We study the construction of $d$-deletion-correcting binary codes by formulating the problem as a Maximum Clique Problem (MCP). In this formulation, vertices represent candidate codewords and edges connect pairs whose longest common subsequence (LCS) distance guarantees correction of up to $d$ deletions. A valid codebook corresponds to a clique in the resulting graph, and finding the largest codebook is equivalent to identifying a maximum clique. While MCP-based formulations for deletion-correcting codes have previously been explored, we demonstrate that applying Penalty-Guided Clique Search (PGCS), a lightweight stochastic clique-search heuristic inspired by Dynamic Local Search (DLS), consistently yields larger codebooks than existing graph-based heuristics, including minimum-degree and coloring methods, for block lengths $n = 8,9,\dots,14$ and deletion parameters $d = 1,2,3$. In several finite-length regimes, the resulting codebooks match known optimal sizes and outperform classical constructions such as Helberg codes. For decoding under segmented reception, where codeword boundaries are known, we propose an optimized LCS-based decoder that exploits symbol-count filtering and early termination to substantially reduce the number of LCS evaluations while preserving exact decoding guarantees. These optimizations lead to significantly lower average-case decoding complexity than the baseline $O(|C| n^2)$ approach.
We first give a construction of binary $t_1$-deletion-$t_2$-insertion-burst correcting codes with redundancy at most $\log(n)+(t_1-t_2-1)\log\log(n)+O(1)$, where $t_1\ge 2t_2$. Then we give an improved construction of binary codes capable of correcting a burst of $4$ non-consecutive deletions, whose redundancy is reduced from $7\log(n)+2\log\log(n)+O(1)$ to $4\log(n)+6\log\log(n)+O(1)$. Lastly, by connecting non-binary $b$-burst-deletion correcting codes with binary $2b$-deletion-$b$-insertion-burst correcting codes, we give a new construction of non-binary $b$-burst-deletion correcting codes …
In this paper, we construct systematic $q$-ary two-deletion correcting codes and burst-deletion correcting codes, where $q\geq 2$ is an even integer. For two-deletion codes, our construction has redundancy $5\log n+O(\log q\log\log n)$ and has encoding complexity near-linear in $n$, where $n$ is the length of the message sequences. For burst-deletion codes, we first present a construction of binary codes with redundancy $\log n+9\log\log n+γ_t+o(\log\log n)$ bits $(γ_t$ is a constant that depends only on $t)$ and capable of correcting a burst of at most $t$ deletions, which improves the Lenz-P…
A Decoding Algorithm for Composite Errors Consisting of Deletions and Insertions in Quantum Deletion-Correcting Codes Based on Quantum Reed-Solomon Codes
This paper investigates the problem of correcting multiple criss-cross insertions and deletions in arrays. More precisely, we study the unique recovery of $n \times n$ arrays affected by $t$-criss-cross deletions defined as any combination of $t_r$ row and $t_c$ column deletions such that $t_r + t_c = t$ for a given $t$. We show an equivalence between correcting $t$-criss-cross deletions and $t$-criss-cross insertions and show that a code correcting $t$-criss-cross insertions/deletions has redundancy at least $tn + t \log n - \log(t!)$. Then, we present an existential construction of $t$-criss…
Maximum run-length limited codes are constraint codes used in communication and data storage systems. Insertion/deletion correcting codes correct insertion or deletion errors caused in transmitted sequences and are used for combating synchronization errors. This paper investigates the maximum run-length limited single insertion/deletion correcting (RLL-SIDC) codes. More precisely, we construct efficiently encodable and decodable RLL-SIDC codes. Moreover, we present its encoding algorithm and show the redundancy of the code.
