Registering CT images of the chest is a crucial step for several tasks such as disease progression tracking or surgical planning. It is also a challenging step because of the heterogeneous content of the human abdomen which implies complex deformations. In this work, we focus on accurately registering a subset of organs of interest. We register organ surface point clouds, as may typically be extracted from an automatic segmentation pipeline, by expanding the Bayesian Coherent Point Drift algorithm (BCPD). We introduce MO-BCPD, a multi-organ version of the BCPD algorithm which explicitly models three important aspects of this task: organ individual elastic properties, inter-organ motion coherence and segmentation inaccuracy. This model also provides an interpolation framework to estimate the deformation of the entire volume. We demonstrate the efficiency of our method by registering different patients from the LITS challenge dataset. The target registration error on anatomical landmarks is almost twice as small for MO-BCPD compared to standard BCPD while imposing the same constraints on individual organs deformation.
LMU München（慕尼黑大学）；University of Tübingen（图宾根大学）；Helmholtz Zentrum München（慕尼黑亥姆霍兹中心）；University Hospital Heidelberg（海德堡大学医院）
Morphological analysis of organs based on images is a key task in medical imaging computing. Several approaches have been proposed for the quantitative assessment of morphological changes, and they have been widely used for the analysis of the effects of aging, disease and other factors in organ morphology. In this work, we propose a deep neural network for predicting diabetes on abdominal shapes. The network directly operates on raw point clouds without requiring mesh processing or shape alignment. Instead of relying on hand-crafted shape descriptors, an optimal representation is learned in t…
Human body is a complex dynamic system composed of various sub-dynamic parts. Especially, thoracic and abdominal organs have complex internal shape variations with different frequencies by various reasons such as respiration with fast motion and peristalsis with slower motion. CT protocols for abdominal lesions are multi-phase scans for various tumor detection to use different vascular contrast, however, they are not aligned well enough to visually check the same area. In this paper, we propose a time-efficient and accurate deformable registration algorithm for multi-phase CT scans considering…
Deformable registration of two-dimensional/three-dimensional (2D/3D) images of abdominal organs is a complicated task because the abdominal organs deform significantly and their contours are not detected in two-dimensional X-ray images. We propose a supervised deep learning framework that achieves 2D/3D deformable image registration between 3D volumes and single-viewpoint 2D projected images. The proposed method learns the translation from the target 2D projection images and the initial 3D volume to 3D displacement fields. In experiments, we registered 3D-computed tomography (CT) volumes to di…
SINTEF（挪威科学与工业研究基金会）；Norwegian University of Science and Technology (NTNU)（挪威科技大学）；St. Olavs hospital, Trondheim University Hospital（圣奥拉夫医院，特隆赫姆大学医院）；Oslo University Hospital（奥斯陆大学医院）
Purpose: This study aims to explore training strategies to improve convolutional neural network-based image-to-image deformable registration for abdominal imaging. Methods: Different training strategies, loss functions, and transfer learning schemes were considered. Furthermore, an augmentation layer which generates artificial training image pairs on-the-fly was proposed, in addition to a loss layer that enables dynamic loss weighting. Results: Guiding registration using segmentations in the training step proved beneficial for deep-learning-based image registration. Finetuning the pretrained m…
The Dresden Dataset for 4D Reconstruction of Non-Rigid Abdominal Surgical Scenes
Department of Translational Surgical Oncology, National Center for Tumor Diseases (NCT), NCT/UCC Dresden, a partnership between DKFZ, Faculty of Medicine and University Hospital Carl Gustav Carus, TUD Dresden University of Technology, and Helmholtz-Zentrum Dresden-Rossendorf (HZDR), Dresden, Germany（转化外科肿瘤中心部门，肿瘤疾病国家中心（NCT），NCT/UCC德累斯顿，由DKFZ、医学院和卡尔·戈斯瓦尔德·卡尔医院、德累斯顿技术大学以及德累斯顿-罗斯恩多夫赫尔姆霍兹中心（HZDR）组成的合作机构，德累斯顿，德国）；Department of Translational Surgical Oncology, NCT/UCC Dresden, Faculty of Medicine and University Hospital Carl Gustav Carus, TUD Dresden University of Technology（转化外科肿瘤中心部门，NCT/UCC德累斯顿，医学院和卡尔·戈斯瓦尔德·卡尔医院，德累斯顿技术大学）；Department for Visceral, Thoracic and Vascular Surgery, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden（visceral、胸腔和血管外科部门，医学院和卡尔·戈斯瓦尔德·卡尔医院，德累斯顿技术大学）；Centre for Tactile Internet with Human-in-the-Loop (CeTI), Technical University Dresden（人机交互触觉互联网中心（CeTI），德累斯顿技术大学）；Department of Computer Science and Engineering, The Chinese University of Hong Kong（计算机科学与工程部门，香港中文大学）
The Chinese University of Hong Kong（香港中文大学）；Brigham and Women’s Hospital（布莱根妇女医院）；Harvard Medical School（哈佛医学院）；Tencent Jarvis Lab（腾讯医疗健康（深圳）有限公司（腾讯医疗AI实验室/腾讯天衍实验室））；Tsinghua University（清华大学）；Shenzhen International Graduate School, Tsinghua University（清华大学深圳国际研究生院）
