On the Benefit of Dual-domain Denoising in a Self-supervised Low-dose CT Setting
FAU Erlangen-Nürnberg（埃尔朗根-纽伦堡大学）；Fraunhofer Institute for Ceramic Technologies and Systems IKTS（弗劳恩霍夫陶瓷技术与系统研究所 IKTS）
Fabian Wagner, Mareike Thies, Laura Pfaff, Oliver Aust, Sabrina Pechmann, Daniela Weidner, Noah Maul, Maximilian Rohleder, Mingxuan Gu, Jonas Utz, Felix Denzinger, Andreas Maier
备注：
This work has been submitted to the IEEE for possible publication
Computed tomography (CT) is routinely used for three-dimensional non-invasive imaging. Numerous data-driven image denoising algorithms were proposed to restore image quality in low-dose acquisitions. However, considerably less research investigates methods already intervening in the raw detector data due to limited access to suitable projection data or correct reconstruction algorithms. In this work, we present an end-to-end trainable CT reconstruction pipeline that contains denoising operators in both the projection and the image domain and that are optimized simultaneously without requiring ground-truth high-dose CT data. Our experiments demonstrate that including an additional projection denoising operator improved the overall denoising performance by 82.4-94.1%/12.5-41.7% (PSNR/SSIM) on abdomen CT and 1.5-2.9%/0.4-0.5% (PSNR/SSIM) on XRM data relative to the low-dose baseline. We make our entire helical CT reconstruction framework publicly available that contains a raw projection rebinning step to render helical projection data suitable for differentiable fan-beam reconstruction operators and end-to-end learning.
The extensive use of medical CT has raised a public concern over the radiation dose to the patient. Reducing the radiation dose leads to increased CT image noise and artifacts, which can adversely affect not only the radiologists judgement but also the performance of downstream medical image analysis tasks. Various low-dose CT denoising methods, especially the recent deep learning based approaches, have produced impressive results. However, the existing denoising methods are all downstream-task-agnostic and neglect the diverse needs of the downstream applications. In this paper, we introduce a…
Low dose computed tomography is a mainstream for clinical applications. How-ever, compared to normal dose CT, in the low dose CT (LDCT) images, there are stronger noise and more artifacts which are obstacles for practical applications. In the last few years, convolution-based end-to-end deep learning methods have been widely used for LDCT image denoising. Recently, transformer has shown superior performance over convolution with more feature interactions. Yet its ap-plications in LDCT denoising have not been fully cultivated. Here, we propose a convolution-free T2T vision transformer-based Enc…
WIA-LD2ND: Wavelet-based Image Alignment for Self-supervised Low-Dose CT Denoising
School of Computer Science, Wuhan University（武汉大学计算机学院）；School of Computer Science, Central China Normal University（华中师范大学计算机学院）；University of Louisville（路易斯维尔大学）
Saratoga High School（萨拉托加高中）；Stanford University（斯坦福大学）
CT image quality is heavily reliant on radiation dose, which causes a trade-off between radiation dose and image quality that affects the subsequent image-based diagnostic performance. However, high radiation can be harmful to both patients and operators. Several (deep learning-based) approaches have been attempted to denoise low dose images. However, those approaches require access to large training sets, specifically the full dose CT images for reference, which can often be difficult to obtain. Self-supervised learning is an emerging alternative for lowering the reference data requirement fa…
University of California Davis Medical Center（加州大学戴维斯分校医学中心）
Deep neural networks have a great potential to improve image denoising in low-dose computed tomography (LDCT). Popular ways to increase the network capacity include adding more layers or repeating a modularized clone model in a sequence. In such sequential architectures, the noisy input image and end output image are commonly used only once in the training model, which however limits the overall learning performance. In this paper, we propose a parallel-clone neural network method that utilizes a modularized network model and exploits the benefit of parallel input, parallel-output loss, and cl…
School of Statistics and Data Science, Nankai University（南开大学统计与数据科学学院）；The First Affiliated Hospital of Xi’an Jiaotong University（西安交通大学第一附属医院）；Shanxi Engineering Research Center of Computational Imaging and Medical Intelligence（山西省计算成像与医学智能工程研究中心）
PFCM: Poisson flow consistency models for low-dose CT image denoising
Stanford University（斯坦福大学）；KTH Royal Institute of Technology（瑞典皇家理工学院）；Karolinska University Hospital（卡罗林斯卡大学医院）；GE HealthCare（GE医疗）；Rensselaer Polytechnic Institute（伦斯勒理工学院）
