Multi-contrast magnetic resonance imaging (MRI) is the most common management tool used to characterize neurological disorders based on brain tissue contrasts. However, acquiring high-resolution MRI scans is time-consuming and infeasible under specific conditions. Hence, multi-contrast super-resolution methods have been developed to improve the quality of low-resolution contrasts by leveraging complementary information from multi-contrast MRI. Current deep learning-based super-resolution methods have limitations in estimating restoration uncertainty and avoiding mode collapse. Although the diffusion model has emerged as a promising approach for image enhancement, capturing complex interactions between multiple conditions introduced by multi-contrast MRI super-resolution remains a challenge for clinical applications. In this paper, we propose a disentangled conditional diffusion model, DisC-Diff, for multi-contrast brain MRI super-resolution. It utilizes the sampling-based generation and simple objective function of diffusion models to estimate uncertainty in restorations effectively and ensure a stable optimization process. Moreover, DisC-Diff leverages a disentangled multi-stream network to fully exploit complementary information from multi-contrast MRI, improving model interpretation under multiple conditions of multi-contrast inputs. We validated the effectiveness of DisC-Diff on two datasets: the IXI dataset, which contains 578 normal brains, and a clinical dataset with 316 pathological brains. Our experimental results demonstrate that DisC-Diff outperforms other state-of-the-art methods both quantitatively and visually.
CAS Key Laboratory of Technology in Geo-spatial Information Processing and Application System, University of Science and Technology of China（中国科学技术大学 中国科学院空间信息处理与应用系统技术重点实验室）
Hybrid-distorted image restoration (HD-IR) is dedicated to restore real distorted image that is degraded by multiple distortions. Existing HD-IR approaches usually ignore the inherent interference among hybrid distortions which compromises the restoration performance. To decompose such interference, we introduce the concept of Disentangled Feature Learning to achieve the feature-level divide-and-conquer of hybrid distortions. Specifically, we propose the feature disentanglement module (FDM) to distribute feature representations of different distortions into different channels by revising gain-…
Sorbonne Université（索邦大学）；Institut du Cerveau - Paris Brain Institute - ICM（巴黎大脑研究所（ICM））；CNRS（法国国家科学研究中心）；Inria（法国国家信息与自动化研究所）；Inserm（法国国家健康与医学研究院）；AP-HP（巴黎公共援助医院集团）；Hôpital de la Pitié Salpêtrière（皮蒂耶-萨尔佩特里埃医院）
Early and accurate diagnosis of parkinsonian syndromes is critical to provide appropriate care to patients and for inclusion in therapeutic trials. The red nucleus is a structure of the midbrain that plays an important role in these disorders. It can be visualized using iron-sensitive magnetic resonance imaging (MRI) sequences. Different iron-sensitive contrasts can be produced with MRI. Combining such multimodal data has the potential to improve segmentation of the red nucleus. Current multimodal segmentation algorithms are computationally consuming, cannot deal with missing modalities and ne…
Manipal Institute of Technology（马尼帕尔理工学院）；University of Groningen（格罗宁根大学）
Trusting the predictions of deep learning models in safety critical settings such as the medical domain is still not a viable option. Distentangled uncertainty quantification in the field of medical imaging has received little attention. In this paper, we study disentangled uncertainties in image to image translation tasks in the medical domain. We compare multiple uncertainty quantification methods, namely Ensembles, Flipout, Dropout, and DropConnect, while using CycleGAN to convert T1-weighted brain MRI scans to T2-weighted brain MRI scans. We further evaluate uncertainty behavior in the pre…
DiffCMR: Fast Cardiac MRI Reconstruction with Diffusion Probabilistic Models
The Hong Kong University of Science and Technology（香港科技大学）；Southern University of Science and Technology（南方科技大学）；HKUST Shenzhen Research Institute（香港科技大学深圳研究院）
Fudan University（复旦大学）；Shanghai Jiao Tong University（上海交通大学）；King’s College London（伦敦国王学院）
