The analysis of several algorithms and data structures can be framed as a peeling process on a random hypergraph: vertices with degree less than k are removed until there are no vertices of degree less than k left. The remaining hypergraph is known as the k-core. In this paper, we analyze parallel peeling processes, where in each round, all vertices of degree less than k are removed. It is known that, below a specific edge density threshold, the k-core is empty with high probability. We show that, with high probability, below this threshold, only (log log n)/log(k-1)(r-1) + O(1) rounds of peeling are needed to obtain the empty k-core for r-uniform hypergraphs. Interestingly, we show that above this threshold, Omega(log n) rounds of peeling are required to find the non-empty k-core. Since most algorithms and data structures aim to peel to an empty k-core, this asymmetry appears fortunate. We verify the theoretical results both with simulation and with a parallel implementation using graphics processing units (GPUs). Our implementation provides insights into how to structure parallel peeling algorithms for efficiency in practice.
We present a new parallel algorithm for $k$-clique counting/listing that has polylogarithmic span (parallel time) and is work-efficient (matches the work of the best sequential algorithm) for sparse graphs. Our algorithm is based on computing low out-degree orientations, which we present new linear-work and polylogarithmic-span algorithms for computing in parallel. We also present new parallel algorithms for producing unbiased estimations of clique counts using graph sparsification. Finally, we design two new parallel work-efficient algorithms for approximating the $k$-clique densest subgraph,…
The computation of a peeling order in a randomly generated hypergraph is the most time-consuming step in a number of constructions, such as perfect hashing schemes, random $r$-SAT solvers, error-correcting codes, and approximate set encodings. While there exists a straightforward linear time algorithm, its poor I/O performance makes it impractical for hypergraphs whose size exceeds the available internal memory. We show how to reduce the computation of a peeling order to a small number of sequential scans and sorts, and analyze its I/O complexity in the cache-oblivious model. The resulting alg…
The problem of finding the densest subgraph in a given graph has several applications in graph mining, particularly in areas like social network analysis, protein and gene analyses etc. Depending on the application, finding dense subgraphs can be used to determine regions of high importance, similar characteristics or enhanced interaction. The densest subgraph extraction problem is a fundamentally a non-linear optimization problem. Nevertheless, it can be solved in polynomial time by an exact algorithm based on the iterative solution of a series of maximum flow sub-problems. Despite its polyno…
Core decomposition is a fundamental operator in network analysis. In this paper, we study the problem of computing distance-generalized core decomposition on a network. A distance-generalized core, also termed $(k, h)$-core, is a maximal subgraph in which every vertex has at least $k$ other vertices at distance no larger than $h$. The state-of-the-art algorithm for solving this problem is based on a peeling technique which iteratively removes the vertex (denoted by $v$) from the graph that has the smallest $h$-degree. The $h$-degree of a vertex $v$ denotes the number of other vertices that are…
Given a set of $n$ points $S$ in the plane, a triangulation $T$ of $S$ is a maximal set of non-crossing segments with endpoints in $S$. We present an algorithm that computes the number of triangulations on a given set of $n$ points in time $n^{(11+ o(1))\sqrt{n} }$, significantly improving the previous best running time of $O(2^n n^2)$ by Alvarez and Seidel [SoCG 2013]. Our main tool is identifying separators of size $O(\sqrt{n})$ of a triangulation in a canonical way. The definition of the separators are based on the decomposition of the triangulation into nested layers ("cactus graphs"). Bas…
Finding dense subgraphs of a large graph is a standard problem in graph mining that has been studied extensively both for its theoretical richness and its many practical applications. In this paper we introduce a new family of dense subgraph objectives, parameterized by a single parameter $p$, based on computing generalized means of degree sequences of a subgraph. Our objective captures both the standard densest subgraph problem and the maximum $k$-core as special cases, and provides a way to interpolate between and extrapolate beyond these two objectives when searching for other notions of de…
The Massive Parallel Computation (MPC) model is a theoretical framework for popular parallel and distributed platforms such as MapReduce, Hadoop, or Spark. We consider the task of computing a large matching or small vertex cover in this model when the space per machine is $n^δ$ for $δ\in (0,1)$, where $n$ is the number of vertices in the input graph. A direct simulation of classic PRAM and distributed algorithms from the 1980s results in algorithms that require at least a logarithmic number of MPC rounds. We give the first algorithm that breaks this logarithmic barrier and runs in $\tilde O(\s…
In this paper, first we give a sequential linear-time algorithm for the longest path problem in meshes. This algorithm can be considered as an improvement of [13]. Then based on this sequential algorithm, we present a constant-time parallel algorithm for the problem which can be run on every parallel machine.
