Clustering is a well-known and important problem with numerous applications. The graph-based model is one of the typical cluster models. In the graph model, clusters are generally defined as cliques. However, such an approach might be too restrictive as in some applications, not all objects from the same cluster must be connected. That is why different types of cliques relaxations often considered as clusters.
In our work, we consider a problem of partitioning graph into clusters and a problem of isolating cluster of a special type whereby cluster we mean highly connected subgraph. Initially, such clusterization was proposed by Hartuv and Shamir. And their HCS clustering algorithm was extensively applied in practice. It was used to cluster cDNA fingerprints, to find complexes in protein-protein interaction data, to group protein sequences hierarchically into superfamily and family clusters, to find families of regulatory RNA structures. The HCS algorithm partitions graph in highly connected subgraphs. However, it is achieved by deletion of not necessarily the minimum number of edges. In our work, we try to minimize the number of edge deletions. We consider problems from the parameterized point of view where the main parameter is a number of allowed edge deletions.
We study a broad class of graph partitioning problems, where each problem is specified by a graph $G=(V,E)$, and parameters $k$ and $p$. We seek a subset $U\subseteq V$ of size $k$, such that $α_1m_1 + α_2m_2$ is at most (or at least) $p$, where $α_1,α_2\in\mathbb{R}$ are constants defining the problem, and $m_1, m_2$ are the cardinalities of the edge sets having both endpoints, and exactly one endpoint, in $U$, respectively. This class of fixed cardinality graph partitioning problems (FGPP) encompasses Max $(k,n-k)$-Cut, Min $k$-Vertex Cover, $k$-Densest Subgraph, and $k$-Sparsest Subgraph. O…
Given an undirected graph $G$ and $q$ integers $n_1,n_2,n_3, \cdots, n_q$, balanced connected $q$-partition problem ($BCP_q$) asks whether there exists a partition of the vertex set $V$ of $G$ into $q$ parts $V_1,V_2,V_3,\cdots, V_q$ such that for all $i\in[1,q]$, $|V_i|=n_i$ and the graph induced on $V_i$ is connected. A related problem denoted as the balanced connected $q$-edge partition problem ($BCEP_q$) is defined as follows. Given an undirected graph $G$ and $q$ integers $n_1,n_2,n_3, \cdots, n_q$, $BCEP_q$ asks whether there exists a partition of the edge set of $G$ into $q$ parts $E_1,…
In this article we will present a graph partitioning algorithm which partitions a graph into two different types of components: the well-known `strongly connected components' as well as another type of components we call `connected acyclic component'. We will give an algorithm based on Tarjan's algorithm for finding strongly connected components used to find such a partitioning. We will also show that the partitioning given by the algorithm is unique and that the underlying graph can be represented as a directed acyclic graph (similar to a pure strongly connected component partitioning). In th…
Many NP-hard problems, such as Dominating Set, are FPT parameterized by clique-width. For graphs of clique-width $k$ given with a $k$-expression, Dominating Set can be solved in $4^k n^{O(1)}$ time. However, no FPT algorithm is known for computing an optimal $k$-expression. For a graph of clique-width $k$, if we rely on known algorithms to compute a $(2^{3k}-1)$-expression via rank-width and then solving Dominating Set using the $(2^{3k}-1)$-expression, the above algorithm will only give a runtime of $4^{2^{3k}} n^{O(1)}$. There have been results which overcome this exponential jump; the best …
We study fundamental clustering problems for incomplete data. Specifically, given a set of incomplete d-dimensional vectors (representing rows of a matrix), the goal is to complete the missing vector entries in a way that admits a partitioning of the vectors into at most $k$ clusters with radius or diameter at most r. We give tight characterizations of the parameterized complexity of these problems with respect to the parameters k, r, and the minimum number of rows and columns needed to cover all the missing entries. We show that the considered problems are fixed-parameter tractable when param…
