Chemically active systems such as living cells are maintained out of thermal equilibrium due to chemical events which generate heat and lead to active fluctuations. A key question is to understand on which time and length scales active fluctuations dominate thermal fluctuations. Here, we formulate a stochastic field theory with Poisson white noise to describe the heat fluctuations which are generated by stochastic chemical events and lead to active temperature fluctuations. We find that on large length and time scales, active fluctuations always dominate thermal fluctuations. However, at intermediate length and time scales, multiple crossovers exist which highlight the different characteristics of active and thermal fluctuations. Our work provides a framework to characterize fluctuations in active systems and reveals that local equilibrium holds at certain length and time scales.
Max Planck Institute for Dynamics and Self-Organization（马克斯·普朗克动力学与自组织研究所）；DAMTP, Centre for Mathematical Sciences, University of Cambridge（剑桥大学数学科学中心 DAMTP）
We demonstrate that active rotations in chemically signalling particles, such as autochemotactic {\it E. coli} close to walls, create a route for pattern formation based on a nonlinear yet deterministic instability mechanism. For slow rotations, we find a transient persistence of the uniform state, followed by a sudden formation of clusters contingent on locking of the average propulsion direction by chemotaxis. These clusters coarsen, which results in phase separation into a dense and a dilute region. Faster rotations arrest phase separation leading to a global travelling wave of rotors with …
We study the dependence of the surface tension of a fluid interface on the density profile of a third suspended phase. By means of an approximated model for the binary mixture and of a perturbative approach we derive close formulas for the free energy of the system and for the surface tension of the interface. Our results show a remarkable non-monotonous dependence of the surface tension on the peak of the density of the suspended phase. Our results also predict the local value of the surface tension in the case in which the density of the suspended phase is not homogeneous along the interface…
Non-reciprocal interactions between condensates in chemically active mixtures
Max Planck Institute for Dynamics and Self-Organization（马克斯·普朗克动力学与自组织研究所）；SISSA — International School for Advanced Studies and INFN（国际高等研究院（SISSA）和意大利国家核物理研究所（INFN））；Rudolf Peierls Centre for Theoretical Physics, University of Oxford（牛津大学鲁道夫·派尔斯理论物理中心）
The effect of random velocity field on the kinetics of single-species and two-species annihilation reactions is analysed near two dimensions in the framework of the field-theoretic renormalisation group. Fluctuations of particle density are modeled within the approach of Doi. The random incompressible velocity field is generated by stochastically forced Navier-Stokes equation in which thermal fluctuations - relevant below two dimensions - are taken into account.
We study the spreading kinetics of a monolayer of hard-core particles on a semi-infinite, chemically heterogeneous solid substrate, one side of which is coupled to a particle reservoir. The substrate is modeled as a square lattice containing two types of sites -- ordinary ones and special, chemically active sites placed at random positions with mean concentration $α$. These special sites temporarily immobilize particles of the monolayer which then serve as impenetrable obstacles for the other particles. In terms of a mean-field-type theory, we show that the mean displacement $X_0(t)$ of the mo…
Chemotaxis is the response of a particle to a gradient in the chemical composition of the environment. While it was originally observed for biological organisms, it is of great interest in the context of synthetic active particles such as nanomotors. Experimental demonstration of chemotaxis for chemically-powered colloidal nanomotor was reported in the literature in the context of chemo-attraction in a still fluid or in a microfluidic channel where the gradient is sustained by a specific inlet geometry. In this work, we use mesoscopic particle-based simulations of the colloid and solvent to de…
Nonequilibrium thermodynamics of a system situated in a sustained environment with influx and efflux is usually treated as a subsystem in a larger, closed "universe". It remains a question what the minimally required description for the surrounding of such an open driven system is, so that its nonequilibrium thermodynamics can be established solely based on the internal stochastic kinetics. We provide a solution to this problem using insights from studies of molecular motors in a chemical nonequilibrium steady state (NESS) with sustained external drive through a regenerating system, or in a qu…
Macroscopic cyclic heat engines have been a major motivation for the emergence of thermodynamics. In the last decade, cyclic heat engines that have large fluctuations and operate at finite time were studied within the more modern framework of stochastic thermodynamics. The second law for such heat engines states that the efficiency cannot be larger than the Carnot efficiency. The concept of cyclic active heat engines for a system in the presence of hidden dissipative degrees of freedom, also known as a nonequilibrium or active reservoir, has also been studied in theory and experiment. Such act…
Microorganisms such as bacteria are active matters which consume chemical energy and generate their unique run-and-tumble motion. A swarm of such microorganisms provide a nonequilibrium active environment whose noise characteristics are different from those of thermal equilibrium reservoirs. One important difference is a finite persistence time, which is considerably large compared to that of the equilibrium noise, that is, the active noise is colored. Here, we study a mesoscopic energy-harvesting device (engine) with active reservoirs harnessing this noise nature. For a simple linear model, w…
