We present a shared-memory parallelization of flow-based refinement, which is considered the most powerful iterative improvement technique for hypergraph partitioning at the moment. Flow-based refinement works on bipartitions, so current sequential partitioners schedule it on different block pairs to improve $k$-way partitions. We investigate two different sources of parallelism: a parallel scheduling scheme and a parallel maximum flow algorithm based on the well-known push-relabel algorithm. In addition to thoroughly engineered implementations, we propose several optimizations that substantially accelerate the algorithm in practice, enabling the use on extremely large hypergraphs (up to 1 billion pins). We integrate our approach in the state-of-the-art parallel multilevel framework Mt-KaHyPar and conduct extensive experiments on a benchmark set of more than 500 real-world hypergraphs, to show that the partition quality of our code is on par with the highest quality sequential code (KaHyPar), while being an order of magnitude faster with 10 threads.
Balanced hypergraph partitioning is a classical NP-hard optimization problem with applications in various domains such as VLSI design, simulating quantum circuits, optimizing data placement in distributed databases or minimizing communication volume in high-performance computing. Engineering parallel heuristics for this problem is a topic of recent research. Most of them are non-deterministic though. In this work, we design and implement a highly scalable deterministic algorithm in the state-of-the-art parallel partitioning framework Mt-KaHyPar. On our extensive set of benchmark instances, it …
Many important real-world applications-such as social networks or distributed data bases-can be modeled as hypergraphs. In such a model, vertices represent entities-such as users or data records-whereas hyperedges model a group membership of the vertices-such as the authorship in a specific topic or the membership of a data record in a specific replicated shard. To optimize such applications, we need an efficient and effective solution to the NP-hard balanced k-way hypergraph partitioning problem. However, existing hypergraph partitioners that scale to very large graphs do not effectively expl…
Hypergraph partitioning is an important preprocessing step for optimizing data placement and minimizing communication volumes in high-performance computing applications. To cope with ever growing problem sizes, it has become increasingly important to develop fast parallel partitioning algorithms whose solution quality is competitive with existing sequential algorithms. To this end, we present Mt-KaHyPar, the first shared-memory multilevel hypergraph partitioner with parallel implementations of many techniques used by the sequential, high-quality partitioning systems: a parallel coarsening algo…
Algorithms for many hypergraph problems, including partitioning, utilize multilevel frameworks to achieve a good trade-off between the performance and the quality of results. In this paper we introduce two novel aggregative coarsening schemes and incorporate them within state-of-the-art hypergraph partitioner Zoltan. Our coarsening schemes are inspired by the algebraic multigrid and stable matching approaches. We demonstrate the effectiveness of the developed schemes as a part of multilevel hypergraph partitioning framework on a wide range of problems.
A directed acyclic hypergraph is a generalized concept of a directed acyclic graph, where each hyperedge can contain an arbitrary number of tails and heads. Directed hypergraphs can be used to model data flow and execution dependencies in streaming applications. Thus, hypergraph partitioning algorithms can be used to obtain efficient parallelizations for multiprocessor architectures. However, an acyclicity constraint on the partition is necessary when mapping streaming applications to embedded multiprocessors due to resource restrictions on this type of hardware. The acyclic hypergraph partiti…
The graph partitioning problem has many applications in scientific computing such as computer aided design, data mining, image compression and other applications with sparse-matrix vector multiplications as a kernel operation. In many cases it is advantageous to use hypergraphs as they, compared to graphs, have a more general structure and can be used to model more complex relationships between groups of objects. This motivates our focus on the less-studied hypergraph partitioning problem. In this paper, we propose a serial multi-level bipartitioning algorithm. One important step in current he…
We present a refinement framework for multilevel hypergraph partitioning that uses max-flow computations on pairs of blocks to improve the solution quality of a $k$-way partition. The framework generalizes the flow-based improvement algorithm of KaFFPa from graphs to hypergraphs and is integrated into the hypergraph partitioner KaHyPar. By reducing the size of hypergraph flow networks, improving the flow model used in KaFFPa, and developing techniques to improve the running time of our algorithm, we obtain a partitioner that computes the best solutions for a wide range of benchmark hypergraphs…