We introduce and study two natural generalizations of the Connected VertexCover (VC) problem: the $p$-Edge-Connected and $p$-Vertex-Connected VC problem (where $p \geq 2$ is a fixed integer). Like Connected VC, both new VC problems are FPT, but do not admit a polynomial kernel unless $NP \subseteq coNP/poly$, which is highly unlikely. We prove however that both problems admit time efficient polynomial sized approximate kernelization schemes. We obtain an $O(2^{O(pk)}n^{O(1)})$-time algorithm for the $p$-Edge-Connected VC and an $O(2^{O(k^2)}n^{O(1)})$-time algorithm for the $p$-Vertex-Connecte…
We develop efficient parameterized, with additive error, approximation algorithms for the (Connected) $r$-Domination problem and the (Connected) $p$-Center problem for unweighted and undirected graphs. Given a graph $G$, we show how to construct a (connected) $\big(r + \mathcal{O}(μ) \big)$-dominating set $D$ with $|D| \leq |D^*|$ efficiently. Here, $D^*$ is a minimum (connected) $r$-dominating set of $G$ and $μ$ is our graph parameter, which is the tree-breadth or the cluster diameter in a layering partition of $G$. Additionally, we show that a $+ \mathcal{O}(μ)$-approximation for the (Connec…
A graph $G$ is $k$-out-connected from its node $s$ if it contains $k$ internally disjoint $sv$-paths to every node $v$; $G$ is $k$-connected if it is $k$-out-connected from every node. In connectivity augmentation problems the goal is to augment a graph $G_0=(V,E_0)$ by a minimum costs edge set $J$ such that $G_0 \cup J$ has higher connectivity than $G_0$. In the $k$-Out-Connectivity Augmentation ($k$-OCA) problem, $G_0$ is $(k-1)$-out-connected from $s$ and $G_0 \cup J$ should be $k$-out-connected from $s$; in the $k$-Connectivity Augmentation ($k$-CA) problem $G_0$ is $(k-1)$-connected and $…
In the Connected Vertex Cover problem we are given an undirected graph G together with an integer k and we are to find a subset of vertices X of size at most k, such that X contains at least one end-point of each edge and moreover X induces a connected subgraph. For this problem we present a deterministic algorithm running in O(2^k n^O(1)) time and polynomial space, improving over previously best O(2.4882^k n^O(1)) deterministic algorithm and O(2^k n^O(1)) randomized algorithm. Furthermore, when usage of exponential space is allowed, we present an O(2^k k(n+m)) time algorithm that solves a mor…
We present a new combinatorial model for identifying regulatory modules in gene co-expression data using a decomposition into weighted cliques. To capture complex interaction effects, we generalize the previously-studied weighted edge clique partition problem. As a first step, we restrict ourselves to the noise-free setting, and show that the problem is fixed parameter tractable when parameterized by the number of modules (cliques). We present two new algorithms for finding these decompositions, using linear programming and integer partitioning to determine the clique weights. Further, we impl…
We study the recently introduced Connected Feedback Vertex Set (CFVS) problem from the view-point of parameterized algorithms. CFVS is the connected variant of the classical Feedback Vertex Set problem and is defined as follows: given a graph G=(V,E) and an integer k, decide whether there exists a subset F of V, of size at most k, such that G[V F] is a forest and G[F] is connected. We show that Connected Feedback Vertex Set can be solved in time $O(2^{O(k)}n^{O(1)})$ on general graphs and in time $O(2^{O(\sqrt{k}\log k)}n^{O(1)})$ on graphs excluding a fixed graph H as a minor. Our result on g…
Graph Burning asks, given a graph $G = (V,E)$ and an integer $k$, whether there exists $(b_{0},\dots,b_{k-1}) \in V^{k}$ such that every vertex in $G$ has distance at most $i$ from some $b_{i}$. This problem is known to be NP-complete even on connected caterpillars of maximum degree $3$. We study the parameterized complexity of this problem and answer all questions arose by Kare and Reddy [IWOCA 2019] about parameterized complexity of the problem. We show that the problem is W[2]-complete parameterized by $k$ and that it does no admit a polynomial kernel parameterized by vertex cover number un…
