Ultrasound Computed Tomography (USCT) has great potential for 3D quantitative imaging of acoustic breast tissue properties. Typical devices include high-frequency transducers, which makes tomography techniques based on numerical wave propagation simulations computationally challenging, especially in 3D. Therefore, despite the finite-frequency nature of ultrasonic waves, ray-theoretical approaches to transmission tomography are still widely used.
This work introduces finite-frequency traveltime tomography to medical ultrasound. In addition to being computationally tractable for 3D imaging at high frequencies, the method has two main advantages: (1) It correctly accounts for the frequency dependence and volumetric sensitivity of traveltime measurements, which are related to off-ray-path scattering and diffraction. (2) It naturally enables out-of-plane imaging and the construction of 3D images from 2D slice-by-slice acquisition systems.
Our method rests on the availability of calibration data in water, used to linearize the forward problem and to provide analytical expressions of cross-correlation traveltime sensitivity. As a consequence of the finite frequency content, sensitivity is distributed in multiple Fresnel volumes, thereby providing out-of-plane sensitivity. To improve computational efficiency, we develop a memory-efficient implementation by encoding the Jacobian operator with a 1D parameterization, which allows us to extend the method to large-scale domains. We validate our tomographic approach using lab measurements collected with a 2D setup of transducers and using a cylindrically symmetric phantom. We then demonstrate its applicability for 3D reconstructions by simulating a slice-by-slice acquisition systems using the same dataset.
Ultrasound-modulated optical tomography enables sharp 3D optical imaging of tissues and other turbid media, but the light modulation signals are hard to sensitively measure. A common solution, involving photorefractive crystals, enables the measurement of a relatively slow and low-spatial-resolution signal tracking the envelope of the ultrasound wave. We reexamine the photorefractive detection principle both intuitively and quantitatively, and from this analysis we predict that the photodetector should additionally see a fast response at twice the ultrasound frequency, and correspondingly high…
A well-known diagnostic imaging modality, termed ultrasound tomography, was quickly developed for the detection of very small tumors whose sizes are smaller than the wavelength of the incident pressure wave without ionizing radiation, compared to the current gold-standard X-ray mammography. Based on inverse scattering technique, ultrasound tomography uses some material properties such as sound contrast or attenuation to detect small targets. The Distorted Born Iterative Method (DBIM) based on first-order Born approximation is an efficient diffraction tomography approach. Compressed Sensing (CS…
Ultrasound speckle is a granular texture pattern appearing in ultrasound imaging. It can be used to distinguish tissues and identify pathologies. Lorentz force electrical impedance tomography is an ultrasound-based medical imaging technique of the tissue electrical conductivity. It is based on the application of an ultrasound wave in a medium placed in a magnetic field and on the measurement of the induced electric current due to Lorentz force. Similarly to ultrasound imaging, we hypothesized that a speckle could be observed with Lorentz force electrical impedance tomography imaging. In this s…
The sensitivity of phase-sensitive detectors, such as piezoelectric detectors, becomes increasingly directional as the detector element size increases. In contrast, pyroelectric sensors, which are phase-insensitive, retain their omni-directionality even for large element sizes, although they have significantly poorer temporal resolution. This study uses numerical models to examine whether phase-insensitive detectors can be used advantageously in ultrasound tomography, specifically absorption tomography, when the number of detectors is sparse. We present measurement models for phase-sensitive a…
Advanced ultrasound computed tomography techniques like full-waveform inversion are mathematically challenging and orders of magnitude more computationally expensive than conventional ultrasound imaging methods. This computational and algorithmic complexity, and a lack of open-source libraries in this field, represent a barrier preventing the generalised adoption of these techniques, slowing the pace of research and hindering reproducibility. Consequently, we have developed Stride, an open-source Python library for the solution of large-scale ultrasound tomography problems. On one hand, Stride…
Ultrasound computed tomography (USCT) holds great promise for improving the detection and management of breast cancer. Because they are based on the acoustic wave equation, waveform inversion-based reconstruction methods can produce images that possess improved spatial resolution properties over those produced by ray-based methods. However, waveform inversion methods are computationally demanding and have not been applied widely in USCT breast imaging. In this work, source encoding concepts are employed to develop an accelerated USCT reconstruction method that circumvents the large computation…