Hypergraph partitioning has a wide range of important applications such as VLSI design or scientific computing. With focus on solution quality, we develop the first multilevel memetic algorithm to tackle the problem. Key components of our contribution are new effective multilevel recombination and mutation operations that provide a large amount of diversity. We perform a wide range of experiments on a benchmark set containing instances from application areas such VLSI, SAT solving, social networks, and scientific computing. Compared to the state-of-the-art hypergraph partitioning tools hMetis,…
We develop a multilevel algorithm for hypergraph partitioning that contracts the vertices one at a time. Using several caching and lazy-evaluation techniques during coarsening and refinement, we reduce the running time by up to two-orders of magnitude compared to a naive $n$-level algorithm that would be adequate for ordinary graph partitioning. The overall performance is even better than the widely used hMetis hypergraph partitioner that uses a classical multilevel algorithm with few levels. Aided by a portfolio-based approach to initial partitioning and adaptive budgeting of imbalance within…
We present a shared-memory algorithm to compute high-quality solutions to the balanced $k$-way hypergraph partitioning problem. This problem asks for a partition of the vertex set into $k$ disjoint blocks of bounded size that minimizes the connectivity metric (i.e., the sum of the number of different blocks connected by each hyperedge). High solution quality is achieved by parallelizing the core technique of the currently best sequential partitioner KaHyPar: the most extreme $n$-level version of the widely used multilevel paradigm, where only a single vertex is contracted on each level. This a…
Many well-known, real-world problems involve dynamic data which describe the relationship among the entities. Hypergraphs are powerful combinatorial structures that are frequently used to model such data. For many of today's data-centric applications, this data is streaming; new items arrive continuously, and the data grows with time. With paradigms such as Internet of Things and Edge Computing, such applications become more natural and more practical. In this work, we assume a streaming model where the data is modeled as a hypergraph, which is generated at the edge. This data then partitioned…
Partitioning the vertices of a (hyper)graph into k roughly balanced blocks such that few (hyper)edges run between blocks is a key problem for large-scale distributed processing. A current trend for partitioning huge (hyper)graphs using low computational resources are streaming algorithms. In this work, we propose FREIGHT: a Fast stREamInG Hypergraph parTitioning algorithm which is an adaptation of the widely-known graph-based algorithm Fennel. By using an efficient data structure, we make the overall running of FREIGHT linearly dependent on the pin-count of the hypergraph and the memory consum…
We develop a multilevel algorithm for hypergraph partitioning that contracts the vertices one at a time and thus allows very high quality. This includes a rating function that avoids nonuniform vertex weights, an efficient "semi-dynamic" hypergraph data structure, a very fast coarsening algorithm, and two new local search algorithms. One is a $k$-way hypergraph adaptation of Fiduccia-Mattheyses local search and gives high quality at reasonable cost. The other is an adaptation of size-constrained label propagation to hypergraphs. Comparisons with hMetis and PaToH indicate that the new algorithm…
The balanced hypergraph partitioning problem is to partition a hypergraph into $k$ disjoint blocks of bounded size such that the sum of the number of blocks connected by each hyperedge is minimized. We present an improvement to the flow-based refinement framework of KaHyPar-MF, the current state-of-the-art multilevel $k$-way hypergraph partitioning algorithm for high-quality solutions. Our improvement is based on the recently proposed HyperFlowCutter algorithm for computing bipartitions of unweighted hypergraphs by solving a sequence of incremental maximum flow problems. Since vertices and hyp…
The balanced hypergraph partitioning problem (HGP) is to partition the vertex set of a hypergraph into k disjoint blocks of bounded weight, while minimizing an objective function defined on the hyperedges. Whereas real-world applications often use vertex and edge weights to accurately model the underlying problem, the HGP research community commonly works with unweighted instances. In this paper, we argue that, in the presence of vertex weights, current balance constraint definitions either yield infeasible partitioning problems or allow unnecessarily large imbalances and propose a new definit…
The modeling flexibility provided by hypergraphs has drawn a lot of interest from the combinatorial scientific community, leading to novel models and algorithms, their applications, and development of associated tools. Hypergraphs are now a standard tool in combinatorial scientific computing. The modeling flexibility of hypergraphs however, comes at a cost: algorithms on hypergraphs are inherently more complicated than those on graphs, which sometimes translate to nontrivial increases in processing times. Neither the modeling flexibility of hypergraphs, nor the runtime efficiency of graph algo…
This paper considers the balanced hypergraph partitioning problem, which asks for partitioning the vertices into $k$ disjoint blocks of bounded size while minimizing an objective function over the hyperedges. Here, we consider the most commonly used connectivity metric. We describe our open source hypergraph partitioner KaHyPar which is based on the successful multi-level approach -- driving it to the extreme of one level for (almost) every vertex. Using carefully designed data structures and dynamic update techniques, this approach offers a very good time-quality tradeoff. We present two prep…
