Likelihood-free approaches are appealing for performing inference on complex dependence models, either because it is not possible to formulate a likelihood function, or its evaluation is very computationally costly. This is the case for several models available in the multivariate extremes literature, particularly for the most flexible tail models, including those that interpolate between the two key dependence classes of `asymptotic dependence' and `asymptotic independence'. We focus on approaches that leverage neural networks to approximate Bayes estimators. In particular, we explore the properties of neural Bayes estimators for parameter inference for several flexible but computationally expensive models to fit, with a view to aiding their routine implementation. Owing to the absence of likelihood evaluation in the inference procedure, classical information criteria such as the Bayesian information criterion cannot be used to select the most appropriate model. Instead, we propose using neural networks as neural Bayes classifiers for model selection. Our goal is to provide a toolbox for simple, fast fitting and comparison of complex extreme-value dependence models, where the best model is selected for a given data set and its parameters subsequently estimated using neural Bayes estimation. We apply our classifiers and estimators to analyse the pairwise extremal behaviour of changes in horizontal geomagnetic field fluctuations at three different locations.
It is often of interest to combine available estimates of a similar quantity from multiple data sources. When the corresponding variances of each estimate are also available, a model should take into account the uncertainty of the estimates themselves as well as the uncertainty in the estimation of variances. In addition, if there exists a strong association between estimates and their variances, the correlation between these two quantities should also be considered. In this paper, we propose a bivariate hierarchical Bayesian model that jointly models the estimates and their estimated variance…
This paper provides bayesian analysis of singular Marshall-Olkin bivariate Pareto distribution. We consider three parameter singular Marshall-Olkin bivariate Pareto distribution. We consider two types of prior - reference prior and gamma prior. Bayes estimate of the parameters are calculated based on slice cum gibbs sampler and Lindley approximation. Credible interval is also provided for all methods and all prior distributions. A data analysis is kept for illustrative purpose.
Bivariate count data arise in several different disciplines (epidemiology, marketing, sports statistics, etc., to name but a few) and the bivariate Poisson distribution which is a generalization of the Poisson distribution plays an important role in modeling such data. In this article, we consider the inferential aspect of a bivariate Poisson conditionals distribution for which both the conditionals are Poisson but the marginals are typically non-Poisson. It has Poisson marginals only in the case of independence. It appears that a simple iterative procedure under the maximum likelihood method …
This paper provides two different novel approaches of slice sampling to estimate the parameters of absolute continuous Marshall-Olkin bivariate Pareto distribution with location and scale parameters. We carry out the bayesian analysis taking gamma prior for shape and scale parameters and truncated normal for location parameters. Credible intervals and coverage probabilities are also provided for all methods. A real-life data analysis is shown for illustrative purpose.
Several bivariate beta distributions have been proposed in the literature. In particular, Olkin and Liu (2003) proposed a 3 parameter bivariate beta model, which Arnold and Ng (2011) extend to 5 and 8 parameter models. The 3 parameter model allows for only positive correlation, while the latter models can accommodate both positive and negative correlation. However, these come at the expense of a density that is mathematically intractable. The focus of this research is on Bayesian estimation for the 5 and 8 parameter models. Since the likelihood does not exist in closed form, we apply approxima…
We consider nonparametric inference for event time distributions based on current status data. We show that in this scenario conventional mixture priors, including the popular Dirichlet process mixture prior, lead to biologically uninterpretable results as they unnaturally skew the probability mass for the event times toward the extremes of the observed data. Simple assumptions on dependent censoring can fix the problem. We then extend the discussion to bivariate current status data with partial ordering of the two outcomes. In addition to dependent censoring, we also exploit some minimal know…
In a bivariate meta-analysis the number of diagnostic studies involved is often very low so that frequentist methods may result in problems. Bayesian inference is attractive as informative priors that add small amount of information can stabilise the analysis without overwhelming the data. However, Bayesian analysis is often computationally demanding and the selection of the prior for the covariance matrix of the bivariate structure is crucial with little data. The integrated nested Laplace approximations (INLA) method provides an efficient solution to the computational issues by avoiding any …
