A recommender system based on ranks is proposed, where an expert's ranking of a set of objects and a user's ranking of a subset of those objects are combined to make a prediction of the user's ranking of all objects. The rankings are assumed to be induced by latent continuous variables corresponding to the grades assigned by the expert and the user to the objects. The dependence between the expert and user grades is modelled by a copula in some parametric family. Given a prior distribution on the copula parameter, the user's complete ranking is predicted by the mode of the posterior predictive distribution of the user's complete ranking conditional on the expert's complete and the user's incomplete rankings. Various Markov chain Monte-Carlo algorithms are proposed to approximate the predictive distribution or only its mode. The predictive distribution can be obtained exactly for the Farlie-Gumbel-Morgenstern copula family, providing a benchmark for the approximation accuracy of the algorithms. The method is applied to the MovieLens 100k dataset with a Gaussian copula modelling dependence between the expert's and user's grades.
This paper provides bayesian analysis of singular Marshall-Olkin bivariate Pareto distribution. We consider three parameter singular Marshall-Olkin bivariate Pareto distribution. We consider two types of prior - reference prior and gamma prior. Bayes estimate of the parameters are calculated based on slice cum gibbs sampler and Lindley approximation. Credible interval is also provided for all methods and all prior distributions. A data analysis is kept for illustrative purpose.
This paper provides two different novel approaches of slice sampling to estimate the parameters of absolute continuous Marshall-Olkin bivariate Pareto distribution with location and scale parameters. We carry out the bayesian analysis taking gamma prior for shape and scale parameters and truncated normal for location parameters. Credible intervals and coverage probabilities are also provided for all methods. A real-life data analysis is shown for illustrative purpose.
It is often of interest to combine available estimates of a similar quantity from multiple data sources. When the corresponding variances of each estimate are also available, a model should take into account the uncertainty of the estimates themselves as well as the uncertainty in the estimation of variances. In addition, if there exists a strong association between estimates and their variances, the correlation between these two quantities should also be considered. In this paper, we propose a bivariate hierarchical Bayesian model that jointly models the estimates and their estimated variance…
Several bivariate beta distributions have been proposed in the literature. In particular, Olkin and Liu (2003) proposed a 3 parameter bivariate beta model, which Arnold and Ng (2011) extend to 5 and 8 parameter models. The 3 parameter model allows for only positive correlation, while the latter models can accommodate both positive and negative correlation. However, these come at the expense of a density that is mathematically intractable. The focus of this research is on Bayesian estimation for the 5 and 8 parameter models. Since the likelihood does not exist in closed form, we apply approxima…
Bivariate count data arise in several different disciplines (epidemiology, marketing, sports statistics, etc., to name but a few) and the bivariate Poisson distribution which is a generalization of the Poisson distribution plays an important role in modeling such data. In this article, we consider the inferential aspect of a bivariate Poisson conditionals distribution for which both the conditionals are Poisson but the marginals are typically non-Poisson. It has Poisson marginals only in the case of independence. It appears that a simple iterative procedure under the maximum likelihood method …
The tail of a bivariate distribution function in the domain of attraction of a bivariate extreme-value distribution may be approximated by the one of its extreme-value attractor. The extreme-value attractor has margins that belong to a three-parameter family and a dependence structure which is characterised by a spectral measure, that is a probability measure on the unit interval with mean equal to one half. As an alternative to parametric modelling of the spectral measure, we propose an infinite-dimensional model which is at the same time manageable and still dense within the class of spectra…
We consider nonparametric inference for event time distributions based on current status data. We show that in this scenario conventional mixture priors, including the popular Dirichlet process mixture prior, lead to biologically uninterpretable results as they unnaturally skew the probability mass for the event times toward the extremes of the observed data. Simple assumptions on dependent censoring can fix the problem. We then extend the discussion to bivariate current status data with partial ordering of the two outcomes. In addition to dependent censoring, we also exploit some minimal know…
In a bivariate meta-analysis the number of diagnostic studies involved is often very low so that frequentist methods may result in problems. Bayesian inference is attractive as informative priors that add small amount of information can stabilise the analysis without overwhelming the data. However, Bayesian analysis is often computationally demanding and the selection of the prior for the covariance matrix of the bivariate structure is crucial with little data. The integrated nested Laplace approximations (INLA) method provides an efficient solution to the computational issues by avoiding any …