We introduce and study the Doubly Balanced Connected graph Partitioning (DBCP) problem: Let $G=(V,E)$ be a connected graph with a weight (supply/demand) function $p:V\rightarrow \{-1,+1\}$ satisfying $p(V)=\sum_{j\in V} p(j)=0$. The objective is to partition $G$ into $(V_1,V_2)$ such that $G[V_1]$ and $G[V_2]$ are connected, $|p(V_1)|,|p(V_2)|\leq c_p$, and $\max\{\frac{|V_1|}{|V_2|},\frac{|V_2|}{|V_1|}\}\leq c_s$, for some constants $c_p$ and $c_s$. When $G$ is 2-connected, we show that a solution with $c_p=1$ and $c_s=3$ always exists and can be found in polynomial time. Moreover, when $G$ i…
We investigate parameterized algorithms for the NP-hard problem Min-Power Asymmetric Connectivity (MinPAC) that has applications in wireless sensor networks. Given a directed arc-weighted graph, MinPAC asks for a strongly connected spanning subgraph minimizing the summed vertex costs. Here, the cost of each vertex is the weight of its heaviest outgoing arc in the chosen subgraph. We present linear-time algorithms for the cases where the number of strongly connected components in a so-called obligatory subgraph or the feedback edge number in the underlying undirected graph is constant. Compleme…
The complexity of problems involving global constraints is usually much more difficult to understand than the complexity of problems only involving local constraints. A natural form of global constraints are connectivity constraints. We study connectivity problems from a fine-grained parameterized perspective. In a breakthrough, Cygan et al. (TALG 2022) first obtained algorithms with single-exponential running time c^{tw} n^O(1) for connectivity problems parameterized by treewidth by introducing the cut-and-count-technique. Furthermore, the obtained bases c were shown to be optimal under the S…
In this work we start the investigation of tight complexity bounds for connectivity problems parameterized by cutwidth assuming the Strong Exponential-Time Hypothesis (SETH). Van Geffen et al. posed this question for odd cycle transversal and feedback vertex set. We answer it for these two and four further problems, namely connected vertex cover, connected domintaing set, steiner tree, and connected odd cycle transversal. For the latter two problems it sufficed to prove lower bounds that match the running time inherited from parameterization by treewidth; for the others we provide faster algor…
The Directed Rural Postman Problem (DRPP) can be formulated as follows: given a strongly connected directed multigraph $D=(V,A)$ with nonnegative integral weights on the arcs, a subset $R$ of $A$ and a nonnegative integer $\ell$, decide whether $D$ has a closed directed walk containing every arc of $R$ and of total weight at most $\ell$. Let $k$ be the number of weakly connected components in the the subgraph of $D$ induced by $R$. Sorge et al. (2012) ask whether the DRPP is fixed-parameter tractable (FPT) when parameterized by $k$, i.e., whether there is an algorithm of running time $O^*(f(k)…
Shifted combinatorial optimization is a new nonlinear optimization framework which is a broad extension of standard combinatorial optimization, involving the choice of several feasible solutions at a time. This framework captures well studied and diverse problems ranging from so-called vulnerability problems to sharing and partitioning problems. In particular, every standard combinatorial optimization problem has its shifted counterpart, which is typically much harder. Already with explicitly given input set the shifted problem may be NP-hard. In this article we initiate a study of the paramet…
The quest for colorful components (connected components where each color is associated with at most one vertex) inside a vertex-colored graph has been widely considered in the last ten years. Here we consider two variants, Minimum Colorful Components (MCC) and Maximum Edges in transitive Closure (MEC), introduced in 2011 in the context of orthology gene identification in bioinformatics. The input of both MCC and MEC is a vertex-colored graph. MCC asks for the removal of a subset of edges, so that the resulting graph is partitioned in the minimum number of colorful connected components; MEC ask…
In the Cluster Vertex Deletion problem the input is a graph $G$ and an integer $k$. The goal is to decide whether there is a set of vertices $S$ of size at most $k$ such that the deletion of the vertices of $S$ from $G$ results a graph in which every connected component is a clique. We give an algorithm for Cluster Vertex Deletion whose running time is $O^*(1.811^k)$.
