Flexible Alignment Super-Resolution Network for Multi-Contrast MRI
Xiao Ying AI Lab（小鹰人工智能实验室）；School of Electrical and Information Engineering, Tianjin University（天津大学电气自动化与信息工程学院）；Peking Union Medical College Hospital（北京协和医院）；School of Electronics Engineering and Computer Science, Peking University（北京大学电子工程与计算机科学学院）
Yiming Liu, Mengxi Zhang, Weiqin Zhang, Bo Jiang, Bo Hou, Dan Liu, Jie Chen, Heqing Lian
Magnetic resonance imaging plays an essential role in clinical diagnosis by acquiring the structural information of biological tissue. Recently, many multi-contrast MRI super-resolution networks achieve good effects. However, most studies ignore the impact of the inappropriate foreground scale and patch size of multi-contrast MRI, which probably leads to inappropriate feature alignment. To tackle this problem, we propose the Flexible Alignment Super-Resolution Network (FASR-Net) for multi-contrast MRI Super-Resolution. The Flexible Alignment module of FASR-Net consists of two modules for feature alignment. (1) The Single-Multi Pyramid Alignment(S-A) module solves the situation where low-resolution (LR) images and reference (Ref) images have different scales. (2) The Multi-Multi Pyramid Alignment(M-A) module solves the situation where LR and Ref images have the same scale. Besides, we propose the Cross-Hierarchical Progressive Fusion (CHPF) module aiming at fusing the features effectively, further improving the image quality. Compared with other state-of-the-art methods, FASR-net achieves the most competitive results on FastMRI and IXI datasets. Our code will be available at \href{https://github.com/yimingliu123/FASR-Net}{https://github.com/yimingliu123/FASR-Net}.
Shanghai Starriver Bilingual School（上海星河湾双语学校）；University of California, Los Angeles（加利福尼亚大学洛杉矶分校）
Magnetic Resonance Imaging (MRI) is important in clinic to produce high resolution images for diagnosis, but its acquisition time is long for high resolution images. Deep learning based MRI super resolution methods can reduce scan time without complicated sequence programming, but may create additional artifacts due to the discrepancy between training data and testing data. Data consistency layer can improve the deep learning results but needs raw k-space data. In this work, we propose a magnitude-image based data consistency deep learning MRI super resolution method to improve super resolutio…
Four-dimensional magnetic resonance imaging (4D-MRI) is an emerging technique for tumor motion management in image-guided radiation therapy (IGRT). However, current 4D-MRI suffers from low spatial resolution and strong motion artifacts owing to the long acquisition time and patients' respiratory variations; these limitations, if not managed properly, can adversely affect treatment planning and delivery in IGRT. Herein, we developed a novel deep learning framework called the coarse-super-resolution-fine network (CoSF-Net) to achieve simultaneous motion estimation and super-resolution in a unifi…
Harbin Institute of Technology（哈尔滨工业大学）；Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences（中国科学院深圳先进技术研究院）；Nanyang Technological University（南洋理工大学）；Shenzhen University（深圳大学）；Inception Institute of Artificial Intelligence（因赛普申人工智能研究院）
Magnetic Resonance Imaging(MRI) has been widely used in clinical application and pathology research by helping doctors make more accurate diagnoses. On the other hand, accurate diagnosis by MRI remains a great challenge as images obtained via present MRI techniques usually have low resolutions. Improving MRI image quality and resolution thus becomes a critically important task. This paper presents an innovative Coupled-Projection Residual Network (CPRN) for MRI super-resolution. The CPRN consists of two complementary sub-networks: a shallow network and a deep network that keep the content cons…
Harbin Institute of Technology（哈尔滨工业大学）；Inception Institute of Artificial Intelligence（起源人工智能研究院）；Nanjing Medical University（南京医科大学）