We describe a simple algorithm for spectral graph sparsification, based on iterative computations of weighted spanners and uniform sampling. Leveraging the algorithms of Baswana and Sen for computing spanners, we obtain the first distributed spectral sparsification algorithm. We also obtain a parallel algorithm with improved work and time guarantees. Combining this algorithm with the parallel framework of Peng and Spielman for solving symmetric diagonally dominant linear systems, we get a parallel solver which is much closer to being practical and significantly more efficient in terms of the t…
One of the simplest problems on directed graphs is that of identifying the set of vertices reachable from a designated source vertex. This problem can be solved easily sequentially by performing a graph search, but efficient parallel algorithms have eluded researchers for decades. For sparse high-diameter graphs in particular, there is no known work-efficient parallel algorithm with nontrivial parallelism. This amounts to one of the most fundamental open questions in parallel graph algorithms: Is there a parallel algorithm for digraph reachability with nearly linear work? This paper shows that…
We present a randomized parallel algorithm that computes the greatest common divisor of two integers of n bits in length with probability 1-o(1) that takes O(n loglog n / log n) expected time using n^{6+ε} processors on the EREW PRAM parallel model of computation. We believe this to be the first randomized sublinear time algorithm on the EREW PRAM for this problem.
We present a message-passing based parallel version of the Space Saving algorithm designed to solve the $k$--majority problem. The algorithm determines in parallel frequent items, i.e., those whose frequency is greater than a given threshold, and is therefore useful for iceberg queries and many other different contexts. We apply our algorithm to the detection of frequent items in both real and synthetic datasets whose probability distribution functions are a Hurwitz and a Zipf distribution respectively. Also, we compare its parallel performances and accuracy against a parallel algorithm recent…
We use exponential start time clustering to design faster and more work-efficient parallel graph algorithms involving distances. Previous algorithms usually rely on graph decomposition routines with strict restrictions on the diameters of the decomposed pieces. We weaken these bounds in favor of stronger local probabilistic guarantees. This allows more direct analyses of the overall process, giving: * Linear work parallel algorithms that construct spanners with $O(k)$ stretch and size $O(n^{1+1/k})$ in unweighted graphs, and size $O(n^{1+1/k} \log k)$ in weighted graphs. * Hopsets that lead to…
In this paper, we design parallel write-efficient geometric algorithms that perform asymptotically fewer writes than standard algorithms for the same problem. This is motivated by emerging non-volatile memory technologies with read performance being close to that of random access memory but writes being significantly more expensive in terms of energy and latency. We design algorithms for planar Delaunay triangulation, $k$-d trees, and static and dynamic augmented trees. Our algorithms are designed in the recently introduced Asymmetric Nested-Parallel Model, which captures the parallel setting …
In this paper we show that many sequential randomized incremental algorithms are in fact parallel. We consider algorithms for several problems including Delaunay triangulation, linear programming, closest pair, smallest enclosing disk, least-element lists, and strongly connected components. We analyze the dependences between iterations in an algorithm, and show that the dependence structure is shallow with high probability, or that by violating some dependences the structure is shallow and the work is not increased significantly. We identify three types of algorithms based on their dependences…
We present a new $O(k^2 \binom{n}{k}^2)$ method for generating an orthogonal basis of eigenvectors for the Johnson graph $J(n,k)$. Unlike standard methods for computing a full eigenbasis of sparse symmetric matrices, the algorithm presented here is non-iterative, and produces exact results under an infinite-precision computation model. In addition, our method is highly parallelizable; given access to unlimited parallel processors, the eigenbasis can be constructed in only $O(n)$ time given n and k. We also present an algorithm for computing projections onto the eigenspaces of $J(n,k)$ in paral…
We consider the problem of scheduling jobs with equal lengths on uniform parallel batch machines with non-identical capacities where each job can only be processed on a specified subset of machines called its processing set. For the case of equal release times, we give efficient exact algorithms for various objective functions. For the case of unequal release times, we give efficient exact algorithms for minimizing makespan.
