Binary search trees (BSTs) are one of the most basic and widely used data structures. The best static tree for serving a sequence of queries (searches) can be computed by dynamic programming. In contrast, when the BSTs are allowed to be dynamic (i.e. change by rotations between searches), we still do not know how to compute the optimal algorithm (OPT) for a given sequence. One of the candidate algorithms whose serving cost is suspected to be optimal up-to a (multiplicative) constant factor is known by the name Greedy Future (GF). In an equivalent geometric way of representing queries on BSTs, GF is in fact equivalent to another algorithm called Geometric Greedy (GG). Most of the results on GF are obtained using the geometric model and the study of GG. Despite this intensive recent fruitful research, the best lower bound we have on the competitive ratio of GF is $\frac{4}{3}$. Furthermore, it has been conjectured that the additive gap between the cost of GF and OPT is only linear in the number of queries. In this paper we prove a lower bound of $2$ on the competitive ratio of GF, and we prove that the additive gap between the cost of GF and OPT can be $Ω(m \cdot \log\log n)$ where $n$ is the number of items in the tree and $m$ is the number of queries.
A consensus tree is a phylogenetic tree that captures the similarity between a set of conflicting phylogenetic trees. The problem of computing a consensus tree is a major step in phylogenetic tree reconstruction. It also finds applications in predicting a species tree from a set of gene trees. This paper focuses on two of the most well-known and widely used oconsensus tree methods: the greedy consensus tree and the frequency difference consensus tree. Given $k$ conflicting trees each with $n$ leaves, the previous fastest algorithms for these problems were $O(k n^2)$ for the greedy consensus tr…
This short article presents a new implementation for decision trees. By introducing pre-sorted deques, the leaf-wise greedy tree growing strategy no longer needs to re-sort data at each node, and takes O(kn) time and O(1) extra memory locating the best split and branching. The consistent, superior performance - plus its simplicity and guarantee in producing the same classification results as the standard decision trees - makes the new implementation a drop-in replacement for depth-wise tree induction with strong performance.
The Hop-Constrained Steiner Tree problem (HCST) is challenging NP-hard problem arising in the design of centralized telecommunication networks where the reliability constraints matter. In this paper three iterative greedy algorithms are described to find efficient optimized solution to solve HCST on both sparse and dense graphs. In the third algorithm, we adopt the idea of Kruskal algorithm for the HCST problem to reach a better solution. This is the first time such algorithm is utilized in a problem with hop-constrained condition. Computational results on a number of problem instances are der…
In their seminal paper [Sleator and Tarjan, J.ACM, 1985], the authors conjectured that the splay tree is dynamically optimal binary search tree (BST). In spite of decades of intensive research, the problem remains open. Perhaps a more basic question, which has also attracted much attention, is if there exists any dynamically optimal BST algorithm. One such candidate is GREEDY which is a simple and intuitive BST algorithm [Lucas, Rutgers Tech. Report, 1988; Munro, ESA, 2000; Demaine, Harmon, Iacono, Kane and Patrascu, SODA, 2009]. [Demaine et al., SODA, 2009] showed a novel connection between a…
Fast Algorithms for Constructing Maximum Entropy Summary Trees
卡洛夫Shirley最近提出了摘要树作为一种新的方法来可视化大根树（Eurovis 2013），并给出了用于生成输入n节点根树的最大熵k节点摘要树的算法。然而，生成最优汇总树的算法只是伪多项式（并且仅适用于整数权重）;作者留下了多项式时间算法的开放存在性。此外，作者还提供了一个加性近似算法和贪婪启发式，都工作在真正的权重。本文展示了如何在O（k^2 n + n log n）的时间内构造实权重的最大熵k节点汇总树（实际上，与前面给出的贪婪启发式的时间界一样小）;如何加速近似算法，使其在O（n +（k^4/eps？）log（k/eps？）），以及如何加速贪心算法，使其时间复杂度为O（kn + nlogn）。总之，这些结果使摘要树成为比以前更实用的工具。
Greedy BST (or simply Greedy) is an online self-adjusting binary search tree defined in the geometric view ([Lucas, 1988; Munro, 2000; Demaine, Harmon, Iacono, Kane, Patrascu, SODA 2009). Along with Splay trees (Sleator, Tarjan 1985), Greedy is considered the most promising candidate for being dynamically optimal, i.e., starting with any initial tree, their access costs on any sequence is conjectured to be within $O(1)$ factor of the offline optimal. However, in the past four decades, the question has remained elusive even for highly restricted input. In this paper, we prove new bounds on the …
We present a technique that allows for improving on some relative greedy procedures by well-chosen (non-oblivious) local search algorithms. Relative greedy procedures are a particular type of greedy algorithm that start with a simple, though weak, solution, and iteratively replace parts of this starting solution by stronger components. Some well-known applications of relative greedy algorithms include approximation algorithms for Steiner Tree and, more recently, for connectivity augmentation problems. The main application of our technique leads to a $(1.5+ε)$-approximation for Weighted Tree Au…
We propose a general greedy algorithm for binary de Bruijn sequences, called Generalized Prefer-Opposite (GPO) Algorithm, and its modifications. By identifying specific feedback functions and initial states, we demonstrate that most previously-known greedy algorithms that generate binary de Bruijn sequences are particular cases of our new algorithm.
