我们提出了一种近线性标度的显式相关耦合簇单双激发并带有微扰三激发方法（CCSD(T)$_{\overline{\text{F12}}}$）的公式化，用于开壳层物种的高自旋态。该方法基于常规的开壳层 CCSD 形式 [M. Saitow et al., J. Chem. Phys. 146, 164105 (2017)]，利用了域局域对自然轨道（DLPNO）框架。使用自旋无关的对自然轨道集合确保了与先前报道的闭壳层形式完全一致，且对计算成本的影响极小（例如，对于 $\text{C}_\text{160}\text{H}_{\text{322}}$ 正烷烃，开壳层形式仅比闭壳层对应形式慢 1.5 倍，测得的尺寸复杂度约为 1.2）。在单台多核计算机上，不到 3 天即可完成对包含超过 550 个原子和 5000 个基函数的开壳层系统在接近完备基组（CBS）极限下的耦合簇能量评估。对于 348 种核心燃烧物种基准集 [J. Klippenstein et al., J. Phys. Chem. A 121, 6580 (2017)] 中最大的 50 个分子，aug-cc-pVTZ DLPNO-CCSD(T)$_{\overline{\text{F12}}}$ 对生成热的贡献与外推的 CBS CCSD(T) 参考值的均方根偏差（RMSD）为 0.3 kcal/mol。对于包含小闭壳层和开壳层分子的更具挑战性的 50 个反应集 [G. Knizia et al., J. Chem. Phys. 130, 054104 (2009)]，aug-cc-pVQ(+d)Z DLPNO-CCSD(T)$_{\overline{\text{F12}}}$ 相对于 CBS CCSD(T) 估计值的 RMSD 约为 0.4 kcal/mol。
英文摘要：
We present a near-linear scaling formulation of the explicitly-correlated coupled-cluster singles and doubles with perturbative triples method (CCSD(T)$_{\overline{\text{F12}}}$) for high-spin states of open-shell species. The approach is based on the conventional open-shell CCSD formalism [M. Saitow et al., J. Chem. Phys. 146, 164105 (2017)] utilizing the domain local pair-natural orbitals (DLPNO) framework. The use of spin-independent set of pair-natural orbitals ensures exact agreement with the closed-shell formalism reported previously, with only marginally impact on the cost (e.g. the open-shell formalism is only 1.5 times slower than the closed-shell counterpart for the $\text{C}_\text{160}\text{H}_{\text{322}}$ n-alkane, with the measured size complexity of $\approx1.2$). Evaluation of coupled-cluster energies near the complete-basis-set (CBS) limit for open-shell systems with more than 550 atoms and 5000 basis functions is feasible on a single multi-core computer in less than 3 days. The aug-cc-pVTZ DLPNO-CCSD(T)$_{\overline{\text{F12}}}$ contribution to the heat of formation for the 50 largest molecules among the 348 core combustion species benchmark set [J. Klippenstein et al., J. Phys. Chem. A 121, 6580 (2017)] had root-mean-square deviation (RMSD) from the extrapolated CBS CCSD(T) reference values of 0.3 kcal/mol. For a more challenging set of 50 reactions involving small closed- and open-shell molecules [G. Knizia et al., J. Chem. Phys. 130, 054104 (2009)] the aug-cc-pVQ(+d)Z DLPNO-CCSD(T)$_{\overline{\text{F12}}}$ yielded a RMSD of $\sim$0.4 kcal/mol with respect to the CBS CCSD(T) estimate.