In order to tackle the difficulty associated with the ill-posed nature of the image registration problem, regularization is often used to constrain the solution space. For most learning-based registration approaches, the regularization usually has a fixed weight and only constrains the spatial transformation. Such convention has two limitations: (i) Besides the laborious grid search for the optimal fixed weight, the regularization strength of a specific image pair should be associated with the content of the images, thus the "one value fits all" training scheme is not ideal; (ii) Only spatiall…
Swinburne University of Technology（斯威本科技大学）；Victoria University（维多利亚大学）；Kyung Hee University（庆熙大学）
Quantitative assessment of the abdominal region from clinically acquired CT scans requires the simultaneous segmentation of abdominal organs. Thanks to the availability of high-performance computational resources, deep learning-based methods have resulted in state-of-the-art performance for the segmentation of 3D abdominal CT scans. However, the complex characterization of organs with fuzzy boundaries prevents the deep learning methods from accurately segmenting these anatomical organs. Specifically, the voxels on the boundary of organs are more vulnerable to misprediction due to the highly-va…
Automatic Recognition of Abdominal Organs in Ultrasound Images based on Deep Neural Networks and K-Nearest-Neighbor Classification
The Chinese University of Hong Kong（香港中文大学）；Southern University of Science and Technology（南方科技大学）；Shenzhen Research Institute of the Chinese University of Hong Kong（香港中文大学深圳研究院）
Objective : Abdominal anatomy segmentation is crucial for numerous applications from computer-assisted diagnosis to image-guided surgery. In this context, we address fully-automated multi-organ segmentation from abdominal CT and MR images using deep learning. Methods: The proposed model extends standard conditional generative adversarial networks. Additionally to the discriminator which enforces the model to create realistic organ delineations, it embeds cascaded partially pre-trained convolutional encoder-decoders as generator. Encoder fine-tuning from a large amount of non-medical images all…
A two-step concept for 3D segmentation on 5 abdominal organs inside volumetric CT images is presented. First each relevant organ's volume of interest is extracted as bounding box. The extracted volume acts as input for a second stage, wherein two compared U-Nets with different architectural dimensions re-construct an organ segmentation as label mask. In this work, we focus on comparing 2D U-Nets vs. 3D U-Net counterparts. Our initial results indicate Dice improvements of about 6\% at maximum. In this study to our surprise, liver and kidneys for instance were tackled significantly better using …
Automated abdominal multi-organ segmentation is a crucial yet challenging task in the computer-aided diagnosis of abdominal organ-related diseases. Although numerous deep learning models have achieved remarkable success in many medical image segmentation tasks, accurate segmentation of abdominal organs remains challenging, due to the varying sizes of abdominal organs and the ambiguous boundaries among them. In this paper, we propose a boundary-aware network (BA-Net) to segment abdominal organs on CT scans and MRI scans. This model contains a shared encoder, a boundary decoder, and a segmentati…
The University of Hong Kong（香港大学）；Shenzhen Research Institute of Big Data, The Chinese University of Hong Kong (Shenzhen)（香港中文大学（深圳）深圳大数据研究院）；Longgang Central Hospital of Shenzhen（深圳龙岗中心医院）；Longgang People Hospital of Shenzhen（深圳龙岗人民医院）
Despite the considerable progress in automatic abdominal multi-organ segmentation from CT/MRI scans in recent years, a comprehensive evaluation of the models' capabilities is hampered by the lack of a large-scale benchmark from diverse clinical scenarios. Constraint by the high cost of collecting and labeling 3D medical data, most of the deep learning models to date are driven by datasets with a limited number of organs of interest or samples, which still limits the power of modern deep models and makes it difficult to provide a fully comprehensive and fair estimate of various methods. To miti…
Anatomy-Informed Deep Learning for Abdominal Aortic Aneurysm Segmentation
Faculty of Mathematics, Informatics and Technology, University of Applied Sciences Koblenz（科布伦茨应用科学大学数学、信息学与技术学院）；Department of Radiology, Herz-Jesu-Krankenhaus（赫茨-耶苏医院放射科）
Muroran Institute of Technology（室兰工业大学）；Niigata University of Health and Welfare（新潟医疗福祉大学）
To promote the development of medical image segmentation technology, AMOS, a large-scale abdominal multi-organ dataset for versatile medical image segmentation, is provided and AMOS 2022 challenge is held by using the dataset. In this report, we present our solution for the AMOS 2022 challenge. We employ residual U-Net with deep super vision as our base model. The experimental results show that the mean scores of Dice similarity coefficient and normalized surface dice are 0.8504 and 0.8476 for CT only task and CT/MRI task, respectively.
