University of Michigan - Shanghai Jiao Tong University Joint Institute（密歇根大学-上海交通大学联合学院）；Shanghai Jiao Tong University（上海交通大学）；University of Hawai’i at Manoa（夏威夷大学马诺阿分校）
Siqi Ye, Yong Long, Il Yong Chun
备注：
Five pages conference paper. Accepted by 2020 Asilomar Conference on Signals, Systems, and Computers
This paper applies the recent fast iterative neural network framework, Momentum-Net, using appropriate models to low-dose X-ray computed tomography (LDCT) image reconstruction. At each layer of the proposed Momentum-Net, the model-based image reconstruction module solves the majorized penalized weighted least-square problem, and the image refining module uses a four-layer convolutional neural network (CNN). Experimental results with the NIH AAPM-Mayo Clinic Low Dose CT Grand Challenge dataset show that the proposed Momentum-Net architecture significantly improves image reconstruction accuracy, compared to a state-of-the-art noniterative image denoising deep neural network (NN), WavResNet (in LDCT). We also investigated the spectral normalization technique that applies to image refining NN learning to satisfy the nonexpansive NN property; however, experimental results show that this does not improve the image reconstruction performance of Momentum-Net.
Deep Learning approaches for solving Inverse Problems in imaging have become very effective and are demonstrated to be quite competitive in the field. Comparing these approaches is a challenging task since they highly rely on the data and the setup that is used for training. We provide a public dataset of computed tomography images and simulated low-dose measurements suitable for training this kind of methods. With the LoDoPaB-CT Dataset we aim to create a benchmark that allows for a fair comparison. It contains over 40,000 scan slices from around 800 patients selected from the LIDC/IDRI Datab…
University of Michigan - Shanghai Jiao Tong University Joint Institute, Shanghai Jiao Tong University（密歇根大学-上海交通大学联合学院，上海交通大学）；Michigan State University（密歇根州立大学）
Signal models based on sparse representations have received considerable attention in recent years. On the other hand, deep models consisting of a cascade of functional layers, commonly known as deep neural networks, have been highly successful for the task of object classification and have been recently introduced to image reconstruction. In this work, we develop a new image reconstruction approach based on a novel multi-layer model learned in an unsupervised manner by combining both sparse representations and deep models. The proposed framework extends the classical sparsifying transform mod…
University of Michigan - Shanghai Jiao Tong University Joint Institute, Shanghai Jiao Tong University（上海交通大学密西根学院）；Michigan State University（密歇根州立大学）
Achieving high-quality reconstructions from low-dose computed tomography (LDCT) measurements is of much importance in clinical settings. Model-based image reconstruction methods have been proven to be effective in removing artifacts in LDCT. In this work, we propose an approach to learn a rich two-layer clustering-based sparsifying transform model (MCST2), where image patches and their subsequent feature maps (filter residuals) are clustered into groups with different learned sparsifying filters per group. We investigate a penalized weighted least squares (PWLS) approach for LDCT reconstructio…
Rensselaer Polytechnic Institute（伦斯勒理工学院）；Massachusetts General Hospital（麻省总医院）；Harvard Medical School（哈佛医学院）；University of Massachusetts Lowell（马萨诸塞大学洛厄尔分校）
By the ALARA (As Low As Reasonably Achievable) principle, ultra-low-dose CT reconstruction is a holy grail to minimize cancer risks and genetic damages, especially for children. With the development of medical CT technologies, the iterative algorithms are widely used to reconstruct decent CT images from a low-dose scan. Recently, artificial intelligence (AI) techniques have shown a great promise in further reducing CT radiation dose to the next level. In this paper, we demonstrate that AI-powered CT reconstruction offers diagnostic image quality at an ultra-low-dose level comparable to that of…