The spectra (rotational, rotation-vibrational or electronic) of diatomic molecules due to transitions involving only closed-shell ($^1Σ$) electronic states follow very regular, simple patterns and their theoretical analysis is usually straightforward. On the other hand, open-shell electronic states lead to more complicated spectral patterns and, moreover, often appear as a manifold of closely lying electronic states, leading to perturbations with even larger complexity. This is especially true when at least one of the atoms is a transition metal. Traditionally these complex cases have been ana…
Electron density distribution plays an essential role in predicting molecular properties. It is also a simple observable from which machine-learning models for molecular electronic structure can be derived. In the present work, we present the performance of the one-body Møller-Plesset second-order perturbation (OBMP2) theory that we have recently developed. In OBMP2, an effective one-body Hamiltonian including dynamic correlation at the MP2 level is derived using the canonical transformation followed by the cumulant approximation. We evaluate electron density and related properties of three gr…
The program {\sc Duo} (Yurchenko {\it et al.}, Computer Phys. Comms., 202 (2016) 262) provides direct solutions of the nuclear motion Schrödinger equation for the (coupled) potential energy curves of open shell diatomic molecules. Wavefunctions from {\sc Duo} are used to compute Landé $g$-factors valid for weak magnetic fields, the results are compared with the idealized predictions of both Hund's case (a) and Hund's case (b) coupling schemes. Test calculations are performed for AlO, NO, CrH and C$_2$. The computed $g_J$'s both provide a sensitive test of the underlying spectroscopic model use…
Due to its element- and site-specificity, inner-shell photoelectron spectroscopy is a widely used technique to probe the chemical structure of matter. Here we show that time-resolved inner-shell photoelectron spectroscopy can be employed to observe ultrafast chemical reactions and the electronic response to the nuclear motion with high sensitivity. The ultraviolet dissociation of iodomethane (CH$_3$I) is investigated by ionization above the iodine 4d edge, using time-resolved inner-shell photoelectron and photoion spectroscopy. The dynamics observed in the photoelectron spectra appear earlier …
We present a theoretical study of the impact of an electric field combined with a magnetic field on the rotational dynamics of open shell diatomic molecules. Within the rigid rotor approximation, we solve the time-independent Schrödinger equation including the fine-structure interactions and the Λ-doubling effects. We consider three sets of molecule specific parameters and several field regimes and investigate the interplay between the different interactions identifying the dominant one. The possibility of inducing couplings between the spin and rotational degrees of freedom is demonstrated.
Open-shell systems such as magnetic molecules or defects with a triplet ground state are challenging to describe in electronic structure methods, but are of great interest for quantum information applications. We demonstrate a spin-flip approach within the Bethe-Salpeter equation to calculate ground and excited states of open-shell molecules and defected solids. The approach works in periodic boundary conditions without any need for embedding or selection of a subspace. Our benchmark results for the torsion potential-energy surface of ethylene and the optical excitations of the diamond NV$^{-}…
Theory of long-range interactions between an atom in its ground S state and a linear molecule in a degenerate state with a non-zero projection of the electronic orbital angular momentum is presented. It is shown how the long-range coefficients can be related to the first and second-order molecular properties. The expressions for the long-range coefficients are written in terms of all components of the static and dynamic multipole polarizability tensor, including the nonadiagonal terms connecting states with the opposite projection of the electronic orbital angular momentum. It is also shown th…
We fabricate OLEDs using a stable neutral π radical, BDPA, as the emitter. There is only one electron in the singly occupied molecular orbital (SOMO) of this open-shell molecule. This feature makes the excited state of open-shell molecules be neither singlet nor triplet, but doublet. The key issue of how to harvest the triplet energy in an OLED is thus bypassed, due to the radiative decay of doublet is totally spin allowed. In the BDPA-based OLED, the emission was confirmed to be from the electronic transition from LUMO to SOMO, via the frontier molecular orbital analysis combined with the spe…
