We introduce a monoid structure on the set of binary search trees, by a process very similar to the construction of the plactic monoid, the Robinson-Schensted insertion being replaced by the binary search tree insertion. This leads to a new construction of the algebra of Planar Binary Trees of Loday-Ronco, defining it in the same way as Non-Commutative Symmetric Functions and Free Symmetric Functions. We briefly explain how the main known properties of the Loday-Ronco algebra can be described and proved with this combinatorial point of view, and then discuss it from a representation theoretical point of view, which in turns leads to new combinatorial properties of binary trees.
In this short note, we first present a simple bijection between binary trees and colored ternary trees and then derive a new identity related to generalized Catalan numbers.
In this paper we consider the enumeration of binary trees avoiding non-contiguous binary tree patterns. We begin by computing closed formulas for the number of trees avoiding a single binary tree pattern with 4 or fewer leaves and compare these results to analogous work for contiguous tree patterns. Next, we give an explicit generating function that counts binary trees avoiding a single non-contiguous tree pattern according to number of leaves. In addition, we enumerate binary trees that simultaneously avoid more than one tree pattern. Finally, we explore connections between pattern-avoiding t…
Let $Ω_n$ be the family of binary trees on $n$ vertices obtained by identifying the root of an rgood binary tree with a vertex of maximum eccentricity of a binary caterpillar. In the paper titled "On different middle parts of a tree (The electronic journal of combinatorics, 25 (2018), no. 3, paper 3.17, 32 pp)", Smith et al. conjectured that among all binary trees on $n$ vertices the pairwise distance between any two of center, centroid and subtree core is maximized by some member of the family $Ω_n$. We first obtain the rooted binary tree which minimizes the number of root containing subtrees…
In this paper, we present a new method for determining the optimal pebbling number of a complete binary tree. This method reveals a curious connection between the optimal pebbling numbers of complete binary trees and the Conolly-Fox sequence, a type of meta-Fibonacci sequence.
We introduce a monoid structure on a certain set of labelled binary trees, by a process similar to the construction of the plactic monoid. This leads to a new interpretation of the algebra of planar binary trees of Loday-Ronco.
Hex-trees are identified as a particular instance of weighted unary-binary trees. The Horton-Strahler numbers of these objects are revisited, and, thanks to a substitution that is not immediately intuitive, explicit results are possible. They are augmented by asymptotic evaluations as well. Furthermore, marked ordered trees (in bijection to skew Dyck paths) are investigated, followed 3-Motzkin paths and multi-edge trees. The underlying theme is sequence A002212 in the Encyclopedia of integer sequences.
We show that the set of balanced binary trees is closed by interval in the Tamari lattice. We establish that the intervals [T, T'] where T and T' are balanced binary trees are isomorphic as posets to a hypercube. We introduce synchronous grammars that allow to generate tree-like structures and obtain fixed-point functional equations to enumerate these. We also introduce imbalance tree patterns and show that they can be used to describe some sets of balanced binary trees that play a particular role in the Tamari lattice. Finally, we investigate other families of binary trees that are also close…
We develop combinatorial methods for computing the rotation distance between binary trees, i.e., equivalently, the flip distance between triangulations of a polygon. As an application, we prove that, for each n, there exist size n trees at distance 2n - O(sqrt(n)).
The theme of this article is the algebraic combinatorics of leaf-labeled rooted binary trees and forests of such trees. The structure of a Hopf operad is defined on the vector spaces spanned by forests of leaf-labeled, rooted, binary trees. An explicit formula for the coproduct and its dual product is given, using a poset on forests.
We show that the set of balanced binary trees is closed by interval in the Tamari lattice. We establish that the intervals [T0, T1] where T0 and T1 are balanced trees are isomorphic as posets to a hypercube. We introduce tree patterns and synchronous grammars to get a functional equation of the generating series enumerating balanced tree intervals.
Some posets of binary leaf-labeled trees are shown to be supersolvable lattices and explicit EL-labelings are given. Their characteristic polynomials are computed, recovering their known factorization in a different way.
We discover another one-parameter generalization of Postnikov's hook length formula for binary trees. The particularity of our formula is that the hook length $h_v$ appears as an exponent. As an application, we derive another simple hook length formula for binary trees when the underlying parameter takes the value 1/2.