Synchrotron-based X-ray computed tomography is widely used for investigating inner structures of specimens at high spatial resolutions. However, potential beam damage to samples often limits the X-ray exposure during tomography experiments. Proposed strategies for eliminating beam damage also decrease reconstruction quality. Here we present a deep learning-based method to enhance low-dose tomography reconstruction via a hybrid-dose acquisition strategy composed of extremely sparse-view normal-dose projections and full-view low-dose projections. Corresponding image pairs are extracted from low-…
Image reconstruction from computed tomography (CT) measurement is a challenging statistical inverse problem since a high-dimensional conditional distribution needs to be estimated. Based on training data obtained from high-quality reconstructions, we aim to learn a conditional density of images from noisy low-dose CT measurements. To tackle this problem, we propose a hybrid conditional normalizing flow, which integrates the physical model by using the filtered back-projection as conditioner. We evaluate our approach on a low-dose CT benchmark and demonstrate superior performance in terms of st…
Zhejiang University（浙江大学）；Binjiang Institute of Zhejiang University（浙江大学滨江研究院）；Hangzhou Universal Medical Imaging Diagnostic Center（杭州全景医学影像诊断中心）
18F-fluorodeoxyglucose (18F-FDG) Positron Emission Tomography (PET) imaging usually needs a full-dose radioactive tracer to obtain satisfactory diagnostic results, which raises concerns about the potential health risks of radiation exposure, especially for pediatric patients. Reconstructing the low-dose PET (L-PET) images to the high-quality full-dose PET (F-PET) ones is an effective way that both reduces the radiation exposure and remains diagnostic accuracy. In this paper, we propose a resource-efficient deep learning framework for L-PET reconstruction and analysis, referred to as transGAN-S…
Low-dose CT image reconstruction has been a popular research topic in recent years. A typical reconstruction method based on post-log measurements is called penalized weighted-least squares (PWLS). Due to the underlying limitations of the post-log statistical model, the PWLS reconstruction quality is often degraded in low-dose scans. This paper investigates a shifted-Poisson (SP) model based likelihood function that uses the pre-log raw measurements that better represents the measurement statistics, together with a data-driven regularizer exploiting a Union of Learned TRAnsforms (SPULTRA). Bot…
University of Michigan（密歇根大学）；University of Michigan - Shanghai Jiao Tong University Joint Institute（上海交通大学密西根学院）；Shanghai Jiao Tong University（上海交通大学）
Obtaining accurate and reliable images from low-dose computed tomography (CT) is challenging. Regression convolutional neural network (CNN) models that are learned from training data are increasingly gaining attention in low-dose CT reconstruction. This paper modifies the architecture of an iterative regression CNN, BCD-Net, for fast, stable, and accurate low-dose CT reconstruction, and presents the convergence property of the modified BCD-Net. Numerical results with phantom data show that applying faster numerical solvers to model-based image reconstruction (MBIR) modules of BCD-Net leads to …
Low Dose Computed Tomography suffers from a high amount of noise and/or undersampling artefacts in the reconstructed image. In the current article, a Deep Learning technique is exploited as a regularization term for the iterative reconstruction method SIRT. While SIRT minimizes the error in the sinogram space, the proposed regularization model additionally steers intermediate SIRT reconstructions towards the desired output. Extensive evaluations demonstrate the superior outcomes of the proposed method compared to the state of the art techniques. Comparing the forward projection of the reconstr…
Two-Phase Multi-Dose-Level PET Image Reconstruction with Dose Level Awareness
School of Computer Science, Sichuan University（四川大学计算机学院）；School of Biomedical Engineering & State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University（上海科技大学生物医学工程学院 & 先进医学材料与器件国家重点实验室）；Shanghai United Imaging Intelligence Co., Ltd.（上海联影智能医疗科技有限公司）
Enhancing Low-dose CT Image Reconstruction by Integrating Supervised and Unsupervised Learning
University of Michigan Shanghai Jiao Tong University Joint Institute（密歇根大学上海交通大学联合学院）；Shanghai Jiao Tong University（上海交通大学）；Amazon Inc.（亚马逊公司）；Michigan State University（密歇根州立大学）