This paper introduces the \proglang{R} package \pkg{meta4diag} for implementing Bayesian bivariate meta-analyses of diagnostic test studies. Our package \pkg{meta4diag} is a purpose-built front end of the \proglang{R} package \pkg{INLA}. While \pkg{INLA} offers full Bayesian inference for the large set of latent Gaussian models using integrated nested Laplace approximations, \pkg{meta4diag} extracts the features needed for bivariate meta-analysis and presents them in an intuitive way. It allows the user a straightforward model-specification and offers user-specific prior distributions. Further…
Subgroup analysis is a frequently used tool for evaluating heterogeneity of treatment effect and heterogeneity in treatment harm across observed baseline patient characteristics. While treatment efficacy and adverse event measures are often reported separately for each subgroup, analyzing their within-subgroup joint distribution is critical for better informed patient decision-making. In this paper, we describe Bayesian models for performing a subgroup analysis to compare the joint occurrence of a primary endpoint and an adverse event between two treatment arms. Our approaches emphasize estima…
The tail of a bivariate distribution function in the domain of attraction of a bivariate extreme-value distribution may be approximated by the one of its extreme-value attractor. The extreme-value attractor has margins that belong to a three-parameter family and a dependence structure which is characterised by a spectral measure, that is a probability measure on the unit interval with mean equal to one half. As an alternative to parametric modelling of the spectral measure, we propose an infinite-dimensional model which is at the same time manageable and still dense within the class of spectra…
A bivariate distribution with continuous margins can be uniquely decomposed via a copula and its marginal distributions. We consider the problem of estimating the copula function and adopt a Bayesian approach. On the space of copula functions, we construct a finite-dimensional approximation subspace that is parametrized by a doubly stochastic matrix. A major problem here is the selection of a prior distribution on the space of doubly stochastic matrices also known as the Birkhoff polytope. The main contributions of this paper are the derivation of a simple formula for the Jeffreys prior and sh…
Bivariate meta-analysis provides a useful framework for combining information across related studies and has been utilised to combine evidence from clinical studies to evaluate treatment efficacy on two outcomes. It has also been used to investigate surrogacy patterns between treatment effects on the surrogate endpoint and the final outcome. Surrogate endpoints play an important role in drug development when they can be used to measure treatment effect early compared to the final outcome and to predict clinical benefit or harm. The standard bivariate meta-analytic approach models the observed …
In this paper, we describe a Bayesian nonparametric approach to make inference for a bivariate spherically symmetric distribution. We consider a Dirichlet invariant process prior on the set of all bivariate spherically symmetric distributions and we derive the Dirichlet invariant process posterior. Indeed, our approach is an extension of Dirichlet invariant process for the symmetric distributions on the real line to a bivariate spherically symmetric distribution where the underlying distribution is invariant under a finite group of rotations. Moreover, we obtain the Dirichlet invariant process…
In this article, we analyze perinatal data with birth weight (BW) as primarily interesting response variable. Gestational age (GA) is usually an important covariate and included in polynomial form. However, in opposition to this univariate regression, bivariate modeling of BW and GA is recommended to distinguish effects on each, on both, and between them. Rather than a parametric bivariate distribution, we apply conditional copula regression, where marginal distributions of BW and GA (not necessarily of the same form) can be estimated independently, and where the dependence structure is modele…
Civil registration vital statistics (CRVS) data are used to produce national estimates of maternal mortality, but are often subject to substantial reporting errors due to misclassification of maternal deaths. The accuracy of CRVS systems can be assessed by comparing CRVS-based counts of maternal and non-maternal deaths to those obtained from specialized studies, which are rigorous assessments of maternal mortality for a given country-period. We developed a Bayesian bivariate random walk model to estimate sensitivity and specificity of the reporting on maternal mortality in CRVS data, and assoc…
Université du Québec à Montréal（蒙特利尔魁北克大学）；Université de Montréal（蒙特利尔大学）；Université catholique de Louvain（天主教鲁汶大学）
A recommender system based on ranks is proposed, where an expert's ranking of a set of objects and a user's ranking of a subset of those objects are combined to make a prediction of the user's ranking of all objects. The rankings are assumed to be induced by latent continuous variables corresponding to the grades assigned by the expert and the user to the objects. The dependence between the expert and user grades is modelled by a copula in some parametric family. Given a prior distribution on the copula parameter, the user's complete ranking is predicted by the mode of the posterior predictive…