Ultrasound-modulated optical tomography is an emerging biomedical imaging modality which uses the spatially localised acoustically-driven modulation of coherent light as a probe of the structure and optical properties of biological tissues. In this work we begin by providing an overview of forward modelling methods, before deriving a linearised diffusion-style model which calculates the first-harmonic modulated flux measured on the boundary of a given domain. We derive and examine the correlation measurement density functions of the model which describe the sensitivity of the modality to pertu…
Ultrasound modulated optical tomography (UOT) is a powerful imaging technique to discriminate healthy from unhealthy biological tissues based on their optical signature. Among the numerous detection techniques developed for acousto-optic imaging, only those based on spectral filtering are intrinsically immune to speckle decorrelation. This paper reports on UOT imaging based on spectral hole burning in Tm:YAG crystal under a moderate magnetic field (200G) with a well-defined orientation. The deep and long-lasting holes translate into a more efficient UOT imaging with a higher contrast and faste…
Fast imaging methods are needed to promote widespread clinical adoption of Ultrasound Tomography (UST), and more widely available UST hardware could support the experimental validation of new measurement configurations. In this work, an open-source 256-element transducer ring array was developed (morganjroberts.github.io/open-UST) and manufactured using rapid prototyping, for only £2k. Novel manufacturing techniques were used, resulting in a 1.17$^{\circ}$ mean beam axis skew angle, a 104 $μ$m mean element position error, and a $\pm$13.6 $μ$m deviation in matching layer thickness. The nominal …
An alternative approach to ultrasound computed tomography (USCT) for medical imaging is proposed, with the intent to (i) shorten acquisition time for devices with a large number of emitters, (ii) eliminate the calibration step, and (iii) suppress instrument noise. Inspired by seismic ambient field interferometry, the method rests on the active excitation of diffuse ultrasonic wavefields and the extraction of deterministic travel time information by inter-station correlation. To reduce stochastic errors and accelerate convergence, ensemble interferograms are obtained by phase-weighted stacking …
Ultrasound computed tomography (USCT) holds great promise for breast cancer screening. Waveform inversion-based image reconstruction methods account for higher order diffraction effects and can produce high-resolution USCT images, but are computationally demanding. Recently, a source encoding technique was combined with stochastic gradient descent to greatly reduce image reconstruction times. However, this method bundles the stochastic data fidelity term with the deterministic regularization term. This limitation can be overcome by replacing stochastic gradient descent (SGD) with a structured …
Magneto-acousto-electrical tomography (MAET), a combination of ultrasound imaging and electrical impedance tomography (EIT), offers both high resolution (in comparison to EIT) and high contrast (in comparison to ultrasound imaging). It is used to map the internal conductivity distribution of an imaging object. However, conductivity reconstruction in MAET is a challenge, so conventional MAET is mainly devoted to mapping the conductivity interface. This is primarily because integration byparts is used in the theory derivation, and the simplified measurement formula suggests the voltage is propor…
Ultrasound computed tomography (USCT) is an emerging imaging modality for breast imaging that can produce quantitative images that depict the acoustic properties of tissues. Computer-simulation studies, also known as virtual imaging trials, provide researchers with an economical and convenient route to systematically explore imaging system designs and image reconstruction methods. When simulating an imaging technology intended for clinical use, it is essential to employ realistic numerical phantoms that can facilitate the objective, or task-based, assessment of image quality. Moreover, when co…
Photoacoustic imaging of interphalangeal peripheral joints is of interest in the context of using the synovial membrane as a surrogate marker of rheumatoid arthritis. Previous work has shown that ultrasound produced by absorption of light at the epidermis reflects on the bone surfaces within the finger. When the reflected signals are backprojected in the region of interest, artifacts are produced, confounding interpretation of the images. In this work, we present an approach where the photoacoustic signals known to originate from the epidermis, are treated as virtual ultrasound transmitters, a…
In a standard computed tomography (CT) image, pixels having the same Hounsfield Units (HU) can correspond to different materials and it is therefore challenging to differentiate and quantify materials. Dual-energy CT (DECT) is desirable to differentiate multiple materials, but DECT scanners are not widely available as single-energy CT (SECT) scanners. Here we purpose a deep learning approach to perform DECT imaging by using standard SECT data. We designed a predenoising and difference learning mechanism to generate DECT images from SECT data. The performance of the deep learning-based DECT app…