This paper introduces the \proglang{R} package \pkg{meta4diag} for implementing Bayesian bivariate meta-analyses of diagnostic test studies. Our package \pkg{meta4diag} is a purpose-built front end of the \proglang{R} package \pkg{INLA}. While \pkg{INLA} offers full Bayesian inference for the large set of latent Gaussian models using integrated nested Laplace approximations, \pkg{meta4diag} extracts the features needed for bivariate meta-analysis and presents them in an intuitive way. It allows the user a straightforward model-specification and offers user-specific prior distributions. Further…
In this paper, we describe a Bayesian nonparametric approach to make inference for a bivariate spherically symmetric distribution. We consider a Dirichlet invariant process prior on the set of all bivariate spherically symmetric distributions and we derive the Dirichlet invariant process posterior. Indeed, our approach is an extension of Dirichlet invariant process for the symmetric distributions on the real line to a bivariate spherically symmetric distribution where the underlying distribution is invariant under a finite group of rotations. Moreover, we obtain the Dirichlet invariant process…
Civil registration vital statistics (CRVS) data are used to produce national estimates of maternal mortality, but are often subject to substantial reporting errors due to misclassification of maternal deaths. The accuracy of CRVS systems can be assessed by comparing CRVS-based counts of maternal and non-maternal deaths to those obtained from specialized studies, which are rigorous assessments of maternal mortality for a given country-period. We developed a Bayesian bivariate random walk model to estimate sensitivity and specificity of the reporting on maternal mortality in CRVS data, and assoc…
Subgroup analysis is a frequently used tool for evaluating heterogeneity of treatment effect and heterogeneity in treatment harm across observed baseline patient characteristics. While treatment efficacy and adverse event measures are often reported separately for each subgroup, analyzing their within-subgroup joint distribution is critical for better informed patient decision-making. In this paper, we describe Bayesian models for performing a subgroup analysis to compare the joint occurrence of a primary endpoint and an adverse event between two treatment arms. Our approaches emphasize estima…
A bivariate distribution with continuous margins can be uniquely decomposed via a copula and its marginal distributions. We consider the problem of estimating the copula function and adopt a Bayesian approach. On the space of copula functions, we construct a finite-dimensional approximation subspace that is parametrized by a doubly stochastic matrix. A major problem here is the selection of a prior distribution on the space of doubly stochastic matrices also known as the Birkhoff polytope. The main contributions of this paper are the derivation of a simple formula for the Jeffreys prior and sh…
Study of the bivariate normal distribution raises the full range of issues involving objective Bayesian inference, including the different types of objective priors (e.g., Jeffreys, invariant, reference, matching), the different modes of inference (e.g., Bayesian, frequentist, fiducial) and the criteria involved in deciding on optimal objective priors (e.g., ease of computation, frequentist performance, marginalization paradoxes). Summary recommendations as to optimal objective priors are made for a variety of inferences involving the bivariate normal distribution. In the course of the investi…
Bivariate meta-analysis provides a useful framework for combining information across related studies and has been utilised to combine evidence from clinical studies to evaluate treatment efficacy on two outcomes. It has also been used to investigate surrogacy patterns between treatment effects on the surrogate endpoint and the final outcome. Surrogate endpoints play an important role in drug development when they can be used to measure treatment effect early compared to the final outcome and to predict clinical benefit or harm. The standard bivariate meta-analytic approach models the observed …
In this article, we analyze perinatal data with birth weight (BW) as primarily interesting response variable. Gestational age (GA) is usually an important covariate and included in polynomial form. However, in opposition to this univariate regression, bivariate modeling of BW and GA is recommended to distinguish effects on each, on both, and between them. Rather than a parametric bivariate distribution, we apply conditional copula regression, where marginal distributions of BW and GA (not necessarily of the same form) can be estimated independently, and where the dependence structure is modele…
Model-based geostatistical design involves the selection of locations to collect data to minimise an expected loss function over a set of all possible locations. The loss function is specified to reflect the aim of data collection, which, for geostatistical studies, could be to minimise the prediction uncertainty at unobserved locations. In this paper, we propose a new approach to design such studies via a loss function derived through considering the entropy about the model predictions and the parameters of the model. The approach also includes a multivariate extension to generalised linear s…