The computational prediction of atomistic structure is a long-standing problem in physics, chemistry, materials, and biology. Within conventional force-field or {\em ab initio} calculations, structure is determined through energy minimization, which is either approximate or computationally demanding. Alas, the accuracy-cost trade-off prohibits the generation of synthetic big data records with meaningful energy based conformational search and structure relaxation output. Exploiting implicit correlations among relaxed structures, our kernel ridge regression model, dubbed Graph-To-Structure (G2S)…
We have theoretically investigated the double core-hole (DCH) states of the open-shell molecules and examined the possibility of DCH spectroscopy by means of X-ray two-photon photoelectron spectroscopy (XTPPS). Energies of many DCH states were obtained by the CASSCF calculations and the generalized intra- and interatomic relaxation energies were evaluated. We show that XTPPS can extract these quantities by the measurement of single and double core-hole ionization potentials. We discuss the influence of chemical environment on the DCH states with two holes at the same atomic site and at two dif…
Global machine learning force fields (MLFFs), that have the capacity to capture collective many-atom interactions in molecular systems, currently only scale up to a few dozen atoms due a considerable growth of the model complexity with system size. For larger molecules, locality assumptions are typically introduced, with the consequence that non-local interactions are poorly or not at all described, even if those interactions are contained within the reference ab initio data. Here, we approach this challenge and develop an exact iterative parameter-free approach to train global symmetric gradi…
We studied the hydration of a single methanol molecule in aqueous solution by first-principle DFT-based molecular dynamics simulation. The calculations show that the local structural and short-time dynamical properties of the water molecules remain almost unchanged by the presence of the methanol, confirming the observation from recent experimental structural data for dilute solutions. We also see, in accordance with this experimental work, a distinct shell of water molecules that consists of about 15 molecules. We found no evidence for a strong tangential ordering of the water molecules in th…
The scaling of nuclear spin-dependent parity violating effects with increasing nuclear charge $Z$ is discussed in two series of isovalent open-shell diatomic molecules. The parameter $W_\mathrm{a}$ characterising the strength of parity violation in diatomic molecules is calculated in the framework of the zeroth-order regular approximation (ZORA) and found to be in good agreement with the $R(Z) Z^k$ scaling law derived for atoms in which $R(Z)$ represents a relativistic enhancement factor. The influence of electron correlation is studied on the molecular level, with spin-polarisation effects be…
Magnetic Feshbach resonances play a central role in experimental research of atomic gases at ultracold temperatures, as they allow one to control the microscopic interactions between ultracold atoms by tuning an applied magnetic field. These resonances arise due to strong hyperfine interactions between the unpaired electron and the nuclear magnetic moment of the alkali metal atoms. A major thrust of current research is to create an ultracold gas of diatomic alkali-metal molecules in the ground rovibrational state of the ground electronic $^1Σ$ state. Unlike alkali metal atoms, $^1Σ$ diatomic m…
Implementing a scalable quantum information processor using polar molecules in optical lattices requires precise control over the long-range dipole-dipole interaction between molecules in selected lattice sites. We present here a scheme using trapped open-shell $^2Σ$ polar molecules that allows dipolar exchange processes between nearest and next-nearest neighbors to be controlled to construct a generalized transverse Ising spin Hamiltonian with tunable $XX$, $YY$ and $XY$ couplings in the rotating frame of the driving lasers. The scheme requires a moderately strong bias magnetic field with nea…
Based on a simplest molecular orbital theory of H$_{2}^{+}$, a three-parameter model potential function is proposed to describe ground-state diatomic systems with closed-shell and/or S-type valence-shell constituents over a significantly wide range of internuclear distances. More than 200 weakly and strongly bound diatomics have been studied, including neutral and singly-charged diatomics (e.g., H$_{2}$, Li$_{2}$, LiH, Cd$_{2}$, Na$_{2}^{+}$, and RbH$^{-}$), long-range bound diatomics (e.g., NaAr, CdNe, He$_{2}$, CaHe, SrHe, and BaHe), metastable molecular dications (e.g., BeH$^{++}$, AlH$^{++…