Shanghai Jiao Tong University（上海交通大学）；Michigan State University（密歇根州立大学）
Signal models based on sparse representation have received considerable attention in recent years. Compared to synthesis dictionary learning, sparsifying transform learning involves highly efficient sparse coding and operator update steps. In this work, we propose a Multi-layer Residual Sparsifying Transform (MRST) learning model wherein the transform domain residuals are jointly sparsified over layers. In particular, the transforms for the deeper layers exploit the more intricate properties of the residual maps. We investigate the application of the learned MRST model for low-dose CT reconstr…
Dose reduction in computed tomography (CT) is essential for decreasing radiation risk in clinical applications. Iterative reconstruction is one of the most promising ways to compensate for the increased noise due to reduction of photon flux. Rather than most existing prior-driven algorithms that benefit from manually designed prior functions or supervised learning schemes, in this work we integrate the data-consistency as a conditional term into the iterative generative model for low-dose CT. At the stage of prior learning, the gradient of data density is directly learned from normal-dose CT i…
University of Florida（佛罗里达大学）；Sichuan University（四川大学）；Georgia State University（佐治亚州立大学）
We propose a provably convergent method, called Efficient Learned Descent Algorithm (ELDA), for low-dose CT (LDCT) reconstruction. ELDA is a highly interpretable neural network architecture with learned parameters and meanwhile retains convergence guarantee as classical optimization algorithms. To improve reconstruction quality, the proposed ELDA also employs a new non-local feature mapping and an associated regularizer. We compare ELDA with several state-of-the-art deep image methods, such as RED-CNN and Learned Primal-Dual, on a set of LDCT reconstruction problems. Numerical experiments demo…
Self-Supervised Training For Low Dose CT Reconstruction
Electronics and Communication Engineering Department, Istanbul Technical University, Istanbul, Turkey（电子与通信工程系，伊斯坦布尔技术大学）；Electrical and Electronics Engineering Department, Istanbul University, Istanbul, Turkey（电气与电子工程系，伊斯坦布尔大学）
Traditional model-based image reconstruction (MBIR) methods combine forward and noise models with simple object priors. Recent application of deep learning methods for image reconstruction provides a successful data-driven approach to addressing the challenges when reconstructing images with measurement undersampling or various types of noise. In this work, we propose a hybrid supervised-unsupervised learning framework for X-ray computed tomography (CT) image reconstruction. The proposed learning formulation leverages both sparsity or unsupervised learning-based priors and neural network recon…
Low dose X-ray computed tomography (LDCT) is desirable for reduced patient dose. This work develops image reconstruction methods with deep learning (DL) regularization for LDCT. Our methods are based on unrolling of proximal forward-backward splitting (PFBS) framework with data-driven image regularization via deep neural networks. In contrast with PFBS-IR that utilizes standard data fidelity updates via iterative reconstruction (IR) method, PFBS-AIR involves preconditioned data fidelity updates that fuse analytical reconstruction (AR) method and IR in a synergistic way, I.e. fused analytical a…
The University of Tokyo Hospital（东京大学医学部附属医院）；Center for Frontier Medical Engineering, Chiba University（千叶大学前沿医疗工程中心）；Division of Radiology and Biomedical Engineering, Graduate School of Medicine, The University of Tokyo（东京大学医学研究生院放射科与生物医学工程学系）
Ultra sparse-view computed tomography (CT) algorithms can reduce radiation exposure of patients, but those algorithms lack an explicit cycle consistency loss minimization and an explicit log-likelihood maximization in testing. Here, we propose X2CT-FLOW for the maximum a posteriori (MAP) reconstruction of a three-dimensional (3D) chest CT image from a single or a few two-dimensional (2D) projection images using a progressive flow-based deep generative model, especially for ultra low-dose protocols. The MAP reconstruction can simultaneously optimize the cycle consistency loss and the log-likeli…