Statistical analyses of directional or angular data have applications in a variety of fields, such as geology, meteorology and bioinformatics. There is substantial literature on descriptive and inferential techniques for univariate angular data, with the bivariate (or more generally, multivariate) cases receiving more attention in recent years. More specifically, the bivariate wrapped normal, von Mises sine and von Mises cosine distributions, and mixtures thereof, have been proposed for practical use. However, there is a lack of software implementing these distributions and the associated infe…
This article focuses on the estimation and design aspects of a bivariate collocated cokriging experiment. For a large class of covariance matrices, a linear dependency criterion is identified, which allows the best linear unbiased estimator of the primary variable in a bivariate collocated cokriging setup to reduce to a univariate kriging estimator. Exact optimal designs for efficient prediction for such simple and ordinary reduced cokriging models with one-dimensional inputs are determined. Designs are found by minimizing the maximum and the integrated prediction variance, where the primary v…
In this paper, the panel count data analysis for recurrent events is considered. Such analysis is useful for studying tumor or infection recurrences in both clinical trial and observational studies. A bivariate Gaussian Cox process model is proposed to jointly model the observation process and the recurrent event process. Bayesian nonparametric inference is proposed for simultaneously estimating regression parameters, bivariate frailty effects and baseline intensity functions. Inference is done through Markov chain Monte Carlo, with fully developed computational techniques. Predictive inferenc…
This paper proposes Bayesian mosaic, a parallelizable composite posterior, for scalable Bayesian inference on a broad class of multivariate discrete data models. Sampling is embarrassingly parallel since Bayesian mosaic is a multiplication of component posteriors that can be independently sampled from. Analogous to composite likelihood methods, these component posteriors are based on univariate or bivariate marginal densities. Utilizing the fact that the score functions of these densities are unbiased, we show that Bayesian mosaic is consistent and asymptotically normal under mild conditions. …
In this paper, we provide a method to learn the directed structure of a Bayesian network using data. The data is accessed by making conditional probability queries to a black-box model. We introduce a notion of simplicity of representation of conditional probability tables for the nodes in the Bayesian network, that we call "low rankness". We connect this notion to the Fourier transformation of real valued set functions and propose a method which learns the exact directed structure of a `low rank` Bayesian network using very few queries. We formally prove that our method correctly recovers the…
University of California, Santa Barbara（加州大学圣巴巴拉分校）
Tensor decomposition is an effective approach to compress over-parameterized neural networks and to enable their deployment on resource-constrained hardware platforms. However, directly applying tensor compression in the training process is a challenging task due to the difficulty of choosing a proper tensor rank. In order to achieve this goal, this paper proposes a Bayesian tensorized neural network. Our Bayesian method performs automatic model compression via an adaptive tensor rank determination. We also present approaches for posterior density calculation and maximum a posteriori (MAP) est…
Remote, bivariate expert elicitation to determine the prior probability distribution for sample size calculation in a Bayesian non-inferiority multicenter randomized controlled trial (Croup Dosing Trial)
The bivariate normal density with unit variance and correlation $ρ$ is well-known. We show that by integrating out $ρ$, the result is a function of the maximum norm. The Bayesian interpretation of this result is that if we put a uniform prior over $ρ$, then the marginal bivariate density depends only on the maximal magnitude of the variables. The square-shaped isodensity contour of this resulting marginal bivariate density can also be regarded as the equally-weighted mixture of bivariate normal distributions over all possible correlation coefficients. This density links to the Khintchine mixtu…
The modelling of empirically observed data is commonly done using mixtures of probability distributions. In order to model angular data, directional probability distributions such as the bivariate von Mises (BVM) is typically used. The critical task involved in mixture modelling is to determine the optimal number of component probability distributions. We employ the Bayesian information-theoretic principle of minimum message length (MML) to distinguish mixture models by balancing the trade-off between the model's complexity and its goodness-of-fit to the data. We consider the problem of modell…