The core problem of Magnetic Resonance Imaging (MRI) is the trade off between acceleration and image quality. Image reconstruction and super-resolution are two crucial techniques in Magnetic Resonance Imaging (MRI). Current methods are designed to perform these tasks separately, ignoring the correlations between them. In this work, we propose an end-to-end task transformer network (T$^2$Net) for joint MRI reconstruction and super-resolution, which allows representations and feature transmission to be shared between multiple task to achieve higher-quality, super-resolved and motion-artifacts-fr…
Otto von Guericke University Magdeburg（马格德堡奥托·冯·格里克大学）
Dynamic imaging is a beneficial tool for interventions to assess physiological changes. Nonetheless during dynamic MRI, while achieving a high temporal resolution, the spatial resolution is compromised. To overcome this spatio-temporal trade-off, this research presents a super-resolution (SR) MRI reconstruction with prior knowledge based fine-tuning to maximise spatial information while reducing the required scan-time for dynamic MRIs. An U-Net based network with perceptual loss is trained on a benchmark dataset and fine-tuned using one subject-specific static high resolution MRI as prior know…
MIT（麻省理工学院）；Boston Children’s Hospital（波士顿儿童医院）；Harvard Medical School（哈佛医学院）
Fetal motion is unpredictable and rapid on the scale of conventional MR scan times. Therefore, dynamic fetal MRI, which aims at capturing fetal motion and dynamics of fetal function, is limited to fast imaging techniques with compromises in image quality and resolution. Super-resolution for dynamic fetal MRI is still a challenge, especially when multi-oriented stacks of image slices for oversampling are not available and high temporal resolution for recording the dynamics of the fetus or placenta is desired. Further, fetal motion makes it difficult to acquire high-resolution images for supervi…
Athinoula A. Martinos Center for Biomedical Imaging（阿西努拉·A·马蒂诺斯生物医学成像中心）；Massachusetts General Hospital（马萨诸塞州总医院）；Harvard Medical School（哈佛医学院）；Boston University（波士顿大学）；Harvard University（哈佛大学）
Low-field (LF) MRI scanners have the power to revolutionize medical imaging by providing a portable and cheaper alternative to high-field MRI scanners. However, such scanners are usually significantly noisier and lower quality than their high-field counterparts. The aim of this paper is to improve the SNR and overall image quality of low-field MRI scans to improve diagnostic capability. To address this issue, we propose a Nested U-Net neural network architecture super-resolution algorithm that outperforms previously suggested deep learning methods with an average PSNR of 78.83 and SSIM of 0.95…
Single-Subject Multi-View MRI Super-Resolution via Implicit Neural Representations
Department of Radiology, Weill Cornell Medicine, New York, USA（韦尔·科恩医学系放射科，纽约，美国）；School of Electrical and Computer Engineering, Cornell University（康奈尔大学电气与计算机工程学院）；Cornell Tech, New York, USA（康奈尔科技，纽约，美国）；Weill Cornell Graduate School of Medical Sciences, New York, USA（韦尔·科恩医学科学研究生院，纽约，美国）
Otto von Guericke University Magdeburg（马格德堡奥托·冯·格里克大学）；University Hospital Magdeburg（马格德堡大学医院）；German Centre for Neurodegenerative Diseases（德国神经退行性疾病中心）；Center for Behavioral Brain Sciences（行为脑科学中心）；Leibniz Institute for Neurobiology（莱布尼茨神经生物学研究所）；MedDigit
Diffusion-weighted magnetic resonance imaging (DW-MRI) can be used to characterise the microstructure of the nervous tissue, e.g. to delineate brain white matter connections in a non-invasive manner via fibre tracking. Magnetic Resonance Imaging (MRI) in high spatial resolution would play an important role in visualising such fibre tracts in a superior manner. However, obtaining an image of such resolution comes at the expense of longer scan time. Longer scan time can be associated with the increase of motion artefacts, due to the patient's psychological and physical conditions. Single Image S…
Distillation-Driven Diffusion Model for Multi-Scale MRI Super-Resolution: Make 1.5T MRI Great Again
Massachusetts General Hospital（麻省总医院）；Harvard Medical School（哈佛医学院）；University Sorbonne Paris Nord（巴黎北索邦大学）；Jiangsu Institute of Hematology（江苏血液学研究所）；The First Affiliated Hospital of Soochow University（苏州大学附属第一医院）；Henan University of Chinese Medicine（河南中医药大学）；German Cancer Research Center（德国癌症研究中心）；Athinoula A. Martinos Centre for Biomedical Imaging（阿西努拉·A.马蒂诺斯生物医学成像中心）；Geneva University Hospital（日内瓦大学医院）；IDP Institute（IDP研究所）；University of Orleans（奥尔良大学）