Partitioning large matrices is an important problem in distributed linear algebra computing (used in ML among others). Briefly, our goal is to perform a sequence of matrix algebra operations in a distributed manner (whenever possible) on these large matrices. However, not all partitioning schemes work well with different matrix algebra operations and their implementations (algorithms). This is a type of data tiling problem. In this work we consider a theoretical model for a version of the matrix tiling problem in the setting of hypergraph labeling. We prove some hardness results and give a the…
Problems in scientific computing, such as distributing large sparse matrix operations, have analogous formulations as hypergraph partitioning problems. A hypergraph is a generalization of a traditional graph wherein "hyperedges" may connect any number of nodes. As a result, hypergraph partitioning is an NP-Hard problem to both solve or approximate. State-of-the-art algorithms that solve this problem follow the multilevel paradigm, which begins by iteratively "coarsening" the input hypergraph to smaller problem instances that share key structural features. Once identifying an approximate proble…
We propose a novel method to co-cluster the vertices and hyperedges of hypergraphs with edge-dependent vertex weights (EDVWs). In this hypergraph model, the contribution of every vertex to each of its incident hyperedges is represented through an edge-dependent weight, conferring the model higher expressivity than the classical hypergraph. In our method, we leverage random walks with EDVWs to construct a hypergraph Laplacian and use its spectral properties to embed vertices and hyperedges in a common space. We then cluster these embeddings to obtain our proposed co-clustering method, of partic…
We consider the problem of enumerating optimal solutions for two hypergraph $k$-partitioning problems -- namely, Hypergraph-$k$-Cut and Minmax-Hypergraph-$k$-Partition. The input in hypergraph $k$-partitioning problems is a hypergraph $G=(V, E)$ with positive hyperedge costs along with a fixed positive integer $k$. The goal is to find a partition of $V$ into $k$ non-empty parts $(V_1, V_2, \ldots, V_k)$ -- known as a $k$-partition -- so as to minimize an objective of interest. 1. If the objective of interest is the maximum cut value of the parts, then the problem is known as Minmax-Hypergraph-…
Whether or not the problem of finding maximal independent sets (MIS) in hypergraphs is in (R)NC is one of the fundamental problems in the theory of parallel computing. Unlike the well-understood case of MIS in graphs, for the hypergraph problem, our knowledge is quite limited despite considerable work. It is known that the problem is in \emph{RNC} when the edges of the hypergraph have constant size. For general hypergraphs with $n$ vertices and $m$ edges, the fastest previously known algorithm works in time $O(\sqrt{n})$ with $\text{poly}(m,n)$ processors. In this paper we give an EREW PRAM al…
Partitioning is a well studied research problem in the area of VLSI physical design automation. In this problem, input is an integrated circuit and output is a set of almost equal disjoint blocks. The main objective of partitioning is to assign the components of circuit to blocks in order to minimize the numbers of inter-block connections. A partitioning algorithm using hypergraph was proposed by Fiduccia and Mattheyses with linear time complexity which has been popularly known as FM algorithm. Most of the hypergraph based partitioning algorithms proposed in the literature are variants of FM a…
We design and implement a distributed algorithm for balanced $k$-way hypergraph partitioning that minimizes fanout, a fundamental hypergraph quantity also known as the communication volume and ($k-1$)-cut metric, by optimizing a novel objective called probabilistic fanout. This choice allows a simple local search heuristic to achieve comparable solution quality to the best existing hypergraph partitioners. Our algorithm is arbitrarily scalable due to a careful design that controls computational complexity, space complexity, and communication. In practice, we commonly process hypergraphs with b…
We present a recursive way to partition hypergraphs which creates and exploits hypergraph geometry and is suitable for many-core parallel architectures. Such partitionings are then used to bring sparse matrices in a recursive Bordered Block Diagonal form (for processor-oblivious parallel LU decomposition) or recursive Separated Block Diagonal form (for cache-oblivious sparse matrix-vector multiplication). We show that the quality of the obtained partitionings and orderings is competitive by comparing obtained fill-in for LU decomposition with SuperLU (with better results for 8 of the 28 test m…
A hypergraph is a set V of vertices and a set of non-empty subsets of V, called hyperedges. Unlike graphs, hypergraphs can capture higher-order interactions in social and communication networks that go beyond a simple union of pairwise relationships. In this paper, we consider the shortest path problem in hypergraphs. We develop two algorithms for finding and maintaining the shortest hyperpaths in a dynamic network with both weight and topological changes. These two algorithms are the first to address the fully dynamic shortest path problem in a general hypergraph. They complement each other b…