We present a comparative study of the spatial distribution of the spin density (SD) of the ground state of CuCl2 using Density Functional Theory (DFT), quantum Monte Carlo (QMC), and post-Hartree-Fock wavefunction theory (WFT). A number of studies have shown that an accurate description of the electronic structure of the lowest-lying states of this molecule is particularly challenging due to the interplay between the strong dynamical correlation effects in the 3d shell of the copper atom and the delocalization of the 3d hole over the chlorine atoms. It is shown here that qualitatively differen…
The spin-exchange effect in spin-polarized electron collisions with unpolarized open-shell molecules, O$_2$, B$_2$, S$_2$ and Si$_2$, has been studied by the R-matrix method with the fixed-bond approximation. All of these molecules have ${}^3 Σ_{g}^{-}$ symmetry in their ground states. Usual integrated cross sections with unpolarized electrons has also been studied. We used the complete active space self consistent field orbitals and put more than 10 target electronic states in the R-matrix models. In electron O$_2$ elastic collisions, calculated polarization fractions agree well with the expe…
An effective Hamiltonian without symmetry restriction has been developed to model the rotational and fine structure of two nearly degenerate electronic states of an open-shell molecule. In addition to the rotational Hamiltonian for an asymmetric top, this spectroscopic model includes energy separation between the two states due to difference potential and zero-point energy difference, as well as the spin-orbit (SO), Coriolis, and electron spin-molecular rotation (SR) interactions. Hamiltonian matrices are computed using orbitally and fully symmetrized case (a) and case (b) basis sets. Intensit…
We show that products of the isotopic substitution reactions in experimentally accessible molecules such as NaK, RbCs, and SrF are cold according to their translational energy below hundreds of mK. For these chemical reactions, molecular products may occupy only the lowest rotational states. We also discuss the possibility of controlling the chemical reactions by the electric field in ultracold mixtures of molecules and atoms with low kinetic energy release, where one of the constituent atoms of colliding molecule is replaced by its isotope. This letter opens new avenues in investigating the b…
We present quantum-theoretical studies of collisions between an open-shell S-state atom and a ^2Pi-state molecule in the presence of a magnetic field. We analyze the collisional Hamiltonian and discuss possible mechanisms for inelastic collisions in such systems. The theory is applied to the collisions of the nitrogen atom (^4S) with the OH molecule, with both collision partners initially in fully spin-stretched (magnetically trappable) states, assuming that the interaction takes place exclusively on the two high-spin (quintet) potential energy surfaces. The surfaces for the quintet states are…
We present new interaction potential curves, calculated from first-principle, for the He$(^3$S)$...$H$_2$ and He$(^3$S)$...$Ar systems, relevant in Penning's ionization experiments. Two different approaches were applied: supermolecular using coupled cluster theory (CC) and perturbational within symmetry-adapted perturbation theory (SAPT). Both methods gave consistent results and the potentials were used to determine the positions of shape resonances in low collision energy scattering regime. We found a good agreement with the most recent scattering experiment of Henson {\em et al.} [Science {\…
Semiclassical description, based on electrostatics and Thomas-Fermi model is applied here to calculate dimensions of the electronic shell of a fullerene molecule and a nanotube. The internal radius of the electronic shell of a fullerene molecule, calculated within the framework of the model is 0.2808 nm. The external radius is 0.4182 nm. The experimental values are 0.279 nm and 0.429 nm correspondingly. This shows that semiclassical approach provides rather good description of the dimensions of the electronic shell in a fullerene molecule. Two types of dipole oscillations in a fullerene molecu…
We present an extension of our one-body Møller-Plesset second-order perturbation (OBMP2) method for open-shell systems. We derived the OBMP2 Hamiltonian through the canonical transformation followed by the cumulant approximation to reduce many-body operators into one-body ones. The resulting Hamiltonian consists of an uncorrelated Fock (unperturbed Hamiltonian) and a one-body correlation potential (perturbed Hamiltonian) composed of only double excitations. Molecular orbitals and associated energy levels are then relaxed via self-consistency, similar to Hartree-Fock, in the presence of the cor…
Our atomistic molecular dynamics simulations reveal the existence of bound and free water molecules in the hydration layer of an aqueous micelle. The bound water molecules can be either singly or doubly hydrogen bonded to the polar head group on the surface of the micelle. The ratio of bound to free water is found to be approximately equal to 9:1 at 300 K.
