Advanced ultrasound computed tomography techniques like full-waveform inversion are mathematically challenging and orders of magnitude more computationally expensive than conventional ultrasound imaging methods. This computational and algorithmic complexity, and a lack of open-source libraries in this field, represent a barrier preventing the generalised adoption of these techniques, slowing the pace of research and hindering reproducibility. Consequently, we have developed Stride, an open-source Python library for the solution of large-scale ultrasound tomography problems. On one hand, Stride provides high-level interfaces and tools for expressing the types of optimisation problems encountered in medical ultrasound tomography. On the other, these high-level abstractions seamlessly integrate with high-performance wave-equation solvers and with scalable parallelisation routines. The wave-equation solvers are generated automatically using Devito, a domain specific language, and the parallelisation routines are provided through the custom actor-based library Mosaic. Through a series of examples, we show how Stride can handle realistic tomographic problems, in 2D and 3D, providing intuitive and flexible interfaces that scale from a local multi-processing environment to a multi-node high-performance cluster.
Ultrasound-modulated optical tomography enables sharp 3D optical imaging of tissues and other turbid media, but the light modulation signals are hard to sensitively measure. A common solution, involving photorefractive crystals, enables the measurement of a relatively slow and low-spatial-resolution signal tracking the envelope of the ultrasound wave. We reexamine the photorefractive detection principle both intuitively and quantitatively, and from this analysis we predict that the photodetector should additionally see a fast response at twice the ultrasound frequency, and correspondingly high…
A well-known diagnostic imaging modality, termed ultrasound tomography, was quickly developed for the detection of very small tumors whose sizes are smaller than the wavelength of the incident pressure wave without ionizing radiation, compared to the current gold-standard X-ray mammography. Based on inverse scattering technique, ultrasound tomography uses some material properties such as sound contrast or attenuation to detect small targets. The Distorted Born Iterative Method (DBIM) based on first-order Born approximation is an efficient diffraction tomography approach. Compressed Sensing (CS…
Ultrasound speckle is a granular texture pattern appearing in ultrasound imaging. It can be used to distinguish tissues and identify pathologies. Lorentz force electrical impedance tomography is an ultrasound-based medical imaging technique of the tissue electrical conductivity. It is based on the application of an ultrasound wave in a medium placed in a magnetic field and on the measurement of the induced electric current due to Lorentz force. Similarly to ultrasound imaging, we hypothesized that a speckle could be observed with Lorentz force electrical impedance tomography imaging. In this s…
The sensitivity of phase-sensitive detectors, such as piezoelectric detectors, becomes increasingly directional as the detector element size increases. In contrast, pyroelectric sensors, which are phase-insensitive, retain their omni-directionality even for large element sizes, although they have significantly poorer temporal resolution. This study uses numerical models to examine whether phase-insensitive detectors can be used advantageously in ultrasound tomography, specifically absorption tomography, when the number of detectors is sparse. We present measurement models for phase-sensitive a…
Ultrasound Computed Tomography (USCT) has great potential for 3D quantitative imaging of acoustic breast tissue properties. Typical devices include high-frequency transducers, which makes tomography techniques based on numerical wave propagation simulations computationally challenging, especially in 3D. Therefore, despite the finite-frequency nature of ultrasonic waves, ray-theoretical approaches to transmission tomography are still widely used. This work introduces finite-frequency traveltime tomography to medical ultrasound. In addition to being computationally tractable for 3D imaging at hi…
Ultrasound modulated optical tomography (UOT) is a powerful imaging technique to discriminate healthy from unhealthy biological tissues based on their optical signature. Among the numerous detection techniques developed for acousto-optic imaging, only those based on spectral filtering are intrinsically immune to speckle decorrelation. This paper reports on UOT imaging based on spectral hole burning in Tm:YAG crystal under a moderate magnetic field (200G) with a well-defined orientation. The deep and long-lasting holes translate into a more efficient UOT imaging with a higher contrast and faste…
Ultrasound computed tomography (USCT) holds great promise for improving the detection and management of breast cancer. Because they are based on the acoustic wave equation, waveform inversion-based reconstruction methods can produce images that possess improved spatial resolution properties over those produced by ray-based methods. However, waveform inversion methods are computationally demanding and have not been applied widely in USCT breast imaging. In this work, source encoding concepts are employed to develop an accelerated USCT reconstruction method that circumvents the large computation…
Ultrasound-modulated optical tomography is an emerging biomedical imaging modality which uses the spatially localised acoustically-driven modulation of coherent light as a probe of the structure and optical properties of biological tissues. In this work we begin by providing an overview of forward modelling methods, before deriving a linearised diffusion-style model which calculates the first-harmonic modulated flux measured on the boundary of a given domain. We derive and examine the correlation measurement density functions of the model which describe the sensitivity of the modality to pertu…