Accurate and robust abdominal multi-organ segmentation from CT imaging of different modalities is a challenging task due to complex inter- and intra-organ shape and appearance variations among abdominal organs. In this paper, we propose a probabilistic multi-organ segmentation network with hierarchical spatial-wise feature modulation to capture flexible organ semantic variants and inject the learnt variants into different scales of feature maps for guiding segmentation. More specifically, we design an input decomposition module via a conditional variational auto-encoder to learn organ-specific…
Armed Forces Yangju Hospital（杨州武装部队医院）；Seoul National University（首尔国立大学）
For more clinical applications of deep learning models for medical image segmentation, high demands on labeled data and computational resources must be addressed. This study proposes a coarse-to-fine framework with two teacher models and a student model that combines knowledge distillation and cross teaching, a consistency regularization based on pseudo-labels, for efficient semi-supervised learning. The proposed method is demonstrated on the abdominal multi-organ segmentation task in CT images under the MICCAI FLARE 2022 challenge, with mean Dice scores of 0.8429 and 0.8520 in the validation …
The Chinese University of Hong Kong（香港中文大学）；University of Leicester（莱斯特大学）
Domain adaptation is crucial for transferring the knowledge from the source labeled CT dataset to the target unlabeled MR dataset in abdominal multi-organ segmentation. Meanwhile, it is highly desirable to avoid the high annotation cost related to the target dataset and protect the source dataset privacy. Therefore, we propose an effective source-free unsupervised domain adaptation method for cross-modality abdominal multi-organ segmentation without source dataset access. The proposed framework comprises two stages. In the first stage, the feature map statistics-guided model adaptation combine…
University of Electronic Science and Technology of China（电子科技大学）；Shanghai Artificial Intelligence Laboratory（上海人工智能实验室）；Sichuan Cancer Hospital and Institute（四川省肿瘤医院（四川省肿瘤研究所））；Sichuan Cancer Center（四川省癌症中心）；Sichuan University（四川大学）；West China Hospital（华西医院）；Johns Hopkins University（约翰斯·霍普金斯大学）；SenseTime Research（商汤科技研究院）；Rutgers University（罗格斯大学）
Whole abdominal organ segmentation is important in diagnosing abdomen lesions, radiotherapy, and follow-up. However, oncologists' delineating all abdominal organs from 3D volumes is time-consuming and very expensive. Deep learning-based medical image segmentation has shown the potential to reduce manual delineation efforts, but it still requires a large-scale fine annotated dataset for training, and there is a lack of large-scale datasets covering the whole abdomen region with accurate and detailed annotations for the whole abdominal organ segmentation. In this work, we establish a new large-s…
Fosun Aitrox Information Technology Co LTD（复星艾特罗克斯信息技术有限公司）
The contextual information, presented in abdominal CT scan, is relative consistent. In order to make full use of the overall 3D context, we develop a whole-volume-based coarse-to-fine framework for efficient and effective abdominal multi-organ segmentation. We propose a new efficientSegNet network, which is composed of basic encoder, slim decoder and efficient context block. For the decoder module, anisotropic convolution with a k*k*1 intra-slice convolution and a 1*1*k inter-slice convolution, is designed to reduce the computation burden. For the context block, we propose strip pooling module…
AbdomenGen: Sequential Volume-Conditioned Diffusion Framework for Abdominal Anatomy Generation
Center for Virtual Imaging Trials, Dept. of Radiology, Duke University School of Medicine（虚拟成像试验中心，放射科，杜克大学医学部）；Dept. of Electrical and Computer Engineering, Pratt School of Engineering, Duke University（电气与计算机工程系，普拉特工程学院，杜克大学）；Dept. of Physics, Trinity School of Arts and Sciences, Duke University（物理系，特里尼蒂艺术与科学学院，杜克大学）
AbdomenGen提出了一种序列体积条件扩散框架，通过Volume Control Scalar实现可控的腹部解剖生成，实现了高几何保真度和多器官解耦调节。
ThreshGuide: Class-Aware Labeled-Guided Thresholding for Semi-Supervised 3D Abdominal Multi-Organ Segmentation
School of Intelligent Science and Technology, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences（中国科学院大学杭州高等研究院智能科学与技术学院）
Seoul National University（首尔国立大学）；Soongsil University（崇实大学）