Photoelectron Spectroscopy and Circular Dichroism of an Open-Shell Organometallic Camphor Complex
Fritz-Haber-Institut der Max-Planck-Gesellschaft（马克斯·普朗克学会弗里茨·哈伯研究所）；Department of Chemistry, The University of Manchester（曼彻斯特大学化学系）；Synchrotron SOLEIL（索雷尔同步辐射中心）；School of Chemistry, The University of Nottingham（诺丁汉大学化学学院）
Understanding inner-shell excitations in molecules through spectroscopy of the 4f hole states of YbF
Center for Cold Matter, Blackett Laboratory, Imperial College London（帝国理工学院冷物质中心布莱克特实验室）；Fritz-Haber-Institut der Max-Planck-Gesellschaft（马克斯·普朗克学会弗里茨·哈伯研究所）
A theoretical study of the structural and electronic properties of the chloride ion and water molecules in the first hydration shell is presented. The calculations are performed on an ensemble of configurations obtained from molecular dynamics simulations of a single chloride ion in bulk water. The simulations utilize the polarizable AMOEBA force field for trajectory generation, and MP2-level calculations are performed to examine the electronic structure properties of the ions and surrounding waters in the external field of more distant waters. The ChelpG method is employed to explore the effe…
The hydrogen-poor, helium-rich and carbon-rich character of the gas around R Coronae Borealis (RCB) stars has been suggested to be a site for formation of C60 molecules. This suggestion is not supported by observations reported here showing that infrared transitions of C60 are not seen in a large sample of RCB stars observed with the Infrared Spectrograph on the Spitzer Space Telescope. The infrared C60 transitions are seen, however, in emission and blended with PAH-features in spectra of DY Cen and possibly also of V854 Cen, the two least hydrogen-deficient (hydrogen deficiency of only ~10-10…
We propose an imaging technique to follow core-hole wave-packet oscillations in the nitrogen molecule. In this scheme, an attosecond x-ray pulse core-ionizes the nitrogen molecule and a subsequent attosecond x-ray pulse probes the evolution of the electron dynamics. We can image the oscillation of the core-hole between the two atomic sites by measuring the angular correlation between photoelectrons. Analytical relations for the angular correlation are derived based on the plane-wave approximation for the photoelectron wave function. We validate these results with a scattering calculation for t…
Cold molecules provide an excellent platform for quantum information, cold chemistry, and precision measurement. Certain molecules have enhanced sensitivity to beyond Standard Model physics, such as the electron's electric dipole moment ($e$EDM). Molecular ions are easily trappable and are therefore particularly attractive for precision measurements where sensitivity scales with interrogation time. Here, we demonstrate a spin precession measurement with second-scale coherence at the quantum projection noise (QPN) limit with hundreds of trapped molecular ions, chosen for their sensitivity to th…
We present the use of the recently developed Square Gradient Minimization (SGM) algorithm for excited state orbital optimization, to obtain spin-pure Restricted Open-Shell Kohn-Sham (ROKS) energies for core excited states of molecules. The SGM algorithm is robust against variational collapse, and offers a reliable route to converging orbitals for target excited states at only 2-3 times the cost of ground state orbital optimization (per iteration). ROKS/SGM with the modern SCAN/$ω$B97X-V functionals is found to predict the K edge of C,N,O and F to a root mean squared error of $\sim$0.3 eV. ROKS…
The YbF molecule is a sensitive system for measuring the electron's electric dipole moment. The precision of this measurement can be improved by direct laser cooling of the molecules to ultracold temperature. However, low-lying electronic states arising from excitation of a 4f electron may hinder laser cooling. One set of these "4f hole" states lies below the $A^2Π_{1/2}$ excited state used for laser cooling, and radiative decay to these intermediate levels, even with branching ratios as small as $10^{-5}$, can be a hindrance. Other 4f hole states lie very close to the $A^2Π_{1/2}$ state, and …
The predominant reason for the damaging power of high-energy radiation is multiple ionization of a molecule, either direct or via the decay of highly excited intermediates, as e.g., in the case of X-ray irradiation. Consequently, the molecule is irreparably damaged by the subsequent fragmentation in a Coulomb explosion. In an aqueous environment, however, it has been observed that irradiated molecules may be saved from fragmentation presumably by charge and energy dissipation mechanisms. Here, we show that the protective effect of the environment sets in even earlier than hitherto expected, na…
K+(aq) ion is an integral component of many cellular processes, amongst which the most important, perhaps, is its role in transmitting electrical impulses along the nerve. Understanding its hydration structure and thermodynamics is crucial in dissecting its role in such processes. Her we address these questions using both the statistical mechanical quasi-chemical theory of solutions and ab initio molecular dynamics simulations. Simulations predict an interesting hydration structure for K+(aq): the population of about six (6) water molecules within the initial minimum of the observed g_{KO}(r) …