UCLA（加州大学洛杉矶分校）；Cedars-Sinai Medical Center（西达赛奈医疗中心）
Magnetic resonance image (MRI) in high spatial resolution provides detailed anatomical information and is often necessary for accurate quantitative analysis. However, high spatial resolution typically comes at the expense of longer scan time, less spatial coverage, and lower signal to noise ratio (SNR). Single Image Super-Resolution (SISR), a technique aimed to restore high-resolution (HR) details from one single low-resolution (LR) input image, has been improved dramatically by recent breakthroughs in deep learning. In this paper, we introduce a new neural network architecture, 3D Densely Con…
Dual Arbitrary Scale Super-Resolution for Multi-Contrast MRI
Shenzhen International Graduate School, Tsinghua University（清华大学深圳国际研究生院）；The Hong Kong Polytechnic University（香港理工大学）；The University of Texas at Dallas（德克萨斯大学达拉斯分校）
Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School（麻省总医院和哈佛医学院阿蒂努拉·A·马蒂诺斯生物医学成像中心）；Department of Radiology, Massachusetts General Hospital and Harvard Medical School（麻省总医院和哈佛医学院放射科）；Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London（伦敦大学学院医学物理与生物医学工程系医学图像计算中心）；Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology（麻省理工学院计算机科学与人工智能实验室）；Department of Neurology and Center for Genomic Medicine, Massachusetts General Hospital and Harvard Medical School（麻省总医院和哈佛医学院神经内科与基因组医学中心）；Swiss Federal Institute of Technology (ETH)（苏黎世联邦理工学院）；Department of Emergency Medicine, Massachusetts General Hospital and Harvard Medical School（麻省总医院和哈佛医学院急诊医学科）；Department of Neurology, Yale New Haven Hospital（耶鲁纽黑文医院神经内科）；Department of Physics, Harvard University（哈佛大学物理系）
The recent introduction of portable, low-field MRI (LF-MRI) into the clinical setting has the potential to transform neuroimaging. However, LF-MRI is limited by lower resolution and signal-to-noise ratio, leading to incomplete characterization of brain regions. To address this challenge, recent advances in machine learning facilitate the synthesis of higher resolution images derived from one or multiple lower resolution scans. Here, we report the extension of a machine learning super-resolution (SR) algorithm to synthesize 1 mm isotropic MPRAGE-like scans from LF-MRI T1-weighted and T2-weighte…
University of California, Los Angeles（加利福尼亚大学洛杉矶分校）；Cedars-Sinai Medical Center（西达赛奈医疗中心）
High-resolution (HR) magnetic resonance imaging (MRI) provides detailed anatomical information that is critical for diagnosis in the clinical application. However, HR MRI typically comes at the cost of long scan time, small spatial coverage, and low signal-to-noise ratio (SNR). Recent studies showed that with a deep convolutional neural network (CNN), HR generic images could be recovered from low-resolution (LR) inputs via single image super-resolution (SISR) approaches. Additionally, previous works have shown that a deep 3D CNN can generate high-quality SR MRIs by using learned image priors. …
InverseSR: 3D Brain MRI Super-Resolution Using a Latent Diffusion Model
St. Francis Xavier University（圣弗朗西斯泽维尔大学）；Martinos Center for Biomedical Imaging（马蒂诺生物医学成像中心）；Massachusetts General Hospital（麻省总医院）；Nova Scotia Health Authority（新斯科舍省卫生局）；King’s College London（伦敦国王学院）；University of California, Santa Cruz（加州大学圣克鲁兹分校）
Layer Selection in Feature-Based Losses Affects Image Quality and Microstructural Consistency in Deep Learning Super-Resolution of Brain Diffusion MRI
Institue for Applied Medical Informatics, University Medical Center Hamburg-Eppendorf（应用医学信息学研究所，汉堡大学医学中心）；Institute of Computational Neuroscience, University Medical Center Hamburg-Eppendorf（计算神经科学研究所，汉堡大学医学中心）；Center for Biomedical Artificial Intelligence (bAIome), University Medical Center Hamburg-Eppendorf（生物医学人工智能中心（bAIome），汉堡大学医学中心）
MIT（麻省理工学院）；Boston Children’s Hospital（波士顿儿童医院）；Harvard Medical School（哈佛医学院）