In analogy to other concepts of a similar nature, we define the inducibility of a rooted binary tree. Given a fixed rooted binary tree $B$ with $k$ leaves, we let $γ(B,T)$ be the proportion of all subsets of $k$ leaves in $T$ that induce a tree isomorphic to $B$. The inducibility of $B$ is $\limsup_{|T| \to \infty} γ(B,T)$. We determine the inducibility in some special cases, show that every binary tree has positive inducibility and prove that caterpillars are the only binary trees with inducibility $1$. We also formulate some open problems and conjectures on the inducibility. Finally, we pres…
This paper considers the enumeration of trees avoiding a contiguous pattern. We provide an algorithm for computing the generating function that counts n-leaf binary trees avoiding a given binary tree pattern t. Equipped with this counting mechanism, we study the analogue of Wilf equivalence in which two tree patterns are equivalent if the respective n-leaf trees that avoid them are equinumerous. We investigate the equivalence classes combinatorially. Toward establishing bijective proofs of tree pattern equivalence, we develop a general method of restructuring trees that conjecturally succeeds …
It is proved that the average number of segments on the right branch of a binary tree of size n tends to 3 as n tends to $\infty$. Also the fraction of trees with k segments on the right branch from all trees of size n tends to $\frac{k}{2^{k+1}}$ as n tends to $\infty$
A classical problem in phylogenetic tree analysis is to decide whether there is a phylogenetic tree $T$ that contains all information of a given collection $\cP$ of phylogenetic trees. If the answer is "yes" we say that $\cP$ is compatible and $T$ displays $\cP$. This decision problem is NP-complete even if all input trees are quartets, that is binary trees with exactly four leaves. In this paper, we prove a sufficient condition for a set of binary phylogenetic trees to be compatible. That result is used to give a short and self-contained proof of the known characterization of quartet sets of …
We take a global view at substitution invariant Sturmian sequences. We show that homogeneous substitution invariant Sturmian sequences $s_{α,α}$ can be indexed by two binary trees, associated directly to Johannes Kepler's tree of harmonic fractions from 1619. We obtain similar results for the inhomogeneous sequences $s_{α,1-α}$ and $s_{α,0}$.
We show that for every $k$, the probability that a randomly selected vertex of a random binary search tree on $n$ nodes is at distance $k-1$ from the closest leaf converges to a rational constant $c_k$ as $n$ goes to infinity.
An earlier characterization of topologically ordered (lexicographic) path-length sequences of binary trees is reformulated in terms of an integrality condition on a scaled Kraft sum of certain subsequences (full segments, or islands). The scaled Kraft sum is seen to count the set of ancestors at a certain level of a set of topologically consecutive leaves is a binary tree.
The existence of greatest lower bounds in the imbalance order of path-length sequences of binary trees is seen to be a consequence of a joint monotonicity property of the greater and lower expension operations. Path length sequences that are join-irreducible in the imbalance lattice are characterized.
We study the set of NBC sets (no broken circuit sets) of the Linial arrangement and deduce a constructive bijection to the set of local binary search trees. We then generalize this construction to two families of Linial type arrangements for which the bijections are with some $k$-ary labelled trees that we introduce for this purpose.
This note provide bijective proofs of two combinatorial identities involving generalized Catalan number $C_{m,5}(n)={m\over 5n+m}{5n+m\choose n}$ recently proposed by Sun.
Binary rooted trees, both in the ordered and in the un-ordered case, are well studied structures in the field of combinatorics. The aim of this work is to study particular patterns in these classes of trees. We consider completely unbalanced subtrees, where unbalancing is measured according to the so-called Colless's index. The size of the biggest unbalanced subtree becomes then a new parameter with respect to which we find several enumerations.
A reformulation of the path length of binary search trees is given in terms of permutations, allowing to extend the definition to the instance of words, where the letters are obtained by independent geometric random variables (with parameter q). In this way, expressions for expectation and variance are obtained which in the limit for $q\to1$ are the classical expressions.
One wishes to remove $k-1$ edges of a vertex-weighted tree $T$ such that the weights of the $k$ induced connected components are approximately the same. How well can one do it ? In this paper, we investigate such $k$-separator for {\em quasi-binary} trees. We show that, under certain conditions on the total weight of the tree, a particular $k$-separator can be constructed such that the smallest (respectively the largest) weighted component is lower (respectively upper) bounded. Examples showing optimality for the lower bound are also given.