Cycle-Constrained Adversarial Denoising Convolutional Network for PET Image Denoising: Multi-Dimensional Validation on Large Datasets with Reader Study and Real Low-Dose Data
Recently, Self-supervised learning methods able to perform image denoising without ground truth labels have been proposed. These methods create low-quality images by adding random or Gaussian noise to images and then train a model for denoising. Ideally, it would be beneficial if one can generate high-quality CT images with only a few training samples via self-supervision. However, the performance of CT denoising is generally limited due to the complexity of CT noise. To address this problem, we propose a novel self-supervised learning-based CT denoising method. In particular, we train pre-tra…
Gordon Center for Medical Imaging, Massachusetts General Hospital and Harvard Medical School（马萨诸塞州总医院与哈佛医学院戈登医学影像中心）
Image denoising techniques are essential to reducing noise levels and enhancing diagnosis reliability in low-dose computed tomography (CT). Machine learning based denoising methods have shown great potential in removing the complex and spatial-variant noises in CT images. However, some residue artifacts would appear in the denoised image due to complexity of noises. A cascaded training network was proposed in this work, where the trained CNN was applied on the training dataset to initiate new trainings and remove artifacts induced by denoising. A cascades of convolutional neural networks (CNN)…
Image denoising is a prerequisite for downstream tasks in many fields. Low-dose and photon-counting computed tomography (CT) denoising can optimize diagnostic performance at minimized radiation dose. Supervised deep denoising methods are popular but require paired clean or noisy samples that are often unavailable in practice. Limited by the independent noise assumption, current unsupervised denoising methods cannot process correlated noises as in CT images. Here we propose the first-of-its-kind similarity-based unsupervised deep denoising approach, referred to as Noise2Sim, that works in a non…
UniPET: a universal network for high-quality PET image denoising across varied dose reduction factors
School of Biological Science and Medical Engineering（生物科学与医学工程学院）；State Key Laboratory of Software Development Environment（软件开发环境国家重点实验室）；Key Laboratory of Biomechanics, Mechanobiology of Ministry of Education（教育部生物力学与机械生物学重点实验室）；Beijing Advanced Innovation Centre for Biomedical Engineering, Beihang University（北京生物医学工程先进创新中心，北航）；Department of Biomedical Engineering（生物医学工程系）；Department of Gynecology Oncology（妇科肿瘤科）；National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital（国家癌症中心/国家癌症临床研究中心/癌症医院）；Chinese Academy of Medical Sciences（中国医学科学院）；Peking Union Medical College（北京协和医学院）；Xiaomi Corporation（小米公司）
Center for Advanced Medical Computing and Analysis（高级医学计算与分析中心）；Gordon Center for Medical Imaging（戈登医学成像中心）；Massachusetts General Hospital（麻省总医院）；Harvard Medical School（哈佛医学院）
Dynamic computed tomography perfusion (CTP) imaging is a promising approach for acute ischemic stroke diagnosis and evaluation. Hemodynamic parametric maps of cerebral parenchyma are calculated from repeated CT scans of the first pass of iodinated contrast through the brain. It is necessary to reduce the dose of CTP for routine applications due to the high radiation exposure from the repeated scans, where image denoising is necessary to achieve a reliable diagnosis. In this paper, we proposed a self-supervised deep learning method for CTP denoising, which did not require any high-dose referenc…
Filter2Noise: A Framework for Interpretable and Zero-Shot Low-Dose CT Image Denoising
Pattern Recognition Lab, Friedrich-Alexander-University Erlangen-Nuremberg（模式识别实验室，弗里德里希-亚历山大大学埃尔朗根-纽伦堡）；Siemens Healthineers AG（西门子医疗影像有限公司）；Department of Radiology, State Key Laboratory of Complex Severe and Rare Diseases, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College（放射科，复杂严重罕见疾病国家重点实验室，北京协和医院，中国医学科学院及北京协和医学院）；Theranostics and Translational Research Center, National Infrastructures for Translational Medicine, Institute of Clinical Medicine, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College（诊疗与转化研究中心，国家转化医学基础设施，临床医学研究院，北京协和医院，中国医学科学院及北京协和医学院）
PPFM: Image denoising in photon-counting CT using single-step posterior sampling Poisson flow generative models
KTH Royal Institute of Technology（皇家理工学院）；Karolinska University Hospital（卡罗林斯卡大学医院）；University of Wisconsin School of Medicine and Public Health（威斯康星大学麦迪逊分校医学与公共卫生学院）；GE HealthCare（GE医疗）；Rensselaer Polytechnic Institute（伦斯勒理工学院）
Rensselaer Polytechnic Institute（伦斯勒理工学院）；Philips Research North America（飞利浦北美研究院）；Massachusetts General Hospital（麻省总医院）；Harvard Medical School（哈佛医学院）