Recent works in medical image segmentation have actively explored various deep learning architectures or objective functions to encode high-level features from volumetric data owing to limited image annotations. However, most existing approaches tend to ignore cross-volume global context and define context relations in the decision space. In this work, we propose a novel voxel-level Siamese representation learning method for abdominal multi-organ segmentation to improve representation space. The proposed method enforces voxel-wise feature relations in the representation space for leveraging li…
Nanjing University of Science and Technology（南京理工大学）；Institute of Computing Technology, Chinese Academy of Sciences（中国科学院计算技术研究所）；University of Chinese Academy of Sciences（中国科学院大学）；Lenovo Research（联想研究院）；Nanjing University of Information Science and Technology（南京信息工程大学）；Shenzhen Haichuang Medical CO., LTD.（深圳海创医疗有限公司）；Jiangsu University of Technology（江苏理工学院）；Beihang University（北京航空航天大学）；Beijing Infervision Technology CO. LTD.（北京推想科技有限公司）；Tianjin University of Technology（天津理工大学）；Norwegian University of Science and Technology（挪威科技大学）；Nanjing University（南京大学）；Suzhou LungCare Medical Technology Co., Ltd（苏州朗润医疗科技有限公司）；King Abdullah University of Science and Technology（阿卜杜拉国王科技大学）
With the unprecedented developments in deep learning, automatic segmentation of main abdominal organs seems to be a solved problem as state-of-the-art (SOTA) methods have achieved comparable results with inter-rater variability on many benchmark datasets. However, most of the existing abdominal datasets only contain single-center, single-phase, single-vendor, or single-disease cases, and it is unclear whether the excellent performance can generalize on diverse datasets. This paper presents a large and diverse abdominal CT organ segmentation dataset, termed AbdomenCT-1K, with more than 1000 (1K…
The majority of current research in deep learning based image registration addresses inter-patient brain registration with moderate deformation magnitudes. The recent Learn2Reg medical registration benchmark has demonstrated that single-scale U-Net architectures, such as VoxelMorph that directly employ a spatial transformer loss, often do not generalise well beyond the cranial vault and fall short of state-of-the-art performance for abdominal or intra-patient lung registration. Here, we propose two straightforward steps that greatly reduce this gap in accuracy. First, we employ keypoint self-s…
A Multi-Center Benchmark for Abdominal Disease Diagnosis and Report Generation from Non-Contrast CT
Ain Shams University（艾因夏姆斯大学）；The Hong Kong University of Science and Technology（香港科技大学）；University of Catania（卡塔尼亚大学）；Universitat de Barcelona（巴塞罗那大学）
Nagoya University（名古屋大学）；German Cancer Research Center (DKFZ)（德国癌症研究中心）；University Hospital Erlangen（埃尔朗根大学医院）；Paracelsus Medical University（帕拉塞尔苏斯医科大学）
Automatic multi-organ segmentation of the dual energy computed tomography (DECT) data can be beneficial for biomedical research and clinical applications. However, it is a challenging task. Recent advances in deep learning showed the feasibility to use 3-D fully convolutional networks (FCN) for voxel-wise dense predictions in single energy computed tomography (SECT). In this paper, we proposed a 3D FCN based method for automatic multi-organ segmentation in DECT. The work was based on a cascaded FCN and a general model for the major organs trained on a large set of SECT data. We preprocessed th…
Nagoya University（名古屋大学）；Aichi Cancer Center（爱知县癌症中心）；National Institute of Informatics（国立信息学研究所）
Recent advances in deep learning, like 3D fully convolutional networks (FCNs), have improved the state-of-the-art in dense semantic segmentation of medical images. However, most network architectures require severely downsampling or cropping the images to meet the memory limitations of today's GPU cards while still considering enough context in the images for accurate segmentation. In this work, we propose a novel approach that utilizes auto-context to perform semantic segmentation at higher resolutions in a multi-scale pyramid of stacked 3D FCNs. We train and validate our models on a dataset …
Tsinghua University（清华大学）；Shenzhen International Graduate School（深圳国际研究生院）；Harvard Medical School（哈佛医学院）；Brigham and Women’s Hospital（布莱根妇女医院）
The loss function of an unsupervised multimodal image registration framework has two terms, i.e., a metric for similarity measure and regularization. In the deep learning era, researchers proposed many approaches to automatically learn the similarity metric, which has been shown effective in improving registration performance. However, for the regularization term, most existing multimodal registration approaches still use a hand-crafted formula to impose artificial properties on the estimated deformation field. In this work, we propose a unimodal cyclic regularization training pipeline, which …