Left atrial (LA) segmentation from late gadolinium enhanced magnetic resonance imaging (LGE MRI) is a crucial step needed for planning the treatment of atrial fibrillation. However, automatic LA segmentation from LGE MRI is still challenging, due to the poor image quality, high variability in LA shapes, and unclear LA boundary. Though deep learning-based methods can provide promising LA segmentation results, they often generalize poorly to unseen domains, such as data from different scanners and/or sites. In this work, we collect 210 LGE MRIs from different centers with different levels of ima…
Segmenting the fine structure of the mouse brain on magnetic resonance (MR) images is critical for delineating morphological regions, analyzing brain function, and understanding their relationships. Compared to a single MRI modality, multimodal MRI data provide complementary tissue features that can be exploited by deep learning models, resulting in better segmentation results. However, multimodal mouse brain MRI data is often lacking, making automatic segmentation of mouse brain fine structure a very challenging task. To address this issue, it is necessary to fuse multimodal MRI data to produ…
Principled Feature Disentanglement for High-Fidelity Unified Brain MRI Synthesis
School of Computing, Korea Advanced Institute of Science（韩国科学技术院计算机学院）；Samsung Research, Seoul 06765, Republic of Korea（三星研究院）；Gordon Center for Medical Imaging, Massachusetts General Hospital（麻省总医院影像中心）；Harvard Medical School, Boston, MA 02114, USA（哈佛医学院）
Helmholtz AI（亥姆霍兹AI）；Helmholtz Center Munich（慕尼黑亥姆霍兹中心）；Klinikum Rechts der Isar（右岸医院）；Technical University of Munich (TUM)（慕尼黑工业大学）
In recent years, data-driven machine learning (ML) methods have revolutionized the computer vision community by providing novel efficient solutions to many unsolved (medical) image analysis problems. However, due to the increasing privacy concerns and data fragmentation on many different sites, existing medical data are not fully utilized, thus limiting the potential of ML. Federated learning (FL) enables multiple parties to collaboratively train a ML model without exchanging local data. However, data heterogeneity (non-IID) among the distributed clients is yet a challenge. To this end, we pro…
Magnetic resonance imaging (MRI) is a common and life-saving medical imaging technique. However, acquiring high signal-to-noise ratio MRI scans requires long scan times, resulting in increased costs and patient discomfort, and decreased throughput. Thus, there is great interest in denoising MRI scans, especially for the subtype of diffusion MRI scans that are severely SNR-limited. While most prior MRI denoising methods are supervised in nature, acquiring supervised training datasets for the multitude of anatomies, MRI scanners, and scan parameters proves impractical. Here, we propose Denoising…
University of Dundee（邓迪大学）；University of Cambridge（剑桥大学）；University of Bath（巴斯大学）；East China Normal University（华东师范大学）
MRI synthesis promises to mitigate the challenge of missing MRI modality in clinical practice. Diffusion model has emerged as an effective technique for image synthesis by modelling complex and variable data distributions. However, most diffusion-based MRI synthesis models are using a single modality. As they operate in the original image domain, they are memory-intensive and less feasible for multi-modal synthesis. Moreover, they often fail to preserve the anatomical structure in MRI. Further, balancing the multiple conditions from multi-modal MRI inputs is crucial for multi-modal synthesis. …
Pseudo-MRI-Guided PET Image Reconstruction Method Based on a Diffusion Probabilistic Model
Washington University in St. Louis（圣路易斯华盛顿大学）；Yale University（耶鲁大学）；Western University（西安大略大学）；Lawson Health Research Institute（劳森健康研究所）；McGill University（麦吉尔大学）；Siemens Healthineers AG（西门子医疗保健公司）；Mallinckrodt Institute of Radiology（马林克罗特放射学研究所）
Fast Controllable Diffusion Models for Undersampled MRI Reconstruction
School of Electrical Engineering and Computer Science, University of Queensland（昆士兰大学电气工程与计算机科学学院）；School of Mathematics and Physics, University of Queensland（昆士兰大学数学与物理学院）