OpenPros: A Large-Scale Dataset for Limited View Prostate Ultrasound Computed Tomography
The University of North Carolina at Chapel Hill（北卡罗来纳大学教堂山分校）；Johns Hopkins University（约翰霍普金斯大学）；The Pennsylvania State University（宾夕法尼亚州立大学）；QT Imaging, Inc.（QT影像公司）；National Institutes of Health（美国国立卫生研究院）；Iowa State University（爱荷华州立大学）；Google DeepMind（谷歌DeepMind）
Photoacoustic imaging has proven to be able to detect vascularization-driven optical absorption contrast associated with tumors. In order to detect breast tumors located a few centimeter deep in tissue, a sensitive ultrasound detector is of crucial importance for photoacoustic mammography. Further, because the expected photoacoustic frequency bandwidth (a few MHz to tens of kHz) is inversely proportional to the dimensions of light absorbing structures (0.5 to 10+ mm), proper choices of materials and their geometries, and proper considerations in design have to be made for optimal photoacoustic…
National Institute for Mathematical Sciences（国家数学科学研究所）；Yonsei University（延世大学）
This paper describes the mathematical structure of the ill-posed nonlinear inverse problem of low-dose dental cone-beam computed tomography (CBCT) and explains the advantages of a deep learning-based approach to the reconstruction of computed tomography images over conventional regularization methods. This paper explains the underlying reasons why dental CBCT is more ill-posed than standard computed tomography. Despite this severe ill-posedness, the demand for dental CBCT systems is rapidly growing because of their cost competitiveness and low radiation dose. We then describe the limitations o…
Medical imaging modalities have revolutionized health-care approaches by offering a better understanding of the human anatomy. Discovery of x-rays allowed the exploiting of the micro-scaled information of human anatomy. Computed tomography is one of the well-known imaging modalities using x-rays to create images of medical and non-medical objects. CT imaging has several variety of applications from medical diagnosis to industrial non-destructive testing. In this paper, we review computed tomography imaging modality and its applications in screening, diagnosis, and treatment and study some of t…
The ability of the Lorentz force to link a mechanical displacement to an electrical current presents a strong interest for medical acoustics, and three applications were studied in this thesis. In the first part of this work, a hydrophone was developed for mapping the particle velocity of an acoustic field. This hydrophone was constructed using a thin copper wire and an external magnetic field. A model was elaborated to determine the relationship between the acoustic pressure and the measured electrical current, which is induced by Lorentz force when the wire vibrates in the acoustic field of …
University of Texas Southwestern Medical Center（德克萨斯大学西南医学中心）
Generalizability is a concern when applying a deep learning (DL) model trained on one dataset to other datasets. Training a universal model that works anywhere, anytime, for anybody is unrealistic. In this work, we demonstrate the generalizability problem, then explore potential solutions based on transfer learning (TL) by using the cone-beam computed tomography (CBCT) to computed tomography (CT) image conversion task as the testbed. Previous works have converted CBCT to CT-like images. However, all of those works studied only one or two anatomical sites and used images from the same vendor's …
Spherical matrix arrays arguably represent an advantageous tomographic detection geometry for non-invasive deep tissue mapping of vascular networks and oxygenation with volumetric optoacoustic tomography (VOT). Hybridization of VOT with ultrasound (US) imaging remains difficult with this configuration due to the relatively large inter-element pitch of spherical arrays. We suggest a new approach for combining VOT and US contrast-enhanced imaging employing injection of clinically-approved microbubbles. Power Doppler (PD) and US localization imaging were enabled with a sparse US acquisition seque…
Hybrid imaging techniques utilize couplings of physical modalities -- they are called hybrid, because, typically, the excitation and measurement quantities belong to different modalities. Recently there has been an enormous research interest in this area because these methods promise very high resolution. In this paper we give a review on hybrid tomography methods for \emph{electrical conductivity} imaging. The reviewed imaging methods utilize couplings between electric, magnetic and ultrasound modalities. By this it is possible to perform high-resolution electrical impedance imaging and to ov…
Herein we report the first in-human transcranial imaging of brain function using photoacoustic computed tomography. Functional responses to benchmark motor tasks were imaged on both the skull-less and the skull-intact hemispheres of a hemicraniectomy patient. The observed brain responses in these preliminary results demonstrate the potential of photoacoustic computed tomography for achieving transcranial functional imaging.