Shanghai Jiao Tong University（上海交通大学）；National University of Singapore（新加坡国立大学）；South China University of Technology（华南理工大学）
Low-dose CT (LDCT) imaging attracted a considerable interest for the reduction of the object's exposure to X-ray radiation. In recent years, supervised deep learning (DL) has been extensively studied for LDCT image reconstruction, which trains a network over a dataset containing many pairs of normal-dose and low-dose images. However, the challenge on collecting many such pairs in the clinical setup limits the application of such supervised-learning-based methods for LDCT image reconstruction in practice. Aiming at addressing the challenges raised by the collection of training dataset, this pap…
Recent years have witnessed growing interest in machine learning-based models and techniques for low-dose X-ray CT (LDCT) imaging tasks. The methods can typically be categorized into supervised learning methods and unsupervised or model-based learning methods. Supervised learning methods have recently shown success in image restoration tasks. However, they often rely on large training sets. Model-based learning methods such as dictionary or transform learning do not require large or paired training sets and often have good generalization properties, since they learn general properties of CT im…
Harbin Institute of Technology（哈尔滨工业大学）；The Second Affiliated Hospital of Harbin Medical University（哈尔滨医科大学附属第二医院）
Low-dose computed tomography (CT) allows the reduction of radiation risk in clinical applications at the expense of image quality, which deteriorates the diagnosis accuracy of radiologists. In this work, we present a High-Quality Imaging network (HQINet) for the CT image reconstruction from Low-dose computed tomography (CT) acquisitions. HQINet was a convolutional encoder-decoder architecture, where the encoder was used to extract spatial and temporal information from three contiguous slices while the decoder was used to recover the spacial information of the middle slice. We provide experimen…
Friedrich-Alexander-University Erlangen-Nuremberg（弗里德里希-亚历山大-埃尔兰根-纽伦堡大学）；German Cancer Research Center（德国癌症研究中心）
In computed tomography (CT), automatic exposure control (AEC) is frequently used to reduce radiation dose exposure to patients. For organ-specific AEC, a preliminary CT reconstruction is necessary to estimate organ shapes for dose optimization, where only a few projections are allowed for real-time reconstruction. In this work, we investigate the performance of automated transform by manifold approximation (AUTOMAP) in such applications. For proof of concept, we investigate its performance on the MNIST dataset first, where the dataset containing all the 10 digits are randomly split into a trai…
Technical University of Munich（慕尼黑工业大学）；Istanbul Technical University（伊斯坦布尔理工大学）
In this paper, we introduced a novel deep learning-based reconstruction technique for low-dose CT imaging using 3 dimensional convolutions to include the sagittal information unlike the existing 2 dimensional networks which exploits correlation only in transverse plane. In the proposed reconstruction technique, sparse and noisy sinograms are back-projected to the image domain with FBP operation, then the denoising process is applied with a U-Net like 3-dimensional network called 3D U-NetR. The proposed network is trained with synthetic and real chest CT images, and 2D U-Net is also trained wit…
Deep learning reconstruction of digital breast tomosynthesis images for accurate breast density and patient-specific radiation dose estimation
Radboud University Medical Center（拉德堡德大学医学中心）；Netherlands Cancer Institute（荷兰癌症研究所）；The University of Chicago（芝加哥大学）；University of Pennsylvania（宾夕法尼亚大学）；Lund University（隆德大学）；Vall d’Hebron Institute of Oncology（巴尔德希伯伦肿瘤研究所）；University of Barcelona（巴塞罗那大学）；Dutch Expert Centre for Screening (LRCB)（荷兰筛查专家中心）
Low-dose CT (LDCT) imaging is desirable in many clinical applications to reduce X-ray radiation dose to patients. Inspired by deep learning (DL), a recent promising direction of model-based iterative reconstruction (MBIR) methods for LDCT is via optimization-unrolling DL-regularized image reconstruction, where pre-defined image prior is replaced by learnable data-adaptive prior. However, LDCT is clinically multilevel, since clinical scans have different noise levels that depend of scanning site, patient size, and clinical task. Therefore, this work aims to develop an adaptive-hyper-parameter D…