In the area of Pattern Recognition and Matching, finding a Longest Common Subsequence plays an important role. In this paper, we have proposed one algorithm based on parallel computation. We have used OpenMP API package as middleware to send the data to different processors. We have tested our algorithm in a system having four processors and 2 GB physical memory. The best result showed that the parallel algorithm increases the performance (speed of computation) by 3.22.
Recently, the predicate detection problem was shown to be in the parallel complexity class NC. In this paper, we give the first work-optimal parallel algorithm to solve the predicate detection problem on a distributed computation with $n$ processes and at most $m$ states per process. The previous best known parallel predicate detection algorithm, ParallelCut, has time complexity $O(\log mn)$ and work complexity $O(m^3n^3\log mn)$. We give two algorithms, a deterministic algorithm with time complexity $O(mn)$ and work complexity $O(mn^2)$, and a randomized algorithm with time complexity $(mn)^{…
Boston University（波士顿大学）；Northeastern University（东北大学）
In this work, we give a new parallel algorithm for the problem of maximizing a non-monotone diminishing returns submodular function subject to a cardinality constraint. For any desired accuracy $ε$, our algorithm achieves a $1/e - ε$ approximation using $O(\log{n} \log(1/ε) / ε^3)$ parallel rounds of function evaluations. The approximation guarantee nearly matches the best approximation guarantee known for the problem in the sequential setting and the number of parallel rounds is nearly-optimal for any constant $ε$. Previous algorithms achieve worse approximation guarantees using $Ω(\log^2{n})…
This thesis introduces PEMS2, an improvement to PEMS (Parallel External Memory System). PEMS executes Bulk-Synchronous Parallel (BSP) algorithms in an External Memory (EM) context, enabling computation with very large data sets which exceed the size of main memory. Many parallel algorithms have been designed and implemented for Bulk-Synchronous Parallel models of computation. Such algorithms generally assume that the entire data set is stored in main memory at once. PEMS overcomes this limitation without requiring any modification to the algorithm by using disk space as memory for additional "…
Motivated by the observation that FIFO-based push-relabel algorithms are able to outperform highest label-based variants on modern, large maximum flow problem instances, we introduce an efficient implementation of the algorithm that uses coarse-grained parallelism to avoid the problems of existing parallel approaches. We demonstrate good relative and absolute speedups of our algorithm on a set of large graph instances taken from real-world applications. On a modern 40-core machine, our parallel implementation outperforms existing sequential implementations by up to a factor of 12 and other par…
It has been shown that the parallel Lattice Linear Predicate (LLP) algorithm solves many combinatorial optimization problems such as the shortest path problem, the stable marriage problem and the market clearing price problem. In this paper, we give the parallel LLP algorithm for many dynamic programming problems. In particular, we show that the LLP algorithm solves the longest subsequence problem, the optimal binary search tree problem, and the knapsack problem. Furthermore, the algorithm can be used to solve the constrained versions of these problems so long as the constraints are lattice li…
The k-center problem is one of several classic NP-hard clustering questions. For contemporary massive data sets, RAM-based algorithms become impractical. And although there exist good sequential algorithms for k-center, they are not easily parallelizable. In this paper, we design and implement parallel approximation algorithms for this problem. We observe that Gonzalez's greedy algorithm can be efficiently parallelized in several MapReduce rounds; in practice, we find that two rounds are sufficient, leading to a 4-approximation. We contrast this with an existing parallel algorithm for k-center…
Boston University（波士顿大学）；Northeastern University（东北大学）
We study parallel algorithms for the problem of maximizing a non-negative submodular function. Our main result is an algorithm that achieves a nearly-optimal $1/2 -ε$ approximation using $O(\log(1/ε) / ε)$ parallel rounds of function evaluations. Our algorithm is based on a continuous variant of the double greedy algorithm of Buchbinder et al. that achieves the optimal $1/2$ approximation in the sequential setting. Our algorithm applies more generally to the problem of maximizing a continuous diminishing-returns (DR) function.