Ultrasound-Guided Real-Time Spinal Motion Visualization for Spinal Instability Assessment
Chair for Computer Aided Medical Procedures and Augmented Reality（计算机辅助医疗程序与增强现实主席职位）；Technical University of Munich（慕尼黑技术大学）；Munich Center for Machine Learning (MCML)（慕尼黑机器学习中心）；University of Hong Kong（香港大学）
Cone beam computed tomography (CBCT) images can be used for dose calculation in adaptive radiation therapy (ART). The main challenges are the large artefacts and inaccurate Hounsfield unit (HU) values. Currently, deformed planning CT images are often used for this purpose, although anatomical accuracy might be a concern. Ideally, we would like to convert CBCT images to CT images with artifacts removed or greatly reduced and HU values corrected while keeping the anatomical accuracy. Recently, deep learning has achieved great success in image-to-image translation tasks. It is very difficult to a…
Ultrasound attenuation is caused by absorption and scattering in tissue and is thus a function of tissue composition, hence its imaging offers great potential for screening and differential diagnosis. In this paper we propose a novel method that allows to reconstruct spatial attenuation distribution in tissue based on computed tomography, using reflections from a passive acoustic reflector. This requires a standard ultrasound transducer operating in pulse-echo mode, thus it can be implemented on conventional ultrasound systems with minor modifications. We use calibration with water measurement…
A computer-aided detection (CAD) system for the identification of pulmonary nodules in low-dose multi-detector helical Computed Tomography (CT) images with 1.25 mm slice thickness is presented. The basic modules of our lung-CAD system, a dot-enhancement filter for nodule candidate selection and a neural classifier for false-positive finding reduction, are described. The results obtained on the collected database of lung CT scans are discussed.
Purpose: Electron density is the most important tissue property influencing photon and ion dose distributions in radiotherapy patients. Dual-energy computed tomography (DECT) enables the determination of electron density by combining the information on photon attenuation obtained at two different tube voltages. Most algorithms suggested so far use the CT numbers provided after image reconstruction as input parameters, i.e. are imaged-based. To explore the accuracy that can be achieved with these approaches, we quantify the intrinsic methodological and calibration uncertainty of the seemingly s…
In conventional absorption based x-ray computed tomography (CT), the noise variance in reconstructed CT images scales with spatial resolution following an inverse cubic relationship. Without reconstruction, in x-ray absorption radiography, the noise variance scales as an inverse square with spatial resolution. In this letter we report that while the inverse square relationship holds for differential phase contrast projection imaging, there exists an anomalous scaling law in differential phase contrast CT, where the noise variance scales with spatial resolution following an inverse linear relat…
Photo-acoustic Tomography (PAT) and Thermo-acoustic Tomography (TAT) are medical imaging modalities that combine the high contrast of radiative properties of tissues with the high resolution of ultrasound. In both modalities, a first step concerns the reconstruction of the radiation-induced source of ultrasound. Transient Elastography (TE) and Magnetic Resonance Elastography (MRE) combine the high elastic contrast of tissues with the high resolution of ultrasound and magnetic resonance, respectively. In both modalities, a first step concerns the reconstruction of the elastic displacement. The …
The phosphor nanoparticles made of doped semiconductors, pre-excited by well-collimated X-ray radiation, were recently reported for their light emission upon NIR light stimulation. The characteristics of X-ray energy storage and NIR stimulated emission is highly desirable to design targeting probes and improve molecular and cellular imaging. Here we propose stored luminescence computed tomography (SLCT), perform realistic numerical simulation, and demonstrate a much-improved spatial resolution in a preclinical research context. The future opportunities are also discussed along this direction.