A simple approach for modeling multivariate extremes is to consider the vector of component-wise maxima and their max-stable distributions. The extremal dependence can be inferred by estimating the angular measure or, alternatively, the Pickands dependence function. We propose a nonparametric Bayesian model that allows, in the bivariate case, the simultaneous estimation of both functional representations through the use of polynomials in the Bernstein form. The constraints required to provide a valid extremal dependence are addressed in a straightforward manner, by placing a prior on the coeff…
In this paper, the panel count data analysis for recurrent events is considered. Such analysis is useful for studying tumor or infection recurrences in both clinical trial and observational studies. A bivariate Gaussian Cox process model is proposed to jointly model the observation process and the recurrent event process. Bayesian nonparametric inference is proposed for simultaneously estimating regression parameters, bivariate frailty effects and baseline intensity functions. Inference is done through Markov chain Monte Carlo, with fully developed computational techniques. Predictive inferenc…
This article focuses on the estimation and design aspects of a bivariate collocated cokriging experiment. For a large class of covariance matrices, a linear dependency criterion is identified, which allows the best linear unbiased estimator of the primary variable in a bivariate collocated cokriging setup to reduce to a univariate kriging estimator. Exact optimal designs for efficient prediction for such simple and ordinary reduced cokriging models with one-dimensional inputs are determined. Designs are found by minimizing the maximum and the integrated prediction variance, where the primary v…
Study of the bivariate normal distribution raises the full range of issues involving objective Bayesian inference, including the different types of objective priors (e.g., Jeffreys, invariant, reference, matching), the different modes of inference (e.g., Bayesian, frequentist, fiducial) and the criteria involved in deciding on optimal objective priors (e.g., ease of computation, frequentist performance, marginalization paradoxes). Summary recommendations as to optimal objective priors are made for a variety of inferences involving the bivariate normal distribution. In the course of the investi…
Statistical extreme value theory is concerned with the use of asymptotically motivated models to describe the extreme values of a process. A number of commonly used models are valid for observed data that exceed some high threshold. However, in practice a suitable threshold is unknown and must be determined for each analysis. While there are many threshold selection methods for univariate extremes, there are relatively few that can be applied in the multivariate setting. In addition, there are only a few Bayesian-based methods, which are naturally attractive in the modelling of extremes due to…
The cluster-weighted model (CWM) is a mixture model with random covariates which allows for flexible clustering and density estimation of a random vector composed by a response variable and by a set of covariates. In this class of models, the generalized linear exponential CWM is here introduced especially for modeling bivariate data of mixed-type. Its natural counterpart, in the family of latent class models, is also defined. Maximum likelihood parameter estimates are derived using the EM algorithm and model selection is carried out using the Bayesian information criterion (BIC). Artificial a…
Model-based geostatistical design involves the selection of locations to collect data to minimise an expected loss function over a set of all possible locations. The loss function is specified to reflect the aim of data collection, which, for geostatistical studies, could be to minimise the prediction uncertainty at unobserved locations. In this paper, we propose a new approach to design such studies via a loss function derived through considering the entropy about the model predictions and the parameters of the model. The approach also includes a multivariate extension to generalised linear s…
Statistical analyses of directional or angular data have applications in a variety of fields, such as geology, meteorology and bioinformatics. There is substantial literature on descriptive and inferential techniques for univariate angular data, with the bivariate (or more generally, multivariate) cases receiving more attention in recent years. More specifically, the bivariate wrapped normal, von Mises sine and von Mises cosine distributions, and mixtures thereof, have been proposed for practical use. However, there is a lack of software implementing these distributions and the associated infe…