Partitioning a connected graph into $k$~vertex-disjoint connected subgraphs of similar (or given) orders is a classical problem that has been intensively investigated since late seventies. Given a connected graph $G=(V,E)$ and a weight function $w : V \to \mathbb{Q}_\geq$, a connected $k$-partition of $G$ is a partition of $V$ such that each class induces a connected subgraph. The balanced connected $k$-partition problem consists in finding a connected $k$-partition in which every class has roughly the same weight. To model this concept of balance, one may seek connected $k$-partitions that ei…
A breakthrough result of Cygan et al. (FOCS 2011) showed that connectivity problems parameterized by treewidth can be solved much faster than the previously best known time $\mathcal{O}^*(2^{\mathcal{O}(tw \log(tw))})$. Using their inspired Cut\&Count technique, they obtained $\mathcal{O}^*(α^{tw})$ time algorithms for many such problems. Moreover, they proved these running times to be optimal assuming the Strong Exponential-Time Hypothesis. Unfortunately, like other dynamic programming algorithms on tree decompositions, these algorithms also require exponential space, and this is widely belie…
For a connected graph $G = (V, E)$ and $s, t \in V$, a non-separating $s$-$t$ path is a path $P$ between $s$ and $t$ such that the set of vertices of $P$ does not separate $G$, that is, $G - V(P)$ is connected. An $s$-$t$ path is non-disconnecting if $G - E(P)$ is connected. The problems of finding shortest non-separating and non-disconnecting paths are both known to be NP-hard. In this paper, we consider the problems from the viewpoint of parameterized complexity. We show that the problem of finding a non-separating $s$-$t$ path of length at most $k$ is W[1]-hard parameterized by $k$, while t…
A dominating set $S$ of graph $G$ is called an $r$-grouped dominating set if $S$ can be partitioned into $S_1,S_2,\ldots,S_k$ such that the size of each unit $S_i$ is $r$ and the subgraph of $G$ induced by $S_i$ is connected. The concept of $r$-grouped dominating sets generalizes several well-studied variants of dominating sets with requirements for connected component sizes, such as the ordinary dominating sets ($r=1$), paired dominating sets ($r=2$), and connected dominating sets ($r$ is arbitrary and $k=1$). In this paper, we investigate the computational complexity of $r$-Grouped Dominatin…
A tournament is a directed graph T such that every pair of vertices are connected by an arc. A feedback vertex set is a set S of vertices in T such that T - S is acyclic. In this article we consider the Feedback Vertex Set problem in tournaments. Here input is a tournament T and integer k, and the task is to determine whether T has a feedback vertex set of size at most k. We give a new algorithm for Feedback Vertex Set in Tournaments. The running time of our algorithm is upper bounded by O(1.618^k + n^{O(1)}) and by O(1.46^n). Thus our algorithm simultaneously improves over the fastest known p…
In a reconfiguration version of an optimization problem $\mathcal{Q}$ the input is an instance of $\mathcal{Q}$ and two feasible solutions $S$ and $T$. The objective is to determine whether there exists a step-by-step transformation between $S$ and $T$ such that all intermediate steps also constitute feasible solutions. In this work, we study the parameterized complexity of the \textsc{Connected Dominating Set Reconfiguration} problem (\textsc{CDS-R)}. It was shown in previous work that the \textsc{Dominating Set Reconfiguration} problem (\textsc{DS-R}) parameterized by $k$, the maximum allowe…
A circle graph is the intersection graph of a set of chords in a circle. Keil [Discrete Applied Mathematics, 42(1):51-63, 1993] proved that Dominating Set, Connected Dominating Set, and Total Dominating Set are NP-complete in circle graphs. To the best of our knowledge, nothing was known about the parameterized complexity of these problems in circle graphs. In this paper we prove the following results, which contribute in this direction: - Dominating Set, Independent Dominating Set, Connected Dominating Set, Total Dominating Set, and Acyclic Dominating Set are W[1]-hard in circle graphs, param…