Fetal brain MRI is useful for diagnosing brain abnormalities but is challenged by fetal motion. The current protocol for T2-weighted fetal brain MRI is not robust to motion so image volumes are degraded by inter- and intra- slice motion artifacts. Besides, manual annotation for fetal MR image quality assessment are usually time-consuming. Therefore, in this work, a semi-supervised deep learning method that detects slices with artifacts during the brain volume scan is proposed. Our method is based on the mean teacher model, where we not only enforce consistency between student and teacher model…
Harbin Institute of Technology（哈尔滨工业大学）；Inception Institute of Artificial Intelligence（起源人工智能研究院）
Super-resolution (SR) plays a crucial role in improving the image quality of magnetic resonance imaging (MRI). MRI produces multi-contrast images and can provide a clear display of soft tissues. However, current super-resolution methods only employ a single contrast, or use a simple multi-contrast fusion mechanism, ignoring the rich relations among different contrasts, which are valuable for improving SR. In this work, we propose a multi-stage integration network (i.e., MINet) for multi-contrast MRI SR, which explicitly models the dependencies between multi-contrast images at different stages …
University of Science and Technology of China（中国科学技术大学）；Institute of Advanced Technology（先进技术研究院）；Institute of Artificial Intelligence, Hefei Comprehensive National Science Center（合肥综合性国家科学中心人工智能研究院）
Magnetic resonance imaging (MRI) with high resolution (HR) provides more detailed information for accurate diagnosis and quantitative image analysis. Despite the significant advances, most existing super-resolution (SR) reconstruction network for medical images has two flaws: 1) All of them are designed in a black-box principle, thus lacking sufficient interpretability and further limiting their practical applications. Interpretable neural network models are of significant interest since they enhance the trustworthiness required in clinical practice when dealing with medical images. 2) most ex…
University of Manchester（曼彻斯特大学）；University of Sheffield（谢菲尔德大学）
High resolution diffusion MRI (dMRI) data is often constrained by limited scanning time in clinical settings, thus restricting the use of downstream analysis techniques that would otherwise be available. In this work we develop a 3D recurrent convolutional neural network (RCNN) capable of super-resolving dMRI volumes in the angular (q-space) domain. Our approach formulates the task of angular super-resolution as a patch-wise regression using a 3D autoencoder conditioned on target b-vectors. Within the network we use a convolutional long short term memory (ConvLSTM) cell to model the relationsh…
Magnetic resonance imaging (MRI) enables 3-D imaging of anatomical structures. However, the acquisition of MR volumes with high spatial resolution leads to long scan times. To this end, we propose volumetric super-resolution forests (VSRF) to enhance MRI resolution retrospectively. Our method learns a locally linear mapping between low-resolution and high-resolution volumetric image patches by employing random forest regression. We customize features suitable for volumetric MRI to train the random forest and propose a median tree ensemble for robust regression. VSRF outperforms state-of-the-ar…
The k-space data generated from magnetic resonance imaging (MRI) is only a finite sampling of underlying signals. Therefore, MRI images often suffer from low spatial resolution and Gibbs ringing artifacts. Previous studies tackled these two problems separately, where super resolution methods tend to enhance Gibbs artifacts, whereas Gibbs ringing removal methods tend to blur the images. It is also a challenge that high resolution ground truth is hard to obtain in clinical MRI. In this paper, we propose an unsupervised learning framework for both MRI super resolution and Gibbs artifacts removal …
Politecnico di Milano（米兰理工大学）；University of Twente（特温特大学）；University of Bath（巴斯大学）；University of Cambridge（剑桥大学）