The register function (or Horton-Strahler number) of a binary tree is a well-known combinatorial parameter. We study a reduction procedure for binary trees which offers a new interpretation for the register function as the maximal number of reductions that can be applied to a given tree. In particular, the precise asymptotic behavior of the number of certain substructures ("branches") that occur when reducing a tree repeatedly is determined. In the same manner we introduce a reduction for simple two-dimensional lattice paths from which a complexity measure similar to the register function can …
We look at a family of meta-Fibonacci sequences which arise in studying the number of leaves at the largest level in certain infinite sequences of binary trees, restricted compositions of an integer, and binary compact codes. For this family of meta-Fibonacci sequences and two families of related sequences we derive ordinary generating functions and recurrence relations. Included in these families of sequences are several well-known sequences in the Online Encyclopedia of Integer Sequences (OEIS).
Fomin (1994) introduced a notion of duality between two graded graphs on the same set of vertices. He also introduced a generalization to dual graded graphs of the classical Robinson-Schensted-Knuth algorithm. We show how Fomin's approach applies to the binary search tree insertion algorithm also known as sylvester insertion, and to the hypoplactic insertion algorithm.
The register function (or Horton-Strahler number) of a binary tree is a well-known combinatorial parameter. We study a reduction procedure for binary trees which offers a new interpretation for the register function as the maximal number of reductions that can be applied to a given tree. In particular, the precise asymptotic behavior of the number of certain substructures ("branches") that occur when reducing a tree repeatedly is determined. In the same manner we introduce a reduction for simple two-dimensional lattice paths from which a complexity measure similar to the register function can …
We here both unify and generalize nonassociative structures on typed binary trees, that is to say plane binary trees which edges are decorated by elements of a set $Ω$. We prove that we obtain such a structure, called an $Ω$-dendriform structure, if $Ω$ has four products satisfying certain axioms (EDS axioms), including the axioms of a diassociative semigroup. This includes matching dendriform algebras introduced by Zhang, Gao and Guo and family dendriform algebras associated to a semigroup introduced by Zhang, Gao and Manchon , and of course dendriform algebras when $Ω$ is reduced to a single…
There is a unique path from the root of a tree to any other vertex. Every vertex, except the root, has a parent: the adjoining vertex on this unique path. This is the conventional definition of the parent vertex. For complete binary trees, however, we show that it is useful to define another parent vertex, called a \emph{distant parent}. The study of distant parents leads to novel connections with dyadic rational numbers. Moreover, we apply the concepts of close and distant parent vertices to deduce an apparently new sense in which continued fractions are `best' rational approximations.
A function on an algebra is congruence preserving if, for any congruence, it maps pairs of congruent elements onto pairs of congruent elements. We show that on the algebra of complete binary trees whose leaves are labeled by letters of an alphabet containing at least three letters a function is congruence preserving if and only if it is polynomial. This exhibits an example of a non commutative and non associative affine complete algebra. As far as we know, it is the first example of such an algebra.
We give a new construction of a Hopf algebra defined first by Reading whose bases are indexed by objects belonging to the Baxter combinatorial family (i.e., Baxter permutations, pairs of twin binary trees, etc.). Our construction relies on the definition of the Baxter monoid, analog of the plactic monoid and the sylvester monoid, and on a Robinson-Schensted-like correspondence and insertion algorithm. Indeed, the Baxter monoid leads to the definition of a lattice structure over pairs of twin binary trees and the definition of a Hopf algebra. The algebraic properties of this Hopf algebra are st…
Rooted triples, rooted binary phylogenetic trees on three leaves, are sufficient to encode rooted binary phylogenetic trees. That is, if $\mathcal T$ and $\mathcal T'$ are rooted binary phylogenetic $X$-trees that infers the same set of rooted triples, then $\mathcal T$ and $\mathcal T'$ are isomorphic. However, in general, this sufficiency does not extend to rooted binary phylogenetic networks. In this paper, we show that trinets, phylogenetic network analogues of rooted triples, are sufficient to encode rooted binary orchard networks. Rooted binary orchard networks naturally generalise roote…
We present a new uniform random sampler for binary trees with $n$ internal nodes consuming $2n + Θ(\log(n)^2)$ random bits on average. This makes it quasi-optimal and out-performs the classical Remy algorithm. We also present a sampler for unary-binary trees with $n$ nodes taking $Θ(n)$ random bits on average. Both are the first linear-time algorithms to be optimal up to a constant.