Edge-centric distributed computations have appeared as a recent technique to improve the shortcomings of think-like-a-vertex algorithms on large scale-free networks. In order to increase parallelism on this model, edge partitioning - partitioning edges into roughly equally sized blocks - has emerged as an alternative to traditional (node-based) graph partitioning. In this work, we give a distributed memory parallel algorithm to compute high-quality edge partitions in a scalable way. Our algorithm scales to networks with billions of edges, and runs efficiently on thousands of PEs. Our technique…
We describe an approach to parallel graph partitioning that scales to hundreds of processors and produces a high solution quality. For example, for many instances from Walshaw's benchmark collection we improve the best known partitioning. We use the well known framework of multi-level graph partitioning. All components are implemented by scalable parallel algorithms. Quality improvements compared to previous systems are due to better prioritization of edges to be contracted, better approximation algorithms for identifying matchings, better local search heuristics, and perhaps most notably, a p…
This paper severs as a user guide to the graph partitioning framework KaHIP (Karlsruhe High Quality Partitioning). We give a rough overview of the techniques used within the framework and describe the user interface as well as the file formats used. Moreover, we provide a short description of the current library functions provided within the framework. Since version 3.00 we support multilevel partitioning, memetic algorithms, distributed and shared-memory parallel algorithms, node separator and ordering algorithms, edge partitioning algorithms as well as ILP solvers.
Partitioning graphs into blocks of roughly equal size such that few edges run between blocks is a frequently needed operation in processing graphs. Recently, size, variety, and structural complexity of these networks has grown dramatically. Unfortunately, previous approaches to parallel graph partitioning have problems in this context since they often show a negative trade-off between speed and quality. We present an approach to multi-level shared-memory parallel graph partitioning that guarantees balanced solutions, shows high speed-ups for a variety of large graphs and yields very good quali…
Georgia Institute of Technology（佐治亚理工学院）；Sandia National Laboratories（桑迪亚国家实验室）；Heidelberg University（海德堡大学）；Karlsruhe Institute of Technology（卡尔斯鲁厄理工学院）；Humboldt-Universität zu Berlin（柏林洪堡大学）；Apple Inc.（苹果公司）
In recent years, significant advances have been made in the design and evaluation of balanced (hyper)graph partitioning algorithms. We survey trends of the last decade in practical algorithms for balanced (hyper)graph partitioning together with future research directions. Our work serves as an update to a previous survey on the topic. In particular, the survey extends the previous survey by also covering hypergraph partitioning and streaming algorithms, and has an additional focus on parallel algorithms.
We propose Distributed Neighbor Expansion (Distributed NE), a parallel and distributed graph partitioning method that can scale to trillion-edge graphs while providing high partitioning quality. Distributed NE is based on a new heuristic, called parallel expansion, where each partition is constructed in parallel by greedily expanding its edge set from a single vertex in such a way that the increase of the vertex cuts becomes local minimal. We theoretically prove that the proposed method has the upper bound in the partitioning quality. The empirical evaluation with various graphs shows that the…
In this paper, we propose HyperFlowCutter, an algorithm for balanced hypergraph bipartitioning. It is based on minimum S-T hyperedge cuts and maximum flows. It computes a sequence of bipartitions that optimize cut size and balance in the Pareto sense, being able to trade one for the other. HyperFlowCutter builds on the FlowCutter algorithm for partitioning graphs. We propose additional features, such as handling disconnected hypergraphs, novel methods for obtaining starting S,T pairs as well as an approach to refine a given partition with HyperFlowCutter. Our main contribution is ReBaHFC, a ne…
Processing large complex networks like social networks or web graphs has recently attracted considerable interest. In order to do this in parallel, we need to partition them into pieces of about equal size. Unfortunately, previous parallel graph partitioners originally developed for more regular mesh-like networks do not work well for these networks. This paper addresses this problem by parallelizing and adapting the label propagation technique originally developed for graph clustering. By introducing size constraints, label propagation becomes applicable for both the coarsening and the refine…
We study the approximability of multiway partitioning problems, examples of which include Multiway Cut, Node-weighted Multiway Cut, and Hypergraph Multiway Cut. We investigate these problems from the point of view of two possible generalizations: as Min-CSPs, and as Submodular Multiway Partition problems. These two generalizations lead to two natural relaxations, the Basic LP, and the Lovasz relaxation. We show that the Lovasz relaxation gives a (2-2/k)-approximation for Submodular Multiway Partition with $k$ terminals, improving a recent 2-approximation. We prove that this factor is optimal i…