We discuss how string sorting algorithms can be parallelized on modern multi-core shared memory machines. As a synthesis of the best sequential string sorting algorithms and successful parallel sorting algorithms for atomic objects, we propose string sample sort. The algorithm makes effective use of the memory hierarchy, uses additional word level parallelism, and largely avoids branch mispredictions. Additionally, we parallelize variants of multikey quicksort and radix sort that are also useful in certain situations.
We present a parallel approximation algorithm for a class of mixed packing and covering semidefinite programs which generalize on the class of positive semidefinite programs as considered by Jain and Yao [2011]. As a corollary we get a faster approximation algorithm for positive semidefinite programs with better dependence of the parallel running time on the approximation factor, as compared to that of Jain and Yao [2011]. Our algorithm and analysis is on similar lines as that of Young [2001] who considered analogous linear programs.
We present a simple parallel algorithm to test chordality of graphs which is based on the parallel Lexicographical Breadth-First Search algorithm. In total, the algorithm takes time O(N ) on N-threads machine and it performs work O(N 2 ) , where N is the number of vertices in a graph. Our implementation of the algorithm uses a GPU environment Nvidia CUDA C. The algorithm is implemented in CUDA 4.2 and it has been tested on Nvidia GeForce GTX 560 Ti of compute capability 2.1. At the end of the thesis we present the results achieved by our implementation and compare them with the results achieve…
To design efficient parallel algorithms, some recent papers showed that many sequential iterative algorithms can be directly parallelized but there are still challenges in achieving work-efficiency and high-parallelism. Work-efficiency can be hard for certain problems where the number of dependences is asymptotically more than optimal sequential work bound. To achieve high-parallelism, we want to process as many objects as possible in parallel. The goal is to achieve $\tilde{O}(D)$ span for a problem with the deepest dependence length $D$. We refer to this property as round-efficiency. In this…
Enumerating simple cycles has important applications in computational biology, network science, and financial crime analysis. In this work, we focus on parallelising the state-of-the-art simple cycle enumeration algorithms by Johnson and Read-Tarjan along with their applications to temporal graphs. To our knowledge, we are the first ones to parallelise these two algorithms in a fine-grained manner. We are also the first to demonstrate experimentally a linear performance scaling. Such a scaling is made possible by our decomposition of long sequential searches into fine-grained tasks, which are …
Parallel parameterized complexity theory studies how fixed-parameter tractable (fpt) problems can be solved in parallel. Previous theoretical work focused on parallel algorithms that are very fast in principle, but did not take into account that when we only have a small number of processors (between 2 and, say, 1024), it is more important that the parallel algorithms are work-efficient. In the present paper we investigate how work-efficient fpt algorithms can be designed. We review standard methods from fpt theory, like kernelization, search trees, and interleaving, and prove trade-offs for t…
The Graph Isomorphism (GI) problem is a theoretically interesting problem because it has not been proven to be in P nor to be NP-complete. Babai made a breakthrough in 2015 when announcing a quasipolynomial time algorithm for GI problem. Babai's work gives the most theoretically efficient algorithm for GI, as well as a strong evidence favoring the idea that class GI $\ne$ NP and thus P $\ne$ NP. Based on Babai's algorithm, we prove that GI can further be solved by a parallel algorithm that runs in polynomial time using a quasipolynomial number of processors. We achieve that result by identifyi…