Decision Tree is a classic formulation of active learning: given $n$ hypotheses with nonnegative weights summing to 1 and a set of tests that each partition the hypotheses, output a decision tree using the provided tests that uniquely identifies each hypothesis and has minimum (weighted) average depth. Previous works showed that the greedy algorithm achieves a $O(\log n)$ approximation ratio for this problem and it is NP-hard beat a $O(\log n)$ approximation, settling the complexity of the problem. However, for Uniform Decision Tree, i.e. Decision Tree with uniform weights, the story is more s…
We provide a new bi-criteria $\tilde{O}(\log^2 k)$ competitive algorithm for explainable $k$-means clustering. Explainable $k$-means was recently introduced by Dasgupta, Frost, Moshkovitz, and Rashtchian (ICML 2020). It is described by an easy to interpret and understand (threshold) decision tree or diagram. The cost of the explainable $k$-means clustering equals to the sum of costs of its clusters; and the cost of each cluster equals the sum of squared distances from the points in the cluster to the center of that cluster. The best non bi-criteria algorithm for explainable clustering $\tilde{…
This paper introduces a novel scheduling problem, where jobs occupy a triangular shape on the time line. This problem is motivated by scheduling jobs with different criticality levels. A measure is introduced, namely the binary tree ratio. It is shown that the greedy algorithm solves the problem to optimality when the binary tree ratio of the input instance is at most 2. We also show that the problem is unary NP-hard for instances with binary tree ratio strictly larger than 2, and provide a quasi polynomial time approximation scheme (QPTAS). The approximation ratio of Greedy on general instanc…
In this paper, we provide new insights and analysis for the two elementary tree-based data structures - the AVL tree and binary heap. We presented two simple properties that gives a more direct way of relating the size of an AVL tree and the Fibonacci recurrence to establish the AVL tree's logarithmic height. We then give a potential function-based analysis of the bottom-up heap construction to get a simpler and tight bound for its worst-case running-time.
We suggest a new non-recursive algorithm for constructing a binary search tree given an array of numbers. The algorithm has $O(N)$ time and $O(1)$ memory complexity if the given array of $N$ numbers is sorted. The resulting tree is of minimal height and can be transformed to a complete binary search tree (retaining minimal height) with $O(\log N)$ time and $O(1)$ memory. The algorithm allows simple and effective parallelization.
We use a greedy strategy to list the spanning trees of the fan graph, $F_n$, such that successive trees differ by pivoting a single edge around a vertex. It is the first greedy algorithm for exhaustively generating spanning trees using such a minimal change operation. The resulting listing is then studied to find a recursive algorithm that produces the same listing in $O(1)$-amortized time using $O(n)$ space. Additionally, we present $O(n)$-time algorithms for ranking and unranking the spanning trees for our listing; an improvement over the generic $O(n^3)$-time algorithm for ranking and unran…
We study the problem of maximizing the number of spanning trees in a connected graph by adding at most $k$ edges from a given candidate edge set. We give both algorithmic and hardness results for this problem: - We give a greedy algorithm that, using submodularity, obtains an approximation ratio of $(1 - 1/e - ε)$ in the exponent of the number of spanning trees for any $ε> 0$ in time $\tilde{O}(m ε^{-1} + (n + q) ε^{-3})$, where $m$ and $q$ is the number of edges in the original graph and the candidate edge set, respectively. Our running time is optimal with respect to the input size up to log…
This paper describes the shortest path problem in weighted graphs and examines the differences in efficiency that occur when using Dijkstra's algorithm with a Fibonacci heap, binary heap, and self-balancing binary tree. Using C++ implementations of these algorithm variants, we find that the fastest method is not always the one that has the lowest asymptotic complexity. Reasons for this are discussed and backed with empirical evidence.
We consider the problem of listing all spanning trees of a graph $G$ such that successive trees differ by pivoting a single edge around a vertex. Such a listing is called a "pivot Gray code", and it has more stringent conditions than known "revolving-door" Gray codes for spanning trees. Most revolving-door algorithms employ a standard edge-deletion/edge-contraction recursive approach which we demonstrate presents natural challenges when requiring the "pivot" property. Our main result is the discovery of a greedy strategy to list the spanning trees of the fan graph in a pivot Gray code order. I…
random_tree() is a linear time and space C++ implementation able to create trees of up to a billion nodes for genetic programming and genetic improvement experiments. A 3.60GHz CPU can generate more than 18 million random nodes for GP program trees per second.
It is a known fact that, given two rooted binary phylogenetic trees, the concept of maximum acyclic agreement forests is sufficient to compute hybridization networks with minimum hybridization number. In this work, we demonstrate by first presenting an algorithm and then showing its correctness, that this concept is also sufficient in the case of multiple input trees. More precisely, we show that for computing minimum hybridization networks for multiple rooted binary phylogenetic trees on the same set of taxa it suffices to take only maximum acyclic agreement forests into account. Moreover, th…
Many tasks use data housed in relational databases to train boosted regression tree models. In this paper, we give a relational adaptation of the greedy algorithm for training boosted regression trees. For the subproblem of calculating the sum of squared residuals of the dataset, which dominates the runtime of the boosting algorithm, we provide a $(1 + ε)$-approximation using the tensor sketch technique. Employing this approximation within the relational boosted regression trees algorithm leads to learning similar model parameters, but with asymptotically better runtime.
Best match graphs (BMG) are a key intermediate in graph-based orthology detection and contain a large amount of information on the gene tree. We provide a near-cubic algorithm to determine whether a BMG is binary-explainable, i.e., whether it can be explained by a fully resolved gene tree and, if so, to construct such a tree. Moreover, we show that all such binary trees are refinements of the unique binary-resolvable tree (BRT), which in general is a substantial refinement of the also unique least resolved tree of a BMG. Finally, we show that the problem of editing an arbitrary vertex-colored …