Increasing use of CT in modern medical practice has raised concerns over associated radiation dose. Reduction of radiation dose associated with CT can increase noise and artifacts, which can adversely affect diagnostic confidence. Denoising of low-dose CT images on the other hand can help improve diagnostic confidence, which however is a challenging problem due to its ill-posed nature, since one noisy image patch may correspond to many different output patches. In the past decade, machine learning based approaches have made quite impressive progress in this direction. However, most of those me…
A Convex Functional for Image Denoising based on Patches with Constrained Overlaps and its vectorial application to Low Dose Differential Phase Tomography
the Ludwig Maximilians University, Physics Departement, 85748 Garching, Germany（慕尼黑大学物理系）；Ludwig Maximilians University, Departement of Clinical Radiology,80336 Munich, Germany（慕尼黑大学临床放射学系）
Sungkyunkwan University（成均馆大学）；Ulsan National Institute of Science and Technology（蔚山科学技术院）；Shanghai Jiao Tong University（上海交通大学）；Seoul National University（首尔国立大学）
Regression that predicts continuous quantity is a central part of applications using computational imaging and computer vision technologies. Yet, studying and understanding self-supervised learning for regression tasks - except for a particular regression task, image denoising - have lagged behind. This paper proposes a general self-supervised regression learning (SSRL) framework that enables learning regression neural networks with only input data (but without ground-truth target data), by using a designable pseudo-predictor that encapsulates domain knowledge of a specific application. The pa…
Birla Institute of Technology Science Pilani（比尔拉理工学院皮拉尼分校）
In this work, we present Eformer - Edge enhancement based transformer, a novel architecture that builds an encoder-decoder network using transformer blocks for medical image denoising. Non-overlapping window-based self-attention is used in the transformer block that reduces computational requirements. This work further incorporates learnable Sobel-Feldman operators to enhance edges in the image and propose an effective way to concatenate them in the intermediate layers of our architecture. The experimental analysis is conducted by comparing deterministic learning and residual learning for the …
Denoising diffusion models for high-resolution microscopy image restoration
Frankfurt Institute for Advanced Studies (FIAS)（法兰克福高级研究所）；Goethe University Frankfurt（法兰克福大学）；Institute of Physical and Theoretical Chemistry（物理与理论化学研究所）
Exploiting network optimization stability for enhanced PET image denoising using deep image prior
Central Research Laboratory, Hamamatsu Photonics K. K.（滨松光子学株式会社中央研究所）；Institute for Quantum Medical Science, National Institutes for Quantum Science and Technology (QST)（国立量子科学技术研究开发机构量子医学科学研究所）；J. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida（佛罗里达大学J. Crayton Pruitt家族生物医学工程系）
Most of the Deep Neural Networks (DNNs) based CT image denoising literature shows that DNNs outperform traditional iterative methods in terms of metrics such as the RMSE, the PSNR and the SSIM. In many instances, using the same metrics, the DNN results from low-dose inputs are also shown to be comparable to their high-dose counterparts. However, these metrics do not reveal if the DNN results preserve the visibility of subtle lesions or if they alter the CT image properties such as the noise texture. Accordingly, in this work, we seek to examine the image quality of the DNN results from a holis…
Image denoising is a typical ill-posed problem due to complex degradation. Leading methods based on normalizing flows have tried to solve this problem with an invertible transformation instead of a deterministic mapping. However, the implicit bijective mapping is not explored well. Inspired by a latent observation that noise tends to appear in the high-frequency part of the image, we propose a fully invertible denoising method that injects the idea of disentangled learning into a general invertible neural network to split noise from the high-frequency part. More specifically, we decompose the …
MDAA-Diff: CT-Guided Multi-Dose Adaptive Attention Diffusion Model for PET Denoising
School of Biomedical Engineering, Southern Medical University（南方医科大学生物医学工程学院）；School of Biomedical Engineering, Shanghai Jiao Tong University（上海交通大学生物医学工程学院）；Nanfang PET Center, Nanfang Hospital Southern Medical University（南方医科大学南芳医院PET中心）
University of Massachusetts, Lowell（马萨诸塞大学洛厄尔分校）；Weill Cornell Medicine, Cornell University（康奈尔大学威尔康奈尔医学院）
Low-dose computed tomography (LDCT) denoising is an important problem in CT research. Compared to the normal dose CT (NDCT), LDCT images are subjected to severe noise and artifacts. Recently in many studies, vision transformers have shown superior feature representation ability over convolutional neural networks (CNNs). However, unlike CNNs, the potential of vision transformers in LDCT denoising was little explored so far. To fill this gap, we propose a Convolution-free Token2Token Dilated Vision Transformer for low-dose CT denoising. The CTformer uses a more powerful token rearrangement to en…
