arXivDaily arXiv每日学术速递 周一至周五更新
arXiv 2410.04461cs.LGq-bio.BM

生物序列设计中改进的离策略强化学习

Improved Off-policy Reinforcement Learning in Biological Sequence Design

Mila - Quebec AI Institute(魁北克人工智能研究所);Valence Labs(Valence实验室)

Hyeonah Kim, Minsu Kim, Taeyoung Yun, Sanghyeok Choi, Emmanuel Bengio, Alex Hernández-García, Jinkyoo Park

AI总结:

针对生物序列设计中代理模型分布外易偏差的问题,提出$δ$-保守搜索的离策略强化学习方法,通过限制探索区域、自适应调整保守度提升鲁棒性,在多类生物序列设计任务中优于现有方法。

摘要:

由于搜索空间巨大且评估预算有限,设计具备理想属性的生物序列颇具挑战。尽管强化学习方法利用代理模型实现快速奖励评估,但训练数据不足会导致代理模型在分布外输入上出现设定偏差。为解决这一问题,我们提出一种新型离策略搜索方法——$δ$-保守搜索,通过将策略探索限制在可靠区域内来提升鲁棒性。我们从高分离线序列出发,以概率$δ$随机掩码token来注入噪声,再利用我们的策略对其去噪。我们还根据每个数据点的代理不确定性调整$δ$,使保守程度与模型置信度相匹配。实验结果表明,我们的保守搜索持续增强了离策略训练效果,在DNA、RNA、蛋白质和多肽设计等多种任务的高分序列发现方面,性能优于现有机器学习方法。

英文摘要:

Designing biological sequences with desired properties is challenging due to vast search spaces and limited evaluation budgets. Although reinforcement learning methods use proxy models for rapid reward evaluation, insufficient training data can cause proxy misspecification on out-of-distribution inputs. To address this, we propose a novel off-policy search, $δ$-Conservative Search, that enhances robustness by restricting policy exploration to reliable regions. Starting from high-score offline sequences, we inject noise by randomly masking tokens with probability $δ$, then denoise them using our policy. We further adapt $δ$ based on proxy uncertainty on each data point, aligning the level of conservativeness with model confidence. Experimental results show that our conservative search consistently enhances the off-policy training, outperforming existing machine learning methods in discovering high-score sequences across diverse tasks, including DNA, RNA, protein, and peptide design.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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