$ $We study the $d$-Uniform Hypergraph Matching ($d$-UHM) problem: given an $n$-vertex hypergraph $G$ where every hyperedge is of size $d$, find a maximum cardinality set of disjoint hyperedges. For $d\geq3$, the problem of finding the maximum matching is NP-complete, and was one of Karp's 21 $\mathcal{NP}$-complete problems. In this paper we are interested in the problem of finding matchings in hypergraphs in the massively parallel computation (MPC) model that is a common abstraction of MapReduce-style computation. In this model, we present the first three parallel algorithms for $d$-Uniform …
Partitioning a graph into blocks of "roughly equal" weight while cutting only few edges is a fundamental problem in computer science with a wide range of applications. In particular, the problem is a building block in applications that require parallel processing. While the amount of available cores in parallel architectures has significantly increased in recent years, state-of-the-art graph partitioning algorithms do not work well if the input needs to be partitioned into a large number of blocks. Often currently available algorithms compute highly imbalanced solutions, solutions of low quali…
In this article we will present a graph partitioning algorithm which partitions a graph into two different types of components: the well-known `strongly connected components' as well as another type of components we call `connected acyclic component'. We will give an algorithm based on Tarjan's algorithm for finding strongly connected components used to find such a partitioning. We will also show that the partitioning given by the algorithm is unique and that the underlying graph can be represented as a directed acyclic graph (similar to a pure strongly connected component partitioning). In th…
The analysis of several algorithms and data structures can be framed as a peeling process on a random hypergraph: vertices with degree less than k are removed until there are no vertices of degree less than k left. The remaining hypergraph is known as the k-core. In this paper, we analyze parallel peeling processes, where in each round, all vertices of degree less than k are removed. It is known that, below a specific edge density threshold, the k-core is empty with high probability. We show that, with high probability, below this threshold, only (log log n)/log(k-1)(r-1) + O(1) rounds of peel…
This paper proposes multiple extensions to the popular bicriterion transit routing approach -- Trip-Based Transit Routing (TBTR). Specifically, building on the premise of the HypRAPTOR algorithm, we first extend TBTR to its partitioning variant -- HypTBTR. However, the improvement in query times of HyTBTR over TBTR comes at the cost of increased preprocessing. To counter this issue, two new techniques are proposed -- a One-To-Many variant of TBTR and multilevel partitioning. Our One-To-Many algorithm can rapidly solve profile queries, which not only reduces the preprocessing time for HypTBTR, …
We study two mixed robust/average-case submodular partitioning problems that we collectively call Submodular Partitioning. These problems generalize both purely robust instances of the problem (namely max-min submodular fair allocation (SFA) and min-max submodular load balancing (SLB) and also generalize average-case instances (that is the submodular welfare problem (SWP) and submodular multiway partition (SMP). While the robust versions have been studied in the theory community, existing work has focused on tight approximation guarantees, and the resultant algorithms are not, in general, scal…
Purdue University（普渡大学）；University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）
We introduce a new convex optimization problem, termed quadratic decomposable submodular function minimization (QDSFM), which allows to model a number of learning tasks on graphs and hypergraphs. The problem exhibits close ties to decomposable submodular function minimization (DSFM), yet is much more challenging to solve. We approach the problem via a new dual strategy and formulate an objective that can be optimized through a number of double-loop algorithms. The outer-loop uses either random coordinate descent (RCD) or alternative projection (AP) methods, for both of which we prove linear co…
Given a hypergraph $H = (V,E)$, what is the smallest subset $X \subseteq V$ such that $e \cap X \neq \emptyset$ holds for all $e \in E$? This problem, known as the hitting set problem, is a basic problem in parameterized complexity theory. There are well-known kernelization algorithms for it, which get a hypergraph $H$ and a number $k$ as input and output a hypergraph $H'$ such that (1) $H$ has a hitting set of size $k$ if, and only if, $H'$ has such a hitting set and (2) the size of $H'$ depends only on $k$ and on the maximum cardinality $d$ of edges in $H$. The algorithms run in polynomial t…
Directed graphs are widely used to model data flow and execution dependencies in streaming applications. This enables the utilization of graph partitioning algorithms for the problem of parallelizing computation for multiprocessor architectures. However due to resource restrictions, an acyclicity constraint on the partition is necessary when mapping streaming applications to an embedded multiprocessor. Here, we contribute a multi-level algorithm for the acyclic graph partitioning problem. Based on this, we engineer an evolutionary algorithm to further reduce communication cost, as well as to i…