4D flow MRI is a non-invasive imaging method that can measure blood flow velocities over time. However, the velocity fields detected by this technique have limitations due to low resolution and measurement noise. Coordinate-based neural networks have been researched to improve accuracy, with SIRENs being suitable for super-resolution tasks. Our study investigates SIRENs for time-varying 3-directional velocity fields measured in the aorta by 4D flow MRI, achieving denoising and super-resolution. We trained our method on voxel coordinates and benchmarked our approach using synthetic measurements…
Indian Institute of Technology Bombay（印度理工学院孟买分校）；Whirlpool（惠而浦公司）
Capturing high-resolution magnetic resonance (MR) images is a time consuming process, which makes it unsuitable for medical emergencies and pediatric patients. Low-resolution MR imaging, by contrast, is faster than its high-resolution counterpart, but it compromises on fine details necessary for a more precise diagnosis. Super-resolution (SR), when applied to low-resolution MR images, can help increase their utility by synthetically generating high-resolution images with little additional time. In this paper, we present a SR technique for MR images that is based on generative adversarial netwo…
The Wellcome Centre for Human Neuroimaging, UCL（伦敦大学学院惠康人类神经影像中心）；UCL Institute of Neurology（伦敦大学学院神经学研究所）
This paper presents a generative model for super-resolution in routine clinical magnetic resonance images (MRI), of arbitrary orientation and contrast. The model recasts the recovery of high resolution images as an inverse problem, in which a forward model simulates the slice-select profile of the MR scanner. The paper introduces a prior based on multi-channel total variation for MRI super-resolution. Bias-variance trade-off is handled by estimating hyper-parameters from the low resolution input scans. The model was validated on a large database of brain images. The validation showed that the …
Korea Advanced Institute of Science and Technology (KAIST)（韩国科学技术院）；Seoul National University College of Medicine（首尔大学医学院）
Diffusion-weighted MRI is nowadays performed routinely due to its prognostic ability, yet the quality of the scans are often unsatisfactory which can subsequently hamper the clinical utility. To overcome the limitations, here we propose a fully unsupervised quality enhancement scheme, which boosts the resolution and removes the motion artifact simultaneously. This process is done by first training the network using optimal transport driven cycleGAN with stochastic degradation block which learns to remove aliasing artifacts and enhance the resolution, then using the trained network in the test …
Analyzing plant roots is crucial to understand plant performance in different soil environments. While magnetic resonance imaging (MRI) can be used to obtain 3D images of plant roots, extracting the root structural model is challenging due to highly noisy soil environments and low-resolution of MRI images. To improve both contrast and resolution, we adapt the state-of-the-art method RefineNet for 3D segmentation of the plant root MRI images in super-resolution. The networks are trained from few manual segmentations that are augmented by geometric transformations, realistic noise, and other var…
University of Auckland（奥克兰大学）；University of Leeds（利兹大学）；Auckland Bioengineering Institute（奥克兰生物工程研究所）；Institute of Environmental Science and Research（环境科学与研究所）；King's College London（伦敦国王学院）
4D-flow magnetic resonance imaging (MRI) is an emerging imaging technique where spatiotemporal 3D blood velocity can be captured with full volumetric coverage in a single non-invasive examination. This enables qualitative and quantitative analysis of hemodynamic flow parameters of the heart and great vessels. An increase in the image resolution would provide more accuracy and allow better assessment of the blood flow, especially for patients with abnormal flows. However, this must be balanced with increasing imaging time. The recent success of deep learning in generating super resolution image…
MRI Super-Resolution with Deep Learning: A Comprehensive Survey
A. I. Virtanen Institute for Molecular Sciences, Faculty of Health Sciences, University of Eastern Finland（A.I.维塔内恩分子科学研究所，健康科学学院，东芬兰大学）；Harvard Medical School and Boston Children’s Hospital（哈佛医学院和波士顿儿童医院）；Department of Radiology, Technical University of Munich（医学影像学系，慕尼黑技术大学）；Department of Radiology, Massachusetts General Hospital（医学影像学系，麻省总医院）