We study a variant of Min Cost Flow in which the flow needs to be connected. Specifically, in the Connected Flow problem one is given a directed graph $G$, along with a set of demand vertices $D \subseteq V(G)$ with demands $\mathsf{dem}: D \rightarrow \mathbb{N}$, and costs and capacities for each edge. The goal is to find a minimum cost flow that satisfies the demands, respects the capacities and induces a (strongly) connected subgraph. This generalizes previously studied problems like the (Many Visits) TSP. We study the parameterized complexity of Connected Flow parameterized by $|D|$, the …
Let $S=\{K_{1,3},K_3,P_4\}$ be the set of connected graphs of size 3. We study the problem of partitioning the edge set of a graph $G$ into graphs taken from any non-empty $S'\subseteq S$. The problem is known to be NP-complete for any possible choice of $S'$ in general graphs. In this paper, we assume that the input graph is cubic, and study the computational complexity of the problem of partitioning its edge set for any choice of $S'$. We identify all polynomial and NP-complete problems in that setting, and give graph-theoretic characterisations of $S'$-decomposable cubic graphs in some case…
We study two variants of \textsc{Maximum Cut}, which we call \textsc{Connected Maximum Cut} and \textsc{Maximum Minimal Cut}, in this paper. In these problems, given an unweighted graph, the goal is to compute a maximum cut satisfying some connectivity requirements. Both problems are known to be NP-complete even on planar graphs whereas \textsc{Maximum Cut} on planar graphs is solvable in polynomial time. We first show that these problems are NP-complete even on planar bipartite graphs and split graphs. Then we give parameterized algorithms using graph parameters such as clique-width, tree-wid…
Problems related to finding induced subgraphs satisfying given properties form one of the most studied areas within graph algorithms. Such problems have given rise to breakthrough results and led to development of new techniques both within the traditional P vs NP dichotomy and within parameterized complexity. The Π-Subgraph problem asks whether an input graph contains an induced subgraph on at least k vertices satisfying graph property Π. For many applications, it is desirable that the found subgraph has as few connections to the rest of the graph as possible, which gives rise to the Secluded…
The balanced hypergraph partitioning problem is to partition a hypergraph into $k$ disjoint blocks of bounded size such that the sum of the number of blocks connected by each hyperedge is minimized. We present an improvement to the flow-based refinement framework of KaHyPar-MF, the current state-of-the-art multilevel $k$-way hypergraph partitioning algorithm for high-quality solutions. Our improvement is based on the recently proposed HyperFlowCutter algorithm for computing bipartitions of unweighted hypergraphs by solving a sequence of incremental maximum flow problems. Since vertices and hyp…
It is known that a number of natural graph problems which are FPT parameterized by treewidth become W-hard when parameterized by clique-width. It is therefore desirable to find a different structural graph parameter which is as general as possible, covers dense graphs but does not incur such a heavy algorithmic penalty. The main contribution of this paper is to consider a parameter called modular-width, defined using the well-known notion of modular decompositions. Using a combination of ILPs and dynamic programming we manage to design FPT algorithms for Coloring and Partitioning into paths (a…
A set $S$ of vertices of a graph is a defensive alliance if, for each element of $S$, the majority of its neighbours is in $S$. We consider the notion of local minimality in this paper. We are interested in locally minimal defensive alliance of maximum size. We also look at connected version of defensive alliance. This problem is known to be NP-hard but its parameterized complexity remains open until now. We enhance our understanding of the problem from the viewpoint of parameterized complexity. The main results of the paper are the following: (1) Locally Minimal Defensive Alliance is NP-compl…