The cluster-weighted model (CWM) is a mixture model with random covariates which allows for flexible clustering and density estimation of a random vector composed by a response variable and by a set of covariates. In this class of models, the generalized linear exponential CWM is here introduced especially for modeling bivariate data of mixed-type. Its natural counterpart, in the family of latent class models, is also defined. Maximum likelihood parameter estimates are derived using the EM algorithm and model selection is carried out using the Bayesian information criterion (BIC). Artificial a…
Low rank tensor ring model is powerful for image completion which recovers missing entries in data acquisition and transformation. The recently proposed tensor ring (TR) based completion algorithms generally solve the low rank optimization problem by alternating least squares method with predefined ranks, which may easily lead to overfitting when the unknown ranks are set too large and only a few measurements are available. In this paper, we present a Bayesian low rank tensor ring model for image completion by automatically learning the low rank structure of data. A multiplicative interaction …
This paper develops some objective priors for certain parameters of the bivariate normal distribution. The parameters considered are the regression coefficient, the generalized variance, and the ratio of the conditional variance of one variable given the other to the marginal variance of the other variable. The criterion used is the asymptotic matching of coverage probabilities of Bayesian credible intervals with the corresponding frequentist coverage probabilities. The paper uses various matching criteria, namely, quantile matching, matching of distribution functions, highest posterior densit…
We develop a Bayesian nonparametric extension of the popular Plackett-Luce choice model that can handle an infinite number of choice items. Our framework is based on the theory of random atomic measures, with the prior specified by a gamma process. We derive a posterior characterization and a simple and effective Gibbs sampler for posterior simulation. We develop a time-varying extension of our model, and apply it to the New York Times lists of weekly bestselling books.
Forecast ensembles are typically employed to account for prediction uncertainties in numerical weather prediction models. However, ensembles often exhibit biases and dispersion errors, thus they require statistical post-processing to improve their predictive performance. Two popular univariate post-processing models are the Bayesian model averaging (BMA) and the ensemble model output statistics (EMOS). In the last few years increased interest has emerged in developing multivariate post-processing models, incorporating dependencies between weather quantities, such as for example a bivariate dis…
University of Electronic Science and Technology of China（电子科技大学）；China Academy of Engineering Physics（中国工程物理研究院）
In this paper, we consider the problem of low-rank phase retrieval whose objective is to estimate a complex low-rank matrix from magnitude-only measurements. We propose a hierarchical prior model for low-rank phase retrieval, in which a Gaussian-Wishart hierarchical prior is placed on the underlying low-rank matrix to promote the low-rankness of the matrix. Based on the proposed hierarchical model, a variational expectation-maximization (EM) algorithm is developed. The proposed method is less sensitive to the choice of the initialization point and works well with random initialization. Simulat…
We introduce a flexible and scalable class of Bayesian geostatistical models for discrete data, based on the class of nearest neighbor mixture transition distribution processes (NNMP), referred to as discrete NNMP. The proposed class characterizes spatial variability by a weighted combination of first-order conditional probability mass functions (pmfs) for each one of a given number of neighbors. The approach supports flexible modeling for multivariate dependence through specification of general bivariate discrete distributions that define the conditional pmfs. Moreover, the discrete NNMP allo…
The truncated plurigaussian model is often used to simulate the spatial distribution of random categorical variables such as geological facies. The problems addressed in this paper are the estimation of parameters of the truncation map for the truncated plurigaussian model. Unlike standard truncation maps, in this paper a colored Voronoi tessellation with number of nodes, locations of nodes, and category associated with each node all treated as unknowns in the optimization. Parameters were adjusted to match categorical bivariate unit-lag probabilities, which were obtained from a larger pattern…
Approximate Bayesian computation (ABC) refers to a family of inference methods used in the Bayesian analysis of complex models where evaluation of the likelihood is difficult. Conventional ABC methods often suffer from the curse of dimensionality, and a marginal adjustment strategy was recently introduced in the literature to improve the performance of ABC algorithms in high-dimensional problems. The marginal adjustment approach is extended using a Gaussian copula approximation. The method first estimates the bivariate posterior for each pair of parameters separately using a 2-dimensional Gaus…
We consider the problem of modeling multivariate time series with parsimonious dynamical models which can be represented as sparse dynamic Bayesian networks with few latent nodes. This structure translates into a sparse plus low rank model. In this paper, we propose a Gaussian regression approach to identify such a model.