University of Bonn（波恩大学）；FZ Jülich GmbH（于利希研究中心有限公司）
Magnetic resonance imaging (MRI) enables plant scientists to non-invasively study root system development and root-soil interaction. Challenging recording conditions, such as low resolution and a high level of noise hamper the performance of traditional root extraction algorithms, though. We propose to increase signal-to-noise ratio and resolution by segmenting the scanned volumes into root and soil in super-resolution using a 3D U-Net. Tests on real data show that the trained network is capable to detect most roots successfully and even finds roots that were missed by human annotators. Our ex…
We propose a two-stage algorithm for the super-resolution of MR images from their low-frequency k-space samples. In the first stage we estimate a resolution-independent mask whose zeros represent the edges of the image. This builds off recent work extending the theory of sampling signals of finite rate of innovation (FRI) to two-dimensional curves. We enable its application to MRI by proposing extensions of the signal models allowed by FRI theory, and by developing a more robust and efficient means to determine the edge mask. In the second stage of the scheme, we recover the super-resolved MR …
We propose using a coordinate network decoder for the task of super-resolution in MRI. The continuous signal representation of coordinate networks enables this approach to be scale-agnostic, i.e. one can train over a continuous range of scales and subsequently query at arbitrary resolutions. Due to the difficulty of performing super-resolution on inherently noisy data, we analyze network behavior under multiple denoising strategies. Lastly we compare this method to a standard convolutional decoder using both quantitative metrics and a radiologist study implemented in Voxel, our newly developed…
School of Biomedical Engineering, ShanghaiTech University（上海科技大学生物医学工程学院）；Shanghai Academy of AI for Science（上海人工智能研究院）；Fudan University（复旦大学）；School of Computing and Communications, Lancaster University（兰卡斯特大学计算与通信学院）；School of Biomedical Engineering & State Key Laboratory of Advanced Medical Materials and Devices, ShanghaiTech University（上海科技大学生物医学工程学院与先进医学材料与器械国家重点实验室）；Shanghai Clinical Research and Trial Center（上海临床研究与试验中心）
Unrolled Reconstruction with Integrated Super-Resolution for Accelerated 3D LGE MRI
Kahlert School of Computing, University of Utah, Salt Lake City, UT, USA Radiology \& Imaging Sciences, University of Utah, Salt Lake City, UT, USA Cardiology, University of Utah, Salt Lake City, UT, USA
The onset of rheumatic diseases such as rheumatoid arthritis is typically subclinical, which results in challenging early detection of the disease. However, characteristic changes in the anatomy can be detected using imaging techniques such as MRI or CT. Modern imaging techniques such as chemical exchange saturation transfer (CEST) MRI drive the hope to improve early detection even further through the imaging of metabolites in the body. To image small structures in the joints of patients, typically one of the first regions where changes due to the disease occur, a high resolution for the CEST …
The University of Sheffield（谢菲尔德大学）；University of East Anglia（东英吉利大学）
Cross-modal image synthesis is a topical problem in medical image computing. Existing methods for image synthesis are either tailored to a specific application, require large scale training sets, or are based on partitioning images into overlapping patches. In this paper, we propose a novel Dual cOnvolutional filTer lEarning (DOTE) approach to overcome the drawbacks of these approaches. We construct a closed loop joint filter learning strategy that generates informative feedback for model self-optimization. Our method can leverage data more efficiently thus reducing the size of the required tr…
Recently, the Magnetic Resonance Imaging (MRI) images have limited and unsatisfactory resolutions due to various constraints such as physical, technological and economic considerations. Super-resolution techniques can obtain high-resolution MRI images. The traditional methods obtained the resolution enhancement of brain MRI by interpolations, affecting the accuracy of the following diagnose process. The requirement for brain image quality is fast increasing. In this paper, we propose an image super-resolution (SR) method based on overcomplete dictionaries and inherent similarity of an image to…