In the Directed $k$-Chinese Postman Problem ($k$-DCPP), we are given a connected weighted digraph $G$ and asked to find $k$ non-empty closed directed walks covering all arcs of $G$ such that the total weight of the walks is minimum. Gutin, Muciaccia and Yeo (Theor. Comput. Sci. 513 (2013) 124--128) asked for the parameterized complexity of $k$-DCPP when $k$ is the parameter. We prove that the $k$-DCPP is fixed-parameter tractable. We also consider a related problem of finding $k$ arc-disjoint directed cycles in an Euler digraph, parameterized by $k$. Slivkins (ESA 2003) showed that this proble…
We prove the following theorem. Given a planar graph $G$ and an integer $k$, it is possible in polynomial time to randomly sample a subset $A$ of vertices of $G$ with the following properties: (i) $A$ induces a subgraph of $G$ of treewidth $\mathcal{O}(\sqrt{k}\log k)$, and (ii) for every connected subgraph $H$ of $G$ on at most $k$ vertices, the probability that $A$ covers the whole vertex set of $H$ is at least $(2^{\mathcal{O}(\sqrt{k}\log^2 k)}\cdot n^{\mathcal{O}(1)})^{-1}$, where $n$ is the number of vertices of $G$. Together with standard dynamic programming techniques for graphs of bou…
We study connectivity problems from a fine-grained parameterized perspective. Cygan et al. (TALG 2022) obtained algorithms with single-exponential running time $α^{tw} n^{O(1)}$ for connectivity problems parameterized by treewidth ($tw$) by introducing the cut-and-count-technique, which reduces connectivity problems to locally checkable counting problems. In addition, the bases $α$ were proven to be optimal assuming the Strong Exponential-Time Hypothesis (SETH). As only sparse graphs may admit small treewidth, these results do not apply to graphs with dense structure. A well-known tool to capt…
We show that the following two problems are fixed-parameter tractable with parameter k: testing whether a connected n-vertex graph with m edges has a square root with at most n-1+k edges and testing whether such a graph has a square root with at least m-k edges. Our first result implies that squares of graphs obtained from trees by adding at most k edges can be recognized in polynomial time for every fixed k>=0; previously this result was known only for k=0. Our second result is equivalent to stating that deciding whether a graph can be modified into a square root of itself by at most k edge d…
The aim of edge editing or modification problems is to change a given graph by adding and deleting of a small number of edges in order to satisfy a certain property. We consider the Edge Editing to a Connected Graph of Given Degrees problem that asks for a graph G, non-negative integers d,k and a function δ:V(G)->{1,...,d}, whether it is possible to obtain a connected graph G' from G such that the degree of v is δ(v) for any vertex v by at most k edge editing operations. As the problem is NP-complete even if δ(v)=2, we are interested in the parameterized complexity and show that Edge Editing t…
A graph vertex-subset problem defines which subsets of the vertices of an input graph are feasible solutions. We view a feasible solution as a set of tokens placed on the vertices of the graph. A reconfiguration variant of a vertex-subset problem asks, given two feasible solutions of size $k$, whether it is possible to transform one into the other by a sequence of token slides (along edges of the graph) or token jumps (between arbitrary vertices of the graph) such that each intermediate set remains a feasible solution of size $k$. Many algorithmic questions present themselves in the form of re…
We extend the notion of lossy kernelization, introduced by Lokshtanov et al. [STOC 2017], to approximate Turing kernelization. An $α$-approximate Turing kernel for a parameterized optimization problem is a polynomial-time algorithm that, when given access to an oracle that outputs $c$-approximate solutions in $O(1)$ time, obtains an $(α\cdot c)$-approximate solution to the considered problem, using calls to the oracle of size at most $f(k)$ for some function $f$ that only depends on the parameter. Using this definition, we show that Independent Set parameterized by treewidth $\ell$ has a $(1+\…
We study the problem Symmetric Directed Multicut from a parameterized complexity perspective. In this problem, the input is a digraph $D$, a set of cut requests $C=\{(s_1,t_1),\ldots,(s_\ell,t_\ell)\}$ and an integer $k$, and the task is to find a set $X \subseteq V(D)$ of size at most $k$ such that for every $1 \leq i \leq \ell$, $X$ intersects either all $(s_i,t_i)$-paths or all $(t_i,s_i)$-paths. Equivalently, every strongly connected component of $D-X$ contains at most one vertex out of $s_i$ and $t_i$ for every $i$. This problem is previously known from research in approximation algorithm…