Bridging disconnected networks of first and second lines of biologic therapies in rheumatoid arthritis with registry data: Bayesian evidence synthesis with target trial emulation
In this paper we propose a new adaptive wavelet denoising methodology using complex wavelets. The method is based on a fully Bayesian hierarchical model in the complex wavelet domain that uses a bivariate mixture prior on the wavelet coefficients. The heart of the procedure is computational, where the posterior mean is computed through Markov chain Monte Carlo (MCMC) simulations. We show that the method has good performance, as demonstrated by simulations on the well-known test functions and by comparison to a well-established complex wavelet-based denoising procedure. An application to real-l…
We perform a Bayesian analysis of the p-variate skew-t model, providing a new parameterization, a set of non-informative priors and a sampler specifically designed to explore the posterior density of the model parameters. Extensions, such as the multivariate regression model with skewed errors and the stochastic frontiers model, are easily accommodated. A novelty introduced in the paper is given by the extension of the bivariate skew-normal model given in Liseo & Parisi (2013) to a more realistic p-variate skew-t model. We also introduce the R package mvst, which allows to estimate the multiva…
For two vast families of mixture distributions and a given prior, we provide unified representations of posterior and predictive distributions. Model applications presented include bivariate mixtures of Gamma distributions labelled as Kibble-type, non-central Chi-square and F distributions, the distribution of $R^2$ in multiple regression, variance mixture of normal distributions, and mixtures of location-scale exponential distributions including the multivariate Lomax distribution. An emphasis is also placed on analytical representations and the relationships with a host of existing distribut…
Latent autoregressive processes are a popular choice to model time varying parameters. These models can be formulated as nonlinear state space models for which inference is not straightforward due to the high number of parameters. Therefore maximum likelihood methods are often infeasible and researchers rely on alternative techniques, such as Gibbs sampling. But conventional Gibbs samplers are often tailored to specific situations and suffer from high autocorrelation among repeated draws. We present a Gibbs sampler for general nonlinear state space models with an univariate autoregressive stat…
Toward Joint Prediction of a Longitudinal Marker and a Terminal Event: A bivariate discrete-time framework
Harvard T.H. Chan School of Public Health（哈佛陈曾熙公共卫生学院）；Richard A. and Susan F. Smith Center for Outcomes Research, Beth Israel Deaconess Medical Center（贝斯以色列女执事医疗中心理查德·A和苏珊·F史密斯结果研究中心）；Massachusetts General Hospital（麻省总医院）；Harvard Medical School（哈佛医学院）
Disease maps are an important tool in cancer epidemiology used for the analysis of geographical variations in disease rates and the investigation of environmental risk factors underlying spatial patterns. Cancer maps help epidemiologists highlight geographic areas with high and low prevalence, incidence, or mortality rates of cancers, and the variability of such rates over a spatial domain. When more than one cancer is of interest, the models must also capture the inherent or endemic association between the diseases in addition to the spatial association. This article develops interpretable an…