In the multivariate setting, estimates of extremal risk measures are important in many contexts, such as environmental planning and structural engineering. In this paper, we propose new estimation methods for extremal bivariate return curves, a risk measure that is the natural bivariate extension to a return level. Unlike several existing techniques, our estimates are based on bivariate extreme value models that can capture both key forms of extremal dependence. We devise tools for validating return curve estimates, as well as representing their uncertainty, and compare a selection of curve es…
Copulas allow to learn marginal distributions separately from the multivariate dependence structure (copula) that links them together into a density function. Vine factorizations ease the learning of high-dimensional copulas by constructing a hierarchy of conditional bivariate copulas. However, to simplify inference, it is common to assume that each of these conditional bivariate copulas is independent from its conditioning variables. In this paper, we relax this assumption by discovering the latent functions that specify the shape of a conditional copula given its conditioning variables We le…
To address the need for efficient inference for a range of hydrological extreme value problems, spatial pooling of information is the standard approach for marginal tail estimation. We propose the first extreme value spatial clustering methods which account for both the similarity of the marginal tails and the spatial dependence structure of the data to determine the appropriate level of pooling. Spatial dependence is incorporated in two ways: to determine the cluster selection and to account for dependence of the data over sites within a cluster when making the marginal inference. We introduc…
In this paper we propose a new adaptive wavelet denoising methodology using complex wavelets. The method is based on a fully Bayesian hierarchical model in the complex wavelet domain that uses a bivariate mixture prior on the wavelet coefficients. The heart of the procedure is computational, where the posterior mean is computed through Markov chain Monte Carlo (MCMC) simulations. We show that the method has good performance, as demonstrated by simulations on the well-known test functions and by comparison to a well-established complex wavelet-based denoising procedure. An application to real-l…
Remote, bivariate expert elicitation to determine the prior probability distribution for sample size calculation in a Bayesian non-inferiority multicenter randomized controlled trial (Croup Dosing Trial)
The modelling of empirically observed data is commonly done using mixtures of probability distributions. In order to model angular data, directional probability distributions such as the bivariate von Mises (BVM) is typically used. The critical task involved in mixture modelling is to determine the optimal number of component probability distributions. We employ the Bayesian information-theoretic principle of minimum message length (MML) to distinguish mixture models by balancing the trade-off between the model's complexity and its goodness-of-fit to the data. We consider the problem of modell…
Toward Joint Prediction of a Longitudinal Marker and a Terminal Event: A bivariate discrete-time framework
Harvard T.H. Chan School of Public Health（哈佛陈曾熙公共卫生学院）；Richard A. and Susan F. Smith Center for Outcomes Research, Beth Israel Deaconess Medical Center（贝斯以色列女执事医疗中心理查德·A和苏珊·F史密斯结果研究中心）；Massachusetts General Hospital（麻省总医院）；Harvard Medical School（哈佛医学院）
The bivariate normal density with unit variance and correlation $ρ$ is well-known. We show that by integrating out $ρ$, the result is a function of the maximum norm. The Bayesian interpretation of this result is that if we put a uniform prior over $ρ$, then the marginal bivariate density depends only on the maximal magnitude of the variables. The square-shaped isodensity contour of this resulting marginal bivariate density can also be regarded as the equally-weighted mixture of bivariate normal distributions over all possible correlation coefficients. This density links to the Khintchine mixtu…
Both marginal and dependence features must be described when modelling the extremes of a stationary time series. There are standard approaches to marginal modelling, but long- and short-range dependence of extremes may both appear. In applications, an assumption of long-range independence often seems reasonable, but short-range dependence, i.e., the clustering of extremes, needs attention. The extremal index $0<θ\le 1$ is a natural limiting measure of clustering, but for wide classes of dependent processes, including all stationary Gaussian processes, it cannot distinguish dependent processes …
Based on a novel dynamic Whittle likelihood approximation for locally stationary processes, a Bayesian nonparametric approach to estimating the time-varying spectral density is proposed. This dynamic frequency-domain based likelihood approximation is able to depict the time-frequency evolution of the process by utilizing the moving periodogram previously introduced in the bootstrap literature. The posterior distribution is obtained by updating a bivariate extension of the Bernstein-Dirichlet process prior with the dynamic Whittle likelihood. Asymptotic properties such as sup-norm posterior con…
