provide an explicit description of the maps in its minimal free resolution: This is obtained by associating a suitable polyhedra…
Given two toric ideals $I_1,I_2\subset\si$, it is not always true that $I_1+I_2$ is a toric ideal. Given $I_1,...,I_k\subset\si$ a familly of toric ideals we give necessary conditions in order to have that $I_1+...+I_k$ is a toric ideal.
Let $M$ and $N$ be two monomials of the same degree, and let $I$ be the smallest Borel ideal containing $M$ and $N$. We show that the toric ring of $I$ is Koszul by constructing a quadratic Gröbner basis for the associated toric ideal. Our proofs use the construction of graphs corresponding to fibers of the toric map. As a consequence, we conclude that the Rees algebra is also Koszul.
The slack ideal of a polytope is a saturated determinantal ideal that gives rise to a new model for the realization space of the polytope. The simplest slack ideals are toric and have connections to projectively unique polytopes. We prove that if a projectively unique polytope has a toric slack ideal, then it is the toric ideal of the bipartite graph of vertex-facet non-incidences of the polytope. The slack ideal of a polytope is contained in this toric ideal if and only if the polytope is morally 2-level, a generalization of the 2-level property in polytopes. We show that polytopes that do no…
Bounds for the maximal degree of certain Gröbner bases of simplicial toric ideals are given. These bounds are close to the bound stated in Eisenbud-Goto's Conjecture on the Castelnuovo-Mumford regularity.
Let $G$ be a finite simple graph. We give a lower bound for the Castelnuovo-Mumford regularity of the toric ideal $I_G$ associated to $G$ in terms of the sizes and number of induced complete bipartite graphs in $G$. When $G$ is a chordal bipartite graph, we find an upper bound for the regularity of $I_G$ in terms of the size of the bipartition of $G$. We also give a new proof for the graded Betti numbers of the toric ideal associated to the complete bipartite graph $K_{2,n}$.