End-to-end Triple-domain PET Enhancement: A Hybrid Denoising-and-reconstruction Framework for Reconstructing Standard-dose PET Images from Low-dose PET Sinograms
ShanghaiTech University（上海科技大学）；Shanghai United Imaging Intelligence Co., Ltd.（上海联影智能医疗科技有限公司）；Shanghai Clinical Research and Trial Center（上海临床研究与试验中心）；Shanghai Artificial Intelligence Laboratory（上海人工智能实验室）
提出端到端三域 TriPLET 框架，融合投影域去噪、小波域重建和图像域对抗评估，从低剂量 PET 正弦图恢复标准剂量图像，并取得最优相似度与信噪比。
The Ohio State University College of Medicine（俄亥俄州立大学医学院）
Consistency and duplicability in Computed Tomography (CT) output is essential to quantitative imaging for lung cancer detection and monitoring. This study of CT-detected lung nodules investigated the reproducibility of volume-, density-, and texture-based features (outcome variables) over routine ranges of radiation-dose, reconstruction kernel, and slice thickness. CT raw data of 23 nodules were reconstructed using 320 acquisition/reconstruction conditions (combinations of 4 doses, 10 kernels, and 8 thicknesses). Scans at 12.5%, 25%, and 50% of protocol dose were simulated; reduced-dose and fu…
Department of Data Science and Analytics, Istanbul Technical University（数据科学与分析系，伊斯坦布尔技术大学）；Department of Electronics and Communication Engineering, Istanbul Technical University（电子与通信工程系，伊斯坦布尔技术大学）
Noise-Inspired Diffusion Model for Generalizable Low-Dose CT Reconstruction
Institute of Science and Technology for Brain-inspired Intelligence（脑启发智能科学与技术研究院）；Fudan University（复旦大学）；School of Biomedical Engineering（生物医学工程学院）；Southern Medical University（南方医科大学）；School of Computer Science（计算机科学学院）；Xi’an Jiaotong University（西安交通大学）；School of Life Science and Technology（生命科学与技术学院）；MOE Frontiers Center for Brain Science（教育部脑科学前沿中心）；Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Ministry of Education)（教育部计算神经科学与脑启发智能重点实验室）；State Key Laboratory of Brain Function and Disorders（脑功能与疾病国家重点实验室）
In the intention of minimizing excessive X-ray radiation administration to patients, low-dose computed tomography (LDCT) has become a distinct trend in radiology. However, while lowering the radiation dose reduces the risk to the patient, it also increases noise and artifacts, compromising image quality and clinical diagnosis. In most supervised learning methods, paired CT images are required, but such images are unlikely to be available in the clinic. We present a self-supervised learning model (Noise2Projection) that fully exploits the raw projection images to reduce noise and improve the qu…
Low-dose computed tomography (LDCT) scans, which can effectively alleviate the radiation problem, will degrade the imaging quality. In this paper, we propose a novel LDCT reconstruction network that unrolls the iterative scheme and performs in both image and manifold spaces. Because patch manifolds of medical images have low-dimensional structures, we can build graphs from the manifolds. Then, we simultaneously leverage the spatial convolution to extract the local pixel-level features from the images and incorporate the graph convolution to analyze the nonlocal topological features in manifold…
Synchrotron radiation sources are widely used in various fields, among which computed tomography (CT) is one of the most important. The amount of effort expended by the operator varies depending on the subject. If the number of angles needed to be used can be greatly reduced under the condition of similar imaging effects, the working time and workload of the experimentalists will be greatly reduced. However, decreasing the sampling angle can produce serious artifacts and blur the details. We try to use a deep learning model which can build high quality reconstruction sparse data sampling from …
The Plug-and-Play (PnP) framework was recently introduced for low-dose CT reconstruction to leverage the interpretability and the flexibility of model-based methods to incorporate various plugins, such as trained deep learning (DL) neural networks. However, the benefits of PnP vs. state-of-the-art DL methods have not been clearly demonstrated. In this work, we proposed an improved PnP framework to address the previous limitations and develop clinical-relevant segmentation metrics for quantitative result assessment. Compared with the DL alone methods, our proposed PnP framework was slightly inf…