An alternative approach to ultrasound computed tomography (USCT) for medical imaging is proposed, with the intent to (i) shorten acquisition time for devices with a large number of emitters, (ii) eliminate the calibration step, and (iii) suppress instrument noise. Inspired by seismic ambient field interferometry, the method rests on the active excitation of diffuse ultrasonic wavefields and the extraction of deterministic travel time information by inter-station correlation. To reduce stochastic errors and accelerate convergence, ensemble interferograms are obtained by phase-weighted stacking …
Fast imaging methods are needed to promote widespread clinical adoption of Ultrasound Tomography (UST), and more widely available UST hardware could support the experimental validation of new measurement configurations. In this work, an open-source 256-element transducer ring array was developed (morganjroberts.github.io/open-UST) and manufactured using rapid prototyping, for only £2k. Novel manufacturing techniques were used, resulting in a 1.17$^{\circ}$ mean beam axis skew angle, a 104 $μ$m mean element position error, and a $\pm$13.6 $μ$m deviation in matching layer thickness. The nominal …
Ultrasound computed tomography (USCT) holds great promise for breast cancer screening. Waveform inversion-based image reconstruction methods account for higher order diffraction effects and can produce high-resolution USCT images, but are computationally demanding. Recently, a source encoding technique was combined with stochastic gradient descent to greatly reduce image reconstruction times. However, this method bundles the stochastic data fidelity term with the deterministic regularization term. This limitation can be overcome by replacing stochastic gradient descent (SGD) with a structured …
Magneto-acousto-electrical tomography (MAET), a combination of ultrasound imaging and electrical impedance tomography (EIT), offers both high resolution (in comparison to EIT) and high contrast (in comparison to ultrasound imaging). It is used to map the internal conductivity distribution of an imaging object. However, conductivity reconstruction in MAET is a challenge, so conventional MAET is mainly devoted to mapping the conductivity interface. This is primarily because integration byparts is used in the theory derivation, and the simplified measurement formula suggests the voltage is propor…
Ultrasound computed tomography (USCT) is an emerging imaging modality for breast imaging that can produce quantitative images that depict the acoustic properties of tissues. Computer-simulation studies, also known as virtual imaging trials, provide researchers with an economical and convenient route to systematically explore imaging system designs and image reconstruction methods. When simulating an imaging technology intended for clinical use, it is essential to employ realistic numerical phantoms that can facilitate the objective, or task-based, assessment of image quality. Moreover, when co…
Hybrid Full Waveform Inversion Assisted by Rytov Approximation for Musculoskeletal Ultrasound Computed Tomography
Institute of Acoustics, Chinese Academy of Sciences（中国科学院声学研究所）；University of Chinese Academy of Sciences（中国科学院大学）；Department of Ultrasound, Peking University Third Hospital（北京大学第三医院超声科）；Peking University Third Hospital（北京大学第三医院）；College of Future Technology, Peking University（北京大学未来技术学院）；National Biomedical Imaging Center, Peking University（北京大学国家生物医学成像中心）；Peking University（北京大学）；Université Bourgogne Europe（勃艮第欧洲大学）
OpenPros: A Large-Scale Dataset for Limited View Prostate Ultrasound Computed Tomography
The University of North Carolina at Chapel Hill（北卡罗来纳大学教堂山分校）；Johns Hopkins University（约翰霍普金斯大学）；The Pennsylvania State University（宾夕法尼亚州立大学）；QT Imaging, Inc.（QT影像公司）；National Institutes of Health（美国国立卫生研究院）；Iowa State University（爱荷华州立大学）；Google DeepMind（谷歌DeepMind）
Photoacoustic imaging of interphalangeal peripheral joints is of interest in the context of using the synovial membrane as a surrogate marker of rheumatoid arthritis. Previous work has shown that ultrasound produced by absorption of light at the epidermis reflects on the bone surfaces within the finger. When the reflected signals are backprojected in the region of interest, artifacts are produced, confounding interpretation of the images. In this work, we present an approach where the photoacoustic signals known to originate from the epidermis, are treated as virtual ultrasound transmitters, a…
Photoacoustic imaging has proven to be able to detect vascularization-driven optical absorption contrast associated with tumors. In order to detect breast tumors located a few centimeter deep in tissue, a sensitive ultrasound detector is of crucial importance for photoacoustic mammography. Further, because the expected photoacoustic frequency bandwidth (a few MHz to tens of kHz) is inversely proportional to the dimensions of light absorbing structures (0.5 to 10+ mm), proper choices of materials and their geometries, and proper considerations in design have to be made for optimal photoacoustic…
Hybrid imaging techniques utilize couplings of physical modalities -- they are called hybrid, because, typically, the excitation and measurement quantities belong to different modalities. Recently there has been an enormous research interest in this area because these methods promise very high resolution. In this paper we give a review on hybrid tomography methods for \emph{electrical conductivity} imaging. The reviewed imaging methods utilize couplings between electric, magnetic and ultrasound modalities. By this it is possible to perform high-resolution electrical impedance imaging and to ov…
Photo-acoustic Tomography (PAT) and Thermo-acoustic Tomography (TAT) are medical imaging modalities that combine the high contrast of radiative properties of tissues with the high resolution of ultrasound. In both modalities, a first step concerns the reconstruction of the radiation-induced source of ultrasound. Transient Elastography (TE) and Magnetic Resonance Elastography (MRE) combine the high elastic contrast of tissues with the high resolution of ultrasound and magnetic resonance, respectively. In both modalities, a first step concerns the reconstruction of the elastic displacement. The …