Photoacoustic tomography (PAT) combines the advantages of the spectroscopic optical absorption contrast and acoustic resolution with deep penetration, and becomes an important novel biomedical imaging technology for scientific research and clinical diagnosis. In this paper, an imaging size-adjustable PAT system is proposed for clinical applications, which can adapt for different size imaging targets. Comparing with the conventional PAT system setup which with a fixed radius ring shape ultrasound transducer (UT) array, the proposed system, which is based on sectorial ultrasound transducer array…
A computer-aided detection (CAD) system for the identification of lung internal nodules in low-dose multi-detector helical Computed Tomography (CT) images was developed in the framework of the MAGIC-5 project. The three modules of our lung CAD system, a segmentation algorithm for lung internal region identification, a multi-scale dot-enhancement filter for nodule candidate selection and a multi-scale neural technique for false positive finding reduction, are described. The results obtained on a dataset of low-dose and thin-slice CT scans are shown in terms of free response receiver operating c…
Overranging or overscanning increases the dose delivered to patients undergoing helical Computed Tomography examinations. In order to reduce it, nowadays most of the multidetector tomographs close the X-ray beam aperture at the scan extremes. This technical innovation, usually referred to as dynamic or adaptive collimation, also influences the overranging assessment methods. In particular, the film free approach proposed in previous studies is not suitable for these modern tomographs. The present study aims to introduce a new method of estimating overranging with real time dosimetry, even suit…
Recently, an ultra-low-cost linear scan based tomography architecture was proposed by our team. Similar to linear tomosynthesis, the source and detector are translated in opposite directions and the data acquisition system targets on a region-of-interest (ROI) to acquire data for image reconstruction. This kind of tomography architecture was named parallel translational computed tomography (PTCT). In our previous studies, filtered backprojection (FBP)-type algorithms were developed to reconstruct images from PTCT. However, the reconstructed ROI images from truncated projections have severe tru…
Photoacoustic Computed Tomography (PACT) is a major configuration of photoacoustic imaging, a hybrid noninvasive modality for both functional and molecular imaging. PACT has rapidly gained importance in the field of biomedical imaging due to superior performance as compared to conventional optical imaging counterparts. However, the overall cost of developing a PACT system is one of the challenges towards clinical translation of this novel technique. The cost of a typical commercial PACT system originates from optical source, ultrasound detector, and data acquisition unit. With growing applicat…
The classic imaging geometry for computed tomography is for collection of un-truncated projections and reconstruction of a global image, with the Fourier transform as the theoretical foundation that is intrinsically non-local. Recently, interior tomography research has led to theoretically exact relationships between localities in the projection and image spaces and practically promising reconstruction algorithms. Initially, interior tomography was developed for x-ray computed tomography. Then, it has been elevated as a general imaging principle. Finally, a novel framework known as omni-tomogr…
Limited-angle computed tomography (CT) image reconstruction is a challenging reconstruction problem in the fields of CT. With the development of deep learning, the generative adversarial network (GAN) perform well in image restoration by approximating the distribution of training sample data. In this paper, we proposed an effective GAN-based inpainting method to restore the missing sinogram data for limited-angle scanning. To estimate the missing data, we design the generator and discriminator of the patch-GAN and train the network to learn the data distribution of the sinogram. We obtain the …
Dual-energy computed tomography (CT) is to reconstruct images of an object from two projection datasets generated from two distinct x-ray source energy spectra. It can provide more accurate attenuation quantification than conventional CT with a single x-ray energy spectrum. In the diagnostic energy range, x-ray energy-dependent attenuation can be approximated as a linear combination of photoelectric absorption and Compton scattering. Hence, two physical components of x-ray attenuation can be determined from two spectral informative projection datasets to achieve monochromatic imaging and mater…
In this paper, the Primal-Dual UNet for sparse view CT reconstruction is modified to be applicable to cone beam projections and perform reconstructions of entire volumes instead of slices. Experiments show that the PSNR of the proposed method is increased by 10dB compared to the direct FDK reconstruction and almost 3dB compared to the modified original Primal-Dual Network when using only 23 projections. The presented network is not optimized wrt. memory consumption or hyperparameters but merely serves as a proof of concept and is limited to low resolution projections and volumes.