Dynamic Contrast-enhanced magnetic resonance imaging (DCE-MRI) is a tissue perfusion imaging technique. Some versatile free-breathing DCE-MRI techniques combining compressed sensing (CS) and parallel imaging with golden-angle radial sampling have been developed to improve motion robustness with high spatial and temporal resolution. These methods have demonstrated good diagnostic performance in clinical setting, but the reconstruction quality will degrade at high acceleration rates and overall reconstruction time remains long. In this paper, we proposed a new parallel CS reconstruction model fo…
Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences（中国科学院深圳先进技术研究院）；Inner Mongolia University（内蒙古大学）
Recently, score-based diffusion models have shown satisfactory performance in MRI reconstruction. Most of these methods require a large amount of fully sampled MRI data as a training set, which, sometimes, is difficult to acquire in practice. This paper proposes a fully-sampled-data-free score-based diffusion model for MRI reconstruction, which learns the fully sampled MR image prior in a self-supervised manner on undersampled data. Specifically, we first infer the fully sampled MR image distribution from the undersampled data by Bayesian deep learning, then perturb the data distribution and a…
Exploring Siamese Networks in Self-Supervised Fast MRI Reconstruction
Stanford University School of Medicine（斯坦福大学医学院）；Xiamen University（厦门大学）；School of Electronic Science and Engineering, Xiamen University（厦门大学电子科学与工程学院）；School of Informatics, Xiamen University（厦门大学信息学院）；Institute of Artificial Intelligence, Xiamen University（厦门大学人工智能研究院）
University of Sussex（萨塞克斯大学）；Brighton and Sussex Medical School（布莱顿和萨塞克斯医学院）；St. Vincent’s University Hospital（圣文森特大学医院）；University of Nottingham（诺丁汉大学）；Cardiff University（卡迪夫大学）
Streamlined qBOLD acquisitions enable experimentally straightforward observations of brain oxygen metabolism. $R_2^\prime$ maps are easily inferred; however, the Oxygen extraction fraction (OEF) and deoxygenated blood volume (DBV) are more ambiguously determined from the data. As such, existing inference methods tend to yield very noisy and underestimated OEF maps, while overestimating DBV. This work describes a novel probabilistic machine learning approach that can infer plausible distributions of OEF and DBV. Initially, we create a model that produces informative voxelwise prior distribution…
Bilkent University（比尔肯特大学）；University of Southern California（南加利福尼亚大学）；Hacettepe University（哈杰泰佩大学）
Learning-based synthetic multi-contrast MRI commonly involves deep models trained using high-quality images of source and target contrasts, regardless of whether source and target domain samples are paired or unpaired. This results in undesirable reliance on fully-sampled acquisitions of all MRI contrasts, which might prove impractical due to limitations on scan costs and time. Here, we propose a novel semi-supervised deep generative model that instead learns to recover high-quality target images directly from accelerated acquisitions of source and target contrasts. To achieve this, the propos…
Wellcome Centre for Human Neuroimaging, University College London（伦敦大学学院惠康人类神经影像中心）；Institute of Neurology, University College London（伦敦大学学院神经学研究所）
We present a tool for resolution recovery in multimodal clinical magnetic resonance imaging (MRI). Such images exhibit great variability, both biological and instrumental. This variability makes automated processing with neuroimaging analysis software very challenging. This leaves intelligence extractable only from large-scale analyses of clinical data untapped, and impedes the introduction of automated predictive systems in clinical care. The tool presented in this paper enables such processing, via inference in a generative model of thick-sliced, multi-contrast MR scans. All model parameters…