A tree-based network $N$ on $X$ is called universal if every phylogenetic tree on $X$ is a base tree for $N$. Recently, binary universal tree-based networks have attracted great attention in the literature and their existence has been analyzed in various studies. In this note, we extend the analysis to non-binary networks and show that there exist both a rooted and an unrooted non-binary universal tree-based network with $n$ leaves for all positive integers $n$.
We identify the mean growth of the independence number of random binary search trees and random recursive trees and show normal fluctuations around their means. Similarly we also show normal limit laws for the domination number and variations of it for these two cases of random tree models. Our results are an application of a recent general theorem of Holmgren and Janson on fringe trees in these two random tree models.
In this paper we examine planted binary plane trees. First, we provide an exact formula for the number of planted binary trees with given Horton-Strahler orders. Then, using the notion of entropy, we examine the structural complexity of random planted binary trees with N vertices. Finally, we quantify the complexity of the tree's structural properties as tree grows in size, by evaluating the entropy rate for planted binary plane trees with N vertices and for planted binary plane trees that satisfy Horton Law with Horton exponent R.
In "Hopf algebra of the planar binary trees", Adv. Math. 139 (1998), no. 2, 293--309, we constructed by induction a graded associative product on the vector space generated by the planar binary trees (resp. the permutations). In the present paper we prove an explicit formula for this product in terms of a partial order on the set of planar binary trees (resp. the weak Bruhat order on the symmetric groups).
This paper describes the shortest path problem in weighted graphs and examines the differences in efficiency that occur when using Dijkstra's algorithm with a Fibonacci heap, binary heap, and self-balancing binary tree. Using C++ implementations of these algorithm variants, we find that the fastest method is not always the one that has the lowest asymptotic complexity. Reasons for this are discussed and backed with empirical evidence.
A fringe subtree of a rooted tree is a subtree consisting of one of the nodes and all its descendants. In this paper, we are specifically interested in the number of non-isomorphic trees that appear in the collection of all fringe subtrees of a binary tree. This number is analysed under two different random models: uniformly random binary trees and random binary search trees. In the case of uniformly random binary trees, we show that the number of non-isomorphic fringe subtrees lies between $c_1n/\sqrt{\ln n}(1+o(1))$ and $c_2n/\sqrt{\ln n}(1+o(1))$ for two constants $c_1 \approx 1.0591261434$…
Three standard subtree transfer operations for binary trees, used in particular for phylogenetic trees, are: tree bisection and reconnection ($TBR$), subtree prune and regraft ($SPR$) and rooted subtree prune and regraft ($rSPR$). For a pair of leaf-labelled binary trees with $n$ leaves, the maximum number of such moves required to transform one into the other is $n-Θ(\sqrt{n})$, extending a result of Ding, Grunewald and Humphries. We show that if the pair is chosen uniformly at random, then the expected number of moves required to transfer one into the other is $n-Θ(n^{2/3})$. These results m…
Phylogenetic networks are a generalization of phylogenetic trees allowing for the representation of non-treelike evolutionary events such as hybridization. Typically, such networks have been analyzed based on their `level', i.e. based on the complexity of their 2-edge-connected components. However, recently the question of how `treelike' a phylogenetic network is has become the center of attention in various studies. This led to the introduction of \emph{tree-based networks}, i.e. networks that can be constructed from a phylogenetic tree, called the \emph{base tree}, by adding additional edges…
We give a simple explanation why the stationary state of the 1D TASEP model with open boundaries is related to the Catalan numbers. Our construction is based on planar binary trees and provides a combinatorial solution of the stationary state. We discuss the relation to Catalan tableaux approaches in an appendix.
We develop a purely set-theoretic formalism for binary trees and binary graphs. We define a category of binary automata, and display it as a fibred category over the category of binary graphs. We also relate the notion of binary graphs to transition systems, which arise in the theory of concurrent computing.
This extended abstract is dedicated to the analysis of the height of non-plane unlabelled rooted binary trees. The height of such a tree chosen uniformly among those of size $n$ is proved to have a limiting theta distribution, both in a central and local sense. Moderate as well as large deviations estimates are also derived. The proofs rely on the analysis (in the complex plane) of generating functions associated with trees of bounded height.