Rotation of molecules embedded in He nanodroplets is explored by a combination of fs laser-induced alignment experiments and angulon quasiparticle theory. We demonstrate that at low fluence of the fs alignment pulse, the molecule and its solvation shell can be set into coherent collective rotation lasting long enough to form revivals. With increasing fluence, however, the revivals disappear -- instead, rotational dynamics as rapid as for an isolated molecule is observed during the first few picoseconds. Classical calculations trace this phenomenon to transient decoupling of the molecule from i…
Hydrophobic solutes significantly alters water hydrogen bond network. The local alteration of solvation struc-tures get reflected in the vibrational spectroscopic signal. Although it is possible to detect this microscopicfeatures by modern infrared spectroscopy, however, bulk phase spectra often comes with formidable challengeof establishing the connection among the experimental spectra to molecular structures. Theoretical spec-troscopy can serve as more powerful tool even where spectroscopic data cannot provide microscopic picture.In the present work, we build a theoretical spectroscopic map …
Aiming at completing the sets of FCI-quality transition energies that we recently developed (\textit{J.~Chem.~Theory Comput.} \textbf{14} (2018) 4360--4379, \textit{ibid.}~\textbf{15} (2019) 1939--1956, and \textit{ibid.}~\textbf{16} (2020) 1711--1741), we provide, in the present contribution, ultra-accurate vertical excitation energies for a series of "exotic" closed-shell molecules containing F, Cl, P, and Si atoms and small radicals, such as CON and its variants, that were not considered to date in such investigations. This represents a total of 81 high-quality transitions obtained with a s…
Classical molecular dynamics (MD) simulations and quantum chemical density functional theory (DFT) calculations have been employed in the present study to investigate the solvation of lithium cations in pure organic carbonate solvents (ethylene carbonate (EC), propylene carbonate (PC) and dimethyl carbonate (DMC)) and their binary (EC-DMC, 1:1 molar composition) and ternary (EC-DMC-PC, 1:1:3 molar composition) mixtures. The results obtained by both methods indicate that the formation of complexes with four solvent molecules around Li+, exhibiting a strong local tetrahedral order, is the most f…
We investigate the effects of inhomogeneities on spin entanglement in many-electron systems from an ab-initio approach. The key quantity in our approach is the local spin entanglement length, which is derived from the local concurrence of the electronic system. Although the concurrence for an interacting systems is a highly nonlocal functional of the density, it does have a simple, albeit approximate expression in terms of Kohn-Sham orbitals. We show that the electron localization function -- well known in quantum chemistry as a descriptor of atomic shells and molecular bonds -- can be reinter…
Most large molecules are chiral in their structure: they exist as two enantiomers, which are mirror images of each other. Whereas the rovibronic sublevels of two enantiomers are almost identical, it turns out that the photoelectric effect is sensitive to the absolute configuration of the ionized enantiomer - an effect termed Photoelectron Circular Dichroism (PECD). Our comprehensive study demonstrates that the origin of PECD can be found in the molecular frame electron emission pattern connecting PECD to other fundamental photophysical effects as the circular dichroism in angular distributions…
Resonances in ultracold collisions involving heavy molecules are difficult to understand, and have proven challenging to detect. Here we report the observation of magnetically tunable Feshbach resonances in ultracold collisions between $^{23}$Na$^{40}$K molecules in the rovibrational ground state and $^{40}$K atoms. We prepare the atoms and molecules in various hyperfine levels of their ground states and observe the loss of molecules as a function of the magnetic field. The atom-molecule Feshbach resonances are identified by observing an enhancement of the loss rate coefficients. We have obser…
The $GW$ approximation to many-body perturbation theory is a reliable tool for describing charged electronic excitations, and it has been successfully applied to a wide range of extended systems for several decades using a plane-wave basis. However, the $GW$ approximation has been used to test limited spectral properties of a limited set of finite systems (e.g. frontier orbital energies of closed-shell $sp$ molecules) only for about a decade using a local-orbital basis. Here, we calculate the quasiparticle spectra of closed- and open-shell molecular anions with partially and completely filled …
Using one-range addition theorems for noninteger n Slater type orbitals and Coulomb-Yukawa like correlated interaction potentials with noninteger indices obtained by the author with the help of complete orthonormal sets of exponential type orbitals, the series of expansion formulas are established for the potential produced by molecule, and the potential energy of interaction between molecules through the radius vectors of nuclei of molecules, and the linear combination coefficients of molecular orbitals. The formulae obtained are useful especially for the study of interaction between atomic-m…