ASCON: Anatomy-aware Supervised Contrastive Learning Framework for Low-dose CT Denoising
Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University（复旦大学类脑智能科学与技术研究院）；School of Cyber Science and Engineering, Sichuan University（四川大学网络空间安全学院）
Low-dose CT Denoising with Language-engaged Dual-space Alignment
Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University（复旦大学脑智能科学与技术研究院）；Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute（伦斯勒理工学院生物技术与跨学科研究中心）
University of Washington（华盛顿大学）；Purdue University（普渡大学）；GE Healthcare Technologies（通用电气医疗技术公司）；University of Notre Dame（圣母大学）
Markov random fields (MRFs) have been widely used as prior models in various inverse problems such as tomographic reconstruction. While MRFs provide a simple and often effective way to model the spatial dependencies in images, they suffer from the fact that parameter estimation is difficult. In practice, this means that MRFs typically have very simple structure that cannot completely capture the subtle characteristics of complex images. In this paper, we present a novel Gaussian mixture Markov random field model (GM-MRF) that can be used as a very expressive prior model for inverse problems su…
Low-Dose Computed Tomography (LDCT) technique, which reduces the radiation harm to human bodies, is now attracting increasing interest in the medical imaging field. As the image quality is degraded by low dose radiation, LDCT exams require specialized reconstruction methods or denoising algorithms. However, most of the recent effective methods overlook the inner-structure of the original projection data (sinogram) which limits their denoising ability. The inner-structure of the sinogram represents special characteristics of the data in the sinogram domain. By maintaining this structure while d…
In the past few decades, to reduce the risk of X-ray in computed tomography (CT), low-dose CT image denoising has attracted extensive attention from researchers, which has become an important research issue in the field of medical images. In recent years, with the rapid development of deep learning technology, many algorithms have emerged to apply convolutional neural networks to this task, achieving promising results. However, there are still some problems such as low denoising efficiency, over-smoothed result, etc. In this paper, we propose the Edge enhancement based Densely connected Convol…
U-TTT: Towards Generalizable PET Image Denoising via Test-Time Training
School of Biological Science and Medical Engineering, Beihang University（北京航空航天大学生物科学与医学工程学院）；Department of Biomedical Engineering, Tsinghua University（清华大学生物医学工程系）；School of Aerospace Engineering, Tsinghua University（清华大学航天航空学院）；ByteDance Inc.（字节跳动有限公司）
With the advent of advances in self-supervised learning, paired clean-noisy data are no longer required in deep learning-based image denoising. However, existing blind denoising methods still require the assumption with regard to noise characteristics, such as zero-mean noise distribution and pixel-wise noise-signal independence; this hinders wide adaptation of the method in the medical domain. On the other hand, unpaired learning can overcome limitations related to the assumption on noise characteristics, which makes it more feasible for collecting the training data in real-world scenarios. I…
Gating is commonly used in PET imaging to reduce respiratory motion blurring and facilitate more sophisticated motion correction methods. In the applications of low dose PET, however, reducing injection dose causes increased noise and reduces signal-to-noise ratio (SNR), subsequently corrupting the motion estimation/correction steps, causing inferior image quality. To tackle these issues, we first propose a Siamese adversarial network (SAN) that can efficiently recover high dose gated image volume from low dose gated image volume. To ensure the appearance consistency between the recovered gate…
University of Texas Southwestern Medical Centre（德克萨斯大学西南医学中心）
Despite the indispensable role of X-ray computed tomography (CT) in diagnostic medicine field, the associated ionizing radiation is still a major concern considering that it may cause genetic and cancerous diseases. Decreasing the exposure can reduce the dose and hence the radiation-related risk, but will also induce higher quantum noise. Supervised deep learning can be used to train a neural network to denoise the low-dose CT (LDCT). However, its success requires massive pixel-wise paired LDCT and normal-dose CT (NDCT) images, which are rarely available in real practice. To alleviate this pro…