Thermodynamics of nanoscale devices is an active area of research. Despite their noisy surrounding they often produce mechanical work (e.g. micro-heat engines), display rectified Brownian motion (e.g. molecular motors). This invokes research in terms of experimentally quantifiable thermodynamic efficiencies. Here, a Brownian particle is driven by a harmonic confinement with time-periodic contraction and expansion. The system produces work by being alternately (time-periodically) connected to baths with different dissipations. We analyze the system theoretically using stochastic thermodynamics.…
Heat-to-motion conversion for quantum active matter
Freie Universität Berlin（柏林自由大学）；The Abdus Salam International Center for Theoretical Physics（阿卜杜斯·萨拉姆国际理论物理中心）；Università di Napoli “Federico II”（那不勒斯费德里科二世大学）；Centro Atómico Bariloche（巴里洛切原子能中心）；Instituto de Nanociencia y Nanotecnología CONICET-CNEA（阿根廷国家科学和技术研究委员会-国家原子能委员会纳米科学与技术研究所）
From synthetic active devices such as self-propelling Janus colloids to micro-organisms like bacteria, micro-algae, living cells in tissues, active fluctuations are ubiquitous. Thermodynamics of small systems involving thermal as well as active fluctuations are of immense importance. They can be employed to extract thermodynamic work. Here we propose a simple model system that can produce thermodynamic work exploiting active fluctuations. We consider a Brownian particle, trapped by an externally controlled harmonic confinement which time-periodically contracts and expands by modulating its spr…
The notion of a nonequilibrium heat capacity is important for bio-energetics and for calorimetry of active materials more generally. It centers around the notion of excess heat or excess work dissipated during a quasistatic relaxation between different nonequilibrium conditions. We give exact results for active random walks moving in an energy landscape on a graph, based on calculations employing the matrix-tree and matrix-forest theorems. That graphical method applies to any Markov jump process under the physical condition of local detailed balance, and is not restricted to the examples given…
We perform an extensive analysis of passive as well as active micro-heat engines with different single-particle stochastic models. Using stochastic thermodynamics we calculate thermodynamic work, heat, entropy production and efficiency of passive and active Brownian heat engines analytically as well as numerically and compare them. We run the heat engines with a protocol for which the average thermodynamic quantities are calculated exactly for an arbitrary cycle time. We also discuss about the group of protocols for which exact non-quasistatic calculations can be done, completely in the passiv…
One of the major challenges in stochastic thermodynamics is to compute the distributions of stochastic observables for small-scale systems for which fluctuations play a significant role. Hitherto much theoretical and experimental research has focused on systems composed of passive Brownian particles. In this paper, we study the heat fluctuations in a system of interacting active particles. Specifically we consider a one-dimensional harmonic chain of $N$ active Ornstein-Uhlenbeck particles, with the chain ends connected to heat baths of different temperatures. We compute the moment-generating f…
The topic of microscopic heat engine has undergone intensive research in recent years. Microscopic heat engines can exploit thermal as well as active fluctuations to extract thermodynamic work. We investigate the properties of a microscopic Stirling's engine that uses an active (self-propelling) particle as a working substance, in contact with two thermal baths. It is shown that the presence of activity leads to an enhanced performance of the engine. The efficiency can be improved by increasing the activity strength for all cycle time, including the non-quasistatic regime. We verify that the a…
Many kinds of active particles, such as bacteria or active colloids, move in a thermostatted fluid by means of self-propulsion. Energy injected by such a non-equilibrium force is eventually dissipated as heat in the thermostat. Since thermal fluctuations are much faster and weaker than self-propulsion forces, they are often neglected, blurring the identification of dissipated heat in theoretical models. For the same reason, some freedom - or arbitrariness - appears when defining entropy production. Recently three different recipes to define heat and entropy production have been proposed for th…
Methods of stochastic thermodynamics and hydrodynamics are applied to the a recently introduced model of active particles. The model consists of an overdamped particle subject to Gaussian coloured noise. Inspired by stochastic thermodynamics, we derive from the system's Fokker-Planck equation the average exchanges of heat and work with the active bath and the associated entropy production. We show that a Clausius inequality holds, with the local (non-uniform) temperature of the active bath replacing the uniform temperature usually encountered in equilibrium systems. Furthermore, by restricting…
When do non-equilibrium forms of disordered energy qualify as heat? \textcolor{blue}{We address this question in the context of cyclically operating heat engines in contact with a non-equilibrium energy reservoir that defies the zeroth law of thermodynamics. To consistently address the latter as a heat bath requires the existence of a precise mapping to an equivalent cycle with an equilibrium bath at a time-dependent effective temperature. We identify the most general setup for which this can generically be ascertained and thoroughly discuss an analytically tractable, experimentally relevant s…
Active Brownian engines rectify energy from reservoirs composed of self-propelling non-equilibrium molecules into work. We consider a class of such engines based on an underdamped Brownian particle trapped in a power-law potential. The energy they transform has thermodynamic properties of heat only if the non-equilibrium reservoir can be assigned a suitable effective temperature consistent with the second law and thus yielding an upper bound on the engine efficiency. The effective temperature exists if the total force exerted on the particle by the bath is not correlated with the particle posi…