This paper develops some objective priors for certain parameters of the bivariate normal distribution. The parameters considered are the regression coefficient, the generalized variance, and the ratio of the conditional variance of one variable given the other to the marginal variance of the other variable. The criterion used is the asymptotic matching of coverage probabilities of Bayesian credible intervals with the corresponding frequentist coverage probabilities. The paper uses various matching criteria, namely, quantile matching, matching of distribution functions, highest posterior densit…
Forecast ensembles are typically employed to account for prediction uncertainties in numerical weather prediction models. However, ensembles often exhibit biases and dispersion errors, thus they require statistical post-processing to improve their predictive performance. Two popular univariate post-processing models are the Bayesian model averaging (BMA) and the ensemble model output statistics (EMOS). In the last few years increased interest has emerged in developing multivariate post-processing models, incorporating dependencies between weather quantities, such as for example a bivariate dis…
Estimation of extreme quantile regions, spaces in which future extreme events can occur with a given low probability, even beyond the range of the observed data, is an important task in the analysis of extremes. Existing methods to estimate such regions are available, but do not provide any measures of estimation uncertainty. We develop univariate and bivariate schemes for estimating extreme quantile regions under the Bayesian paradigm that outperforms existing approaches and provides natural measures of quantile region estimate uncertainty. We examine the method's performance in controlled si…
This study extends the Bayesian nonparametric instrumental variable regression model to determine the structural effects of covariates on the conditional quantile of the response variable. The error distribution is nonparametrically modelled using a Dirichlet mixture of bivariate normal distributions. The mean functions include the smooth effects of the covariates represented using the spline functions in an additive manner. The conditional variance of the second-stage error is also modelled using the spline functions such that it varies smoothly with the covariates. Accordingly, the proposed …
The truncated plurigaussian model is often used to simulate the spatial distribution of random categorical variables such as geological facies. The problems addressed in this paper are the estimation of parameters of the truncation map for the truncated plurigaussian model. Unlike standard truncation maps, in this paper a colored Voronoi tessellation with number of nodes, locations of nodes, and category associated with each node all treated as unknowns in the optimization. Parameters were adjusted to match categorical bivariate unit-lag probabilities, which were obtained from a larger pattern…
This paper discusses the efficient Bayesian estimation of a multivariate factor stochastic volatility (Factor MSV) model with leverage. We propose a novel approach to construct the sampling schemes that converges to the posterior distribution of the latent volatilities and the parameters of interest of the Factor MSV model based on recent advances in Particle Markov chain Monte Carlo (PMCMC). As opposed to the approach of Chib et al. (2006} and Omori et al. (2007}, our approach does not require approximating the joint distribution of outcome and volatility innovations by a mixture of bivariate…
Estimating the limiting shape of bivariate scaled sample clouds: with additional benefits of self-consistent inference for existing extremal dependence properties
Describing the complex dependence structure of extreme phenomena is particularly challenging. To tackle this issue we develop a novel statistical algorithm that describes extremal dependence taking advantage of the inherent hierarchical dependence structure of the max-stable nested logistic distribution and that identifies possible clusters of extreme variables using reversible jump Markov chain Monte Carlo techniques. Parsimonious representations are achieved when clusters of extreme variables are found to be completely independent. Moreover, we significantly decrease the computational comple…
In this paper, a multivariate count distribution with Conway-Maxwell (COM)-Poisson marginals is proposed. To do this, we develop a modification of the Sarmanov method for constructing multivariate distributions. Our multivariate COM-Poisson (MultCOMP) model has desirable features such as (i) it admits a flexible covariance matrix allowing for both negative and positive non-diagonal entries; (ii) it overcomes the limitation of the existing bivariate COM-Poisson distributions in the literature that do not have COM-Poisson marginals; (iii) it allows for the analysis of multivariate counts and is …
Analysis of competing risks data plays an important role in the lifetime data analysis. Recently Feizjavadian and Hashemi (Computational Statistics and Data Analysis, vol. 82, 19-34, 2015) provided a classical inference of a competing risks data set using four-parameter Marshall-Olkin bivariate Weibull distribution when the failure of an unit at a particular time point can happen due to more than one cause. The aim of this paper is to provide the Bayesian analysis of the same model based on a very flexible Gamma-Dirichlet prior on the scale parameters. It is observed that the Bayesian inferenc…