Low-dose computed tomography (CT) denoising algorithms aim to enable reduced patient dose in routine CT acquisitions while maintaining high image quality. Recently, deep learning~(DL)-based methods were introduced, outperforming conventional denoising algorithms on this task due to their high model capacity. However, for the transition of DL-based denoising to clinical practice, these data-driven approaches must generalize robustly beyond the seen training data. We, therefore, propose a hybrid denoising approach consisting of a set of trainable joint bilateral filters (JBFs) combined with a co…
Low-dose CT has been a key diagnostic imaging modality to reduce the potential risk of radiation overdose to patient health. Despite recent advances, CNN-based approaches typically apply filters in a spatially invariant way and adopt similar pixel-level losses, which treat all regions of the CT image equally and can be inefficient when fine-grained structures coexist with non-uniformly distributed noises. To address this issue, we propose a Structure-preserving Kernel Prediction Network (StructKPN) that combines the kernel prediction network with a structure-aware loss function that utilizes t…
Low-dose Computed Tomography (LDCT) reconstruction is an important task in medical image analysis. Recent years have seen many deep learning based methods, proved to be effective in this area. However, these methods mostly follow a supervised architecture, which needs paired CT image of full dose and quarter dose, and the solution is highly dependent on specific measurements. In this work, we introduce Denoising Diffusion LDCT Model, dubbed as DDLM, generating noise-free CT image using conditioned sampling. DDLM uses pretrained model, and need no training nor tuning process, thus our proposal …
Low-dose computed tomography (LDCT) became a clear trend in radiology with an aspiration to refrain from delivering excessive X-ray radiation to the patients. The reduction of the radiation dose decreases the risks to the patients but raises the noise level, affecting the quality of the images and their ultimate diagnostic value. One mitigation option is to consider pairs of low-dose and high-dose CT projections to train a denoising model using deep learning algorithms; however, such pairs are rarely available in practice. In this paper, we present a new self-supervised method for CT denoising…
Korea Advanced Institute of Science and Technology (KAIST)（韩国科学技术院（KAIST））；VUNO Corp.（VUNO公司）；Chungnam National University College of Medicine（忠南大学医学院）；Chungnam National University Hospital（忠南大学医院）
The acquisition conditions for low-dose and high-dose CT images are usually different, so that the shifts in the CT numbers often occur. Accordingly, unsupervised deep learning-based approaches, which learn the target image distribution, often introduce CT number distortions and result in detrimental effects in diagnostic performance. To address this, here we propose a novel unsupervised learning approach for lowdose CT reconstruction using patch-wise deep metric learning. The key idea is to learn embedding space by pulling the positive pairs of image patches which shares the same anatomical s…
Low-dose computed tomography (LDCT) reduces the X-ray radiation but compromises image quality with more noises and artifacts. A plethora of transformer models have been developed recently to improve LDCT image quality. However, the success of a transformer model relies on a large amount of paired noisy and clean data, which is often unavailable in clinical applications. In computer vision and natural language processing fields, masked autoencoders (MAE) have been proposed as an effective label-free self-pretraining method for transformers, due to its excellent feature representation ability. H…
The explosive rise of the use of Computer tomography (CT) imaging in medical practice has heightened public concern over the patient's associated radiation dose. However, reducing the radiation dose leads to increased noise and artifacts, which adversely degrades the scan's interpretability. Consequently, an advanced image reconstruction algorithm to improve the diagnostic performance of low dose ct arose as the primary concern among the researchers, which is challenging due to the ill-posedness of the problem. In recent times, the deep learning-based technique has emerged as a dominant method…
End-to-end Triple-domain PET Enhancement: A Hybrid Denoising-and-reconstruction Framework for Reconstructing Standard-dose PET Images from Low-dose PET Sinograms
ShanghaiTech University（上海科技大学）；Shanghai United Imaging Intelligence Co., Ltd.（上海联影智能医疗科技有限公司）；Shanghai Clinical Research and Trial Center（上海临床研究与试验中心）；Shanghai Artificial Intelligence Laboratory（上海人工智能实验室）
提出端到端三域 TriPLET 框架，融合投影域去噪、小波域重建和图像域对抗评估，从低剂量 PET 正弦图恢复标准剂量图像，并取得最优相似度与信噪比。