We present a work-efficient parallel level-synchronous Breadth First Search (BFS) algorithm for shared-memory architectures which achieves the theoretical lower bound on parallel running time. The optimality holds regardless of the shape of the graph. We also demonstrate the implication of this optimality for the energy consumption of the program empirically. The key idea is never to use more processing cores than necessary to complete the work in any computation step efficiently. We keep the rest of the cores idle to save energy and to reduce other resource contentions (e.g., bandwidth, share…
Many parallel algorithms use at least linear auxiliary space in the size of the input to enable computations to be done independently without conflicts. Unfortunately, this extra space can be prohibitive for memory-limited machines, preventing large inputs from being processed. Therefore, it is desirable to design parallel in-place algorithms that use sublinear (or even polylogarithmic) auxiliary space. In this paper, we bridge the gap between theory and practice for parallel in-place (PIP) algorithms. We first define two computational models based on fork-join parallelism, which reflect moder…
In this paper, we explore the limits of graphics processors (GPUs) for general purpose parallel computing by studying problems that require highly irregular data access patterns: parallel graph algorithms for list ranking and connected components. Such graph problems represent a worst case scenario for coalescing parallel memory accesses on GPUs which is critical for good GPU performance. Our experimental study indicates that PRAM algorithms are a good starting point for developing efficient parallel GPU methods but require non-trivial modifications to ensure good GPU performance. We present a…
The Aho-Corasick algorithm is multiple patterns searching algorithm running sequentially in various applications like network intrusion detection and bioinformatics for finding several input strings within a given large input string. The parallel version of the Aho-Corasick algorithm is called as Parallel Failure-less Aho-Corasick algorithm because it doesn't need failure links like in the original Aho-Corasick algorithm. In this research, we implemented an application specific parallel failureless Aho-Corasick algorithm to the general purpose graphics processing unit by applying several cache…
A generalization of the heapsort algorithm is proposed. At the expense of about 50% more comparison and move operations for typical cases, the dualheap sort algorithm offers several advantages over heapsort: improved cache performance, better performance if the input happens to be already sorted, and easier parallel implementations.
In this paper, we describe efficient MapReduce simulations of parallel algorithms specified in the BSP and PRAM models. We also provide some applications of these simulation results to problems in parallel computational geometry for the MapReduce framework, which result in efficient MapReduce algorithms for sorting, 1-dimensional all nearest-neighbors, 2-dimensional convex hulls, 3-dimensional convex hulls, and fixed-dimensional linear programming. For the case when reducers can have a buffer size of $B=O(n^ε)$, for a small constant $ε>0$, all of our MapReduce algorithms for these applications…
Evaluating how well a whole system or set of subsystems performs is one of the primary objectives of performance testing. We can tell via performance assessment if the architecture implementation meets the design objectives. Performance evaluations of several parallel algorithms are compared in this study. Both theoretical and experimental methods are used in performance assessment as a subdiscipline in computer science. The parallel method outperforms its sequential counterpart in terms of throughput. The parallel algorithm's performance (speedup) is examined, as shown in the result.
Parallel matrix multiplication is one of the most studied fundamental problems in distributed and high performance computing. We obtain a new parallel algorithm that is based on Strassen's fast matrix multiplication and minimizes communication. The algorithm outperforms all known parallel matrix multiplication algorithms, classical and Strassen-based, both asymptotically and in practice. A critical bottleneck in parallelizing Strassen's algorithm is the communication between the processors. Ballard, Demmel, Holtz, and Schwartz (SPAA'11) prove lower bounds on these communication costs, using ex…