Recent work by Smagloy et al. (ISIT 2020) shows that the redundancy of a single-deletion $s$-substitution correcting code is asymptotically at least $(s+1)\log n+o(\log n)$, where $n$ is the length of the codes. They also provide a construction of single-deletion and single-substitution codes with redundancy $6\log n+8$. In this paper, we propose a family of systematic single-deletion $s$-substitution correcting codes of length $n$ with asymptotical redundancy at most $(3s+4)\log n+o(\log n)$ and polynomial encoding/decoding complexity, where $s\geq 2$ is a constant. Specifically, the encoding…
We consider the problem of correcting insertion and deletion errors in the $d$-dimensional space. This problem is well understood for vectors (one-dimensional space) and was recently studied for arrays (two-dimensional space). For vectors and arrays, the problem is motivated by several practical applications such as DNA-based storage and racetrack memories. From a theoretical perspective, it is interesting to know whether the same properties of insertion/deletion correcting codes generalize to the $d$-dimensional space. In this work, we show that the equivalence between insertion and deletion …
The problem of correcting deletions has received significant attention, partly because of the prevalence of these errors in DNA data storage. In this paper, we study the problem of correcting a consecutive burst of at most $t$ deletions in non-binary sequences. We first propose a non-binary code correcting a burst of at most 2 deletions for $q$-ary alphabets. Afterwards, we extend this result to the case where the length of the burst can be at most $t$ where $t$ is a constant. Finally, we consider the setup where the sequences that are transmitted are permutations. The proposed codes are the l…
This paper studies the problem of constructing codes correcting deletions in arrays. Under this model, it is assumed that an $n\times n$ array can experience deletions of rows and columns. These deletion errors are referred to as $(t_r,t_c)$-criss-cross deletions if $t_r$ rows and $t_c$ columns are deleted, while a code correcting these deletion patterns is called a $(t_r,t_c)$-criss-cross deletion correction code. The definitions for criss-cross insertions are similar. It is first shown that when $t_r=t_c$ the problems of correcting criss-cross deletions and criss-cross insertions are equival…
Permutation codes and multi-permutation codes have been widely considered due to their various applications, especially in flash memory. In this paper, we consider permutation codes and multi-permutation codes against a burst of stable deletions. In particular, we propose a construction of permutation codes correcting a burst stable deletion of length $s$, with redundancy $\log n+ 2\log \log n+O(1)$. Compared to the previous known results, our improvement relies on a different strategy to retrieve the missing symbol on the first row of the array representation of a permutation. We also general…
Codes for correcting sticky insertions/deletions and limited-magnitude errors have attracted significant attention due to their applications of flash memories, racetrack memories, and DNA data storage systems. In this paper, we first consider the error type of $t$-sticky deletions with $\ell$-limited-magnitude and propose a non-systematic code for correcting this type of error with redundancy $2t(1-1/p)\cdot\log(n+1)+O(1)$, where $p$ is the smallest prime larger than $\ell+1$. Next, we present a systematic code construction with an efficient encoding and decoding algorithm with redundancy $\fr…
We consider the problem of constructing codes that can correct deletions that are localized within a certain part of the codeword that is unknown a priori. Namely, the model that we study is when at most $k$ deletions occur in a window of size $k$, where the positions of the deletions within this window are not necessarily consecutive. Localized deletions are thus a generalization of burst deletions that occur in consecutive positions. We present novel explicit codes that are efficiently encodable and decodable and can correct up to $k$ localized deletions. Furthermore, these codes have $\log …
We consider the problem of constructing binary codes for correcting deletions that are localized within certain parts of the codeword that are unknown a priori. The model that we study is when $δ\leq w$ deletions are localized in a window of size $w$ bits. These $δ$ deletions do not necessarily occur in consecutive positions, but are restricted to the window of size $w$. The localized deletions model is a generalization of the bursty model, in which all the deleted bits are consecutive. In this paper, we construct new explicit codes for the localized model, based on the family of Guess & Check…
We propose two systematic constructions of deletion-correcting codes for protecting quantum information. The first one works with qudits of any dimension, but only one deletion is corrected and the constructed codes are asymptotically bad. The second one corrects multiple deletions and can construct asymptotically good codes. The second one also allows conversion of stabilizer-based quantum codes to deletion-correcting codes, and entanglement assistance.
Deletion-Correcting Codes for the $\ell$-Symbol Read Channel
Institute of Mathematics and Interdisciplinary Sciences, Xidian University（西安电子科技大学数学与交叉科学研究院）；School of Mathematical Sciences, Capital Normal University（首都师范大学数学科学学院）
One of the main challenges in developing racetrack memory systems is the limited precision in controlling the track shifts, that in turn affects the reliability of reading and writing the data. A current proposal for combating deletions in racetrack memories is to use redundant heads per-track resulting in multiple copies (potentially erroneous) and recovering the data by solving a specialized version of a sequence reconstruction problem. Using this approach, $k$-deletion correcting codes of length $n$, with $d \ge 2$ heads per-track, with redundancy $\log \log n + 4$ were constructed. However…
Motivated by applications in DNA-based storage and communication systems, we study deletion and insertion errors simultaneously in a burst. In particular, we study a type of error named $t$-deletion-$s$-insertion-burst ($(t,s)$-burst for short) which is a generalization of the $(2,1)$-burst error proposed by Schoeny {\it et. al}. Such an error deletes $t$ consecutive symbols and inserts an arbitrary sequence of length $s$ at the same coordinate. We provide a sphere-packing upper bound on the size of binary codes that can correct a $(t,s)$-burst error, showing that the redundancy of such codes …
Substring Edit Correcting Codes and Optimal Single Burst-Deletion Correcting Codes
Institute of Mathematics and Interdisciplinary Sciences, Xidian University（西安电子科技大学数学与 interdisciplinary 科学研究院）；School of Mathematical Sciences, Capital Normal University（首都师范大学数学科学学院）
Order-Optimal Systematic Permutation Codes for Correcting t Deletions
Beijing University of Posts and Telecommunications（北京邮电大学）；VinUniversity（文林大学）；Key Laboratory of Universal Wireless Communications, Ministry of Education, Beijing University of Posts and Telecommunications（北京邮电大学通用无线通信教育部重点实验室）；National University of Singapore（新加坡国立大学）