The Connected Vertex Cover problem, where the goal is to compute a minimum set of vertices in a given graph which forms a vertex cover and induces a connected subgraph, is a fundamental combinatorial problem and has received extensive attention in various subdomains of algorithmics. In the area of kernelization, it is known that this problem is unlikely to have efficient preprocessing algorithms, also known as polynomial kernelizations. However, it has been shown in a recent work of Lokshtanov et al. [STOC 2017] that if one considered an appropriate notion of approximate kernelization, then th…
We study the parameterized complexity of the $s$-Club Cluster Edge Deletion problem: Given a graph $G$ and two integers $s \ge 2$ and $k \ge 1$, is it possible to remove at most $k$ edges from $G$ such that each connected component of the resulting graph has diameter at most $s$? This problem is known to be NP-hard already when $s = 2$. We prove that it admits a fixed-parameter tractable algorithm when parameterized by $s$ and the treewidth of the input graph.
We consider the following natural graph cut problem called Critical Node Cut (CNC): Given a graph $G$ on $n$ vertices, and two positive integers $k$ and $x$, determine whether $G$ has a set of $k$ vertices whose removal leaves $G$ with at most $x$ connected pairs of vertices. We analyze this problem in the framework of parameterized complexity. That is, we are interested in whether or not this problem is solvable in $f(κ) \cdot n^{O(1)}$ time (i.e., whether or not it is fixed-parameter tractable), for various natural parameters $κ$. We consider four such parameters: - The size $k$ of the requi…
Max-cut, clustering, and many other partitioning problems that are of significant importance to machine learning and other scientific fields are NP-hard, a reality that has motivated researchers to develop a wealth of approximation algorithms and heuristics. Although the best algorithm to use typically depends on the specific application domain, a worst-case analysis is often used to compare algorithms. This may be misleading if worst-case instances occur infrequently, and thus there is a demand for optimization methods which return the algorithm configuration best suited for the given applica…
Given a Counting Monadic Second Order (CMSO) sentence $ψ$, the CMSO$[ψ]$ problem is defined as follows. The input to CMSO$[ψ]$ is a graph $G$, and the objective is to determine whether $G\models ψ$. Our main theorem states that for every CMSO sentence $ψ$, if CMSO$[ψ]$ is solvable in polynomial time on "globally highly connected graphs", then CMSO$[ψ]$ is solvable in polynomial time (on general graphs). We demonstrate the utility of our theorem in the design of parameterized algorithms. Specifically we show that technical problem-specific ingredients of a powerful method for designing paramete…
In this paper, we consider different constrained partition problems for weighted trees and cactus graphs. We focus on the (l,u)-partition problem, which is the problem of partitioning a weighted graph into connected clusters such that each cluster fulfills the lower and upper weight constraints l and u. Partitioning into a minimum, maximum or a fixed number of clusters is known to be NP-hard in general, but polynomial-time solvable on trees. We prove that these three variants of the (l,u)-partition problem can be solved for cactus graphs as well by presenting a polynomial-time algorithm. Addit…
A cactus is a connected graph that does not contain $K_4 - e$ as a minor. Given a graph $G = (V, E)$ and integer $k \ge 0$, Cactus Vertex Deletion (also known as Diamond Hitting Set) is the problem of deciding whether $G$ has a vertex set of size at most $k$ whose removal leaves a forest of cacti. The current best deterministic parameterized algorithm for this problem was due to Bonnet et al. [WG 2016], which runs in time $26^kn^{O(1)}$, where $n$ is the number of vertices of $G$. In this paper, we design a deterministic algorithm for Cactus Vertex Deletion, which runs in time $17.64^kn^{O(1)}…