A Low-dose CT Reconstruction Network Based on TV-regularized OSEM Algorithm
School of Mathematical Sciences, Capital Normal University（首都师范大学数学科学学院）；Centre for Mathematical Imaging Techniques, University of Liverpool（利物浦大学数学成像技术中心）；Academy of Mathematics and Systems Science, Chinese Academy of Sciences（中国科学院数学与系统科学研究院）；Department of Mathematics and Statistics, University of Strathclyde（思克莱德大学数学与统计系）
Low dose CT is of great interest in these days. Dose reduction raises noise level in projections and decrease image quality in reconstructions. Model based image reconstruction can combine statistical noise model together with prior knowledge into an Bayesian optimization problem so that significantly reduce noise and artefacts. In this work, we propose a model-base deep learning for CT reconstruction so that a reconstruction network can be trained with no ground-truth images needed. Instead of minimizing cost function for each image, the network learns to minimize an ensemble cost function fo…
Computed Tomography (CT) takes X-ray measurements on the subjects to reconstruct tomographic images. As X-ray is radioactive, it is desirable to control the total amount of dose of X-ray for safety concerns. Therefore, we can only select a limited number of measurement angles and assign each of them limited amount of dose. Traditional methods such as compressed sensing usually randomly select the angles and equally distribute the allowed dose on them. In most CT reconstruction models, the emphasize is on designing effective image representations, while much less emphasize is on improving the s…
Shanghai Jiao Tong University（上海交通大学）；Michigan State University（密歇根州立大学）
The recently proposed sparsifying transform models incur low computational cost and have been applied to medical imaging. Meanwhile, deep models with nested network structure reveal great potential for learning features in different layers. In this study, we propose a network-structured sparsifying transform learning approach for X-ray computed tomography (CT), which we refer to as multi-layer clustering-based residual sparsifying transform (MCST) learning. The proposed MCST scheme learns multiple different unitary transforms in each layer by dividing each layer's input into several classes. W…
Samsung Medical Center（三星医疗中心）；Sungkyunkwan University School of Medicine（成均馆大学医学院）；Sungkyunkwan University（成均馆大学）
Computer-aided diagnosis for low-dose computed tomography (CT) based on deep learning has recently attracted attention as a first-line automatic testing tool because of its high accuracy and low radiation exposure. However, existing methods rely on supervised learning, imposing an additional burden to doctors for collecting disease data or annotating spatial labels for network training, consequently hindering their implementation. We propose a method based on a deep neural network for computer-aided diagnosis called virtual multi-view projection and reconstruction for unsupervised anomaly dete…
Unsupervised Low-dose CT Reconstruction with One-way Conditional Normalizing Flows
School of Mathematical Sciences, Capital Normal University（首都师范大学数学学院）；Centre for Mathematical Imaging Techniques, University of Liverpool（利物浦大学数学成像技术中心）；Department of Mathematics and Statistics, University of Strathclyde（斯特拉思克莱德大学数学与统计学系）
Sichuan University（四川大学）；Fudan University（复旦大学）；Shanghai Center for Brain Science and Brain-Inspired Technology（上海脑科学与类脑研究中心）；Rensselaer Polytechnic Institute（伦斯勒理工学院）
Since 2016, deep learning (DL) has advanced tomographic imaging with remarkable successes, especially in low-dose computed tomography (LDCT) imaging. Despite being driven by big data, the LDCT denoising and pure end-to-end reconstruction networks often suffer from the black box nature and major issues such as instabilities, which is a major barrier to apply deep learning methods in low-dose CT applications. An emerging trend is to integrate imaging physics and model into deep networks, enabling a hybridization of physics/model-based and data-driven elements. %This type of hybrid methods has be…