Photoacoustic Computed Tomography (PACT) is a major configuration of photoacoustic imaging, a hybrid noninvasive modality for both functional and molecular imaging. PACT has rapidly gained importance in the field of biomedical imaging due to superior performance as compared to conventional optical imaging counterparts. However, the overall cost of developing a PACT system is one of the challenges towards clinical translation of this novel technique. The cost of a typical commercial PACT system originates from optical source, ultrasound detector, and data acquisition unit. With growing applicat…
Recent ultrasound imaging modalities based on ultrasound computed tomography indicate a huge potential to detect pathologies is tissue due to altered biomechanical properties. Especially the imaging of speed-of-sound (SoS) distribution in tissue has shown clinical promise and thus gained increasing attention in the field -- with several methods proposed based on transmission mode tomography. SoS imaging using conventional ultrasound (US) systems would be convenient and easy for clinical translation, but this requires using conventional US probes with single-sides tissue access and thus pulse-e…
A method is proposed for high-resolution, three-dimensional reconstruction of internal structure of objects from planar transmission images. The described approach can be used with any form of radiation or matter waves, in principle, provided that the depth of field is smaller than the thickness of the sample. The physical optics basis for the method is elucidated and the reconstruction algorithm is presented in detail. A simulated example demonstrates an application of the method to three-dimensional electron transmission imaging of a nanoparticle under realistic radiation dose and spatial re…
Magneto-acoustic tomography combines near-field radio-frequency (RF) and ultrasound with the aim of creating a safe, high resolution, high contrast hybrid imaging technique. We present continuous-wave magneto-acoustic imaging techniques, which improve SNR and/or reduce the required peak-to-average excitation power ratio, to make further integration and larger fields of view feasible. This method relies on the coherency between RF excitation and the resulting ultrasound generated through Lorentz force interactions, which was confirmed by our previous work. We provide detailed methodology, clari…
Kidney cancer is a severe disease which can be treated non-invasively using high-intensity focused ultrasound (HIFU) therapy. However, tissue in front of the transducer and the deep location of kidney can cause significant losses to the efficiency of the treatment. The effect of attenuation, refraction and reflection due to different tissue types on HIFU therapy of the kidney was studied using a nonlinear ultrasound simulation model. The geometry of the tissue was derived from a computed tomography (CT) dataset of a patient which had been segmented for water, bone, soft tissue, fat and kidney.…
A Learning-based Framework for Spatial Impulse Response Compensation in 3D Photoacoustic Computed Tomography
Department of Electrical and Computer Engineering, University of Illinois Urbana–Champaign（电气与计算机工程系，伊利诺伊大学厄巴纳-香槟分校）；Department of Bioengineering, University of Illinois Urbana–Champaign（生物工程系，伊利诺伊大学厄巴纳-香槟分校）；TomoWave Laboratories, Inc.（TomoWave实验室，Inc.）；Department of Biomedical Engineering, The University of Texas at Austin（生物医学工程系，德克萨斯大学奥斯汀分校）
Background: Individual skull models of bone density and geometry are important when planning the expected transcranial ultrasound acoustic field and estimating mechanical and thermal safety in low-intensity transcranial ultrasound stimulation (TUS) studies. Computed tomography (CT) images have typically been used to estimate skull acoustic properties. However, obtaining CT images in research participants may be prohibitive due to exposure to ionising radiation and limited access to CT scanners within research groups. Objective: We present a validated open-source tool for researchers to obtain …
Photoacoustic computed tomography (PACT), also known as optoacoustic tomography, is an emerging imaging technique that holds great promise for biomedical imaging. PACT is a hybrid imaging method that can exploit the strong endogenous contrast of optical methods along with the high spatial resolution of ultrasound methods. In its canonical form that is addressed in this article, PACT seeks to estimate the photoacoustically-induced initial pressure distribution within the object. Image reconstruction methods are employed to solve the acoustic inverse problem associated with the image formation p…
Optoacoustic tomography (OAT), also known as photoacoustic tomography, is a rapidly emerging hybrid imaging technique that possesses great potential for a wide range of biomedical imaging applications. In OAT, a laser is employed to illuminate the tissue of interest and acoustic signals are produced via the photoacoustic effect. From these data, an estimate of the distribution of the absorbed optical energy density within the tissue is reconstructed, referred to as the object function. This quantity is defined, in part, by the distribution of light fluence within the tissue that is established…
Photoacoustic computed tomography (PACT) detects light-induced ultrasound waves to reconstruct the optical absorption contrast of the biological tissues. Due to its relatively deep penetration (several centimeters in soft tissue), high spatial resolution, and inherent functional sensitivity, PACT has great potential for imaging mouse brains with endogenous and exogenous contrasts, which is of immense interest to the neuroscience community. However, conventional PACT either assumes homogenous optical fluence within the brain or uses a simplified attenuation model for optical fluence estimation.…
Revisiting the joint estimation of initial pressure and speed-of-sound distributions in photoacoustic computed tomography with consideration of canonical object constraints