Deformable Image Registration (DIR) of MR and CT images is one of the most challenging registration task, due to the inherent structural differences of the modalities and the missing dense ground truth. Recently cycle Generative Adversarial Networks (cycle-GANs) have been used to learn the intensity relationship between these 2 modalities for unpaired brain data. Yet its usefulness for DIR was not assessed. In this study we evaluate the DIR performance for thoracic and abdominal organs after synthesis by cycle-GAN. We show that geometric changes, which differentiate the two populations (e.g. i…
Nagoya University（名古屋大学）；Aichi Cancer Center Hospital（爱知县癌症中心医院）
Deep learning-based methods achieved impressive results for the segmentation of medical images. With the development of 3D fully convolutional networks (FCNs), it has become feasible to produce improved results for multi-organ segmentation of 3D computed tomography (CT) images. The results of multi-organ segmentation using deep learning-based methods not only depend on the choice of networks architecture, but also strongly rely on the choice of loss function. In this paper, we present a discussion on the influence of Dice-based loss functions for multi-class organ segmentation using a dataset …
The University of Manchester（曼彻斯特大学）；The Christie NHS Foundation Trust（克里斯蒂NHS基金会信托）
Abdominal organ segmentation is a difficult and time-consuming task. To reduce the burden on clinical experts, fully-automated methods are highly desirable. Current approaches are dominated by Convolutional Neural Networks (CNNs) however the computational requirements and the need for large data sets limit their application in practice. By implementing a small and efficient custom 3D CNN, compiling the trained model and optimizing the computational graph: our approach produces high accuracy segmentations (Dice Similarity Coefficient (%): Liver: 97.3$\pm$1.3, Kidneys: 94.8$\pm$3.6, Spleen: 96.4…
TotalRegistrator: Towards a Lightweight Foundation Model for CT Image Registration
Department of Imaging, Radboudumc, Nijmegen, the Netherlands（影像部，Radboudumc，尼姆egen，荷兰）；Institute for Medical Informatics, University of Lübeck, Lübeck, Germany（医学信息研究所，吕贝克大学，吕贝克，德国）；Department of Nuclear Medicine, Hospital 108, Hanoi, Vietnam（核医学部，108医院，河内，越南）；Department of Diagnostic Imaging and Interventional Radiology, Thai Nguyen National Hospital, Thai Nguyen, Vietnam（诊断影像和介入放射科，Thai Nguyen国家医院，Thai Nguyen，越南）；Interventional Radiology Center, Tam Anh Hospital, Hanoi, Vietnam（介入放射科中心，Tam Anh医院，河内，越南）；FET, Vietnam National University, University of Engineering and Technology, Hanoi, Vietnam（FET，越南国家大学，工程与技术大学，河内，越南）
National Institutes of Health Clinical Center（美国国立卫生研究院临床中心）
Organ segmentation is a prerequisite for a computer-aided diagnosis (CAD) system to detect pathologies and perform quantitative analysis. For anatomically high-variability abdominal organs such as the pancreas, previous segmentation works report low accuracies when comparing to organs like the heart or liver. In this paper, a fully-automated bottom-up method is presented for pancreas segmentation, using abdominal computed tomography (CT) scans. The method is based on a hierarchical two-tiered information propagation by classifying image patches. It labels superpixels as pancreas or not via poo…
Beijing University of Posts and Telecommunications（北京邮电大学）；Guilin University of Electronic Technology（桂林电子科技大学）
Abdominal organ segmentation has many important clinical applications, such as organ quantification, surgical planning, and disease diagnosis. However, manually annotating organs from CT scans is time-consuming and labor-intensive. Semi-supervised learning has shown the potential to alleviate this challenge by learning from a large set of unlabeled images and limited labeled samples. In this work, we follow the self-training strategy and employ a high-performance hybrid architecture (PHTrans) consisting of CNN and Swin Transformer for the teacher model to generate precise pseudo labels for unl…
Devil is in Details: Locality-Aware 3D Abdominal CT Volume Generation for Self-Supervised Organ Segmentation
National Engineering Research Center for Multimedia Software（多媒体软件国家工程研究中心）；Hubei Key Laboratory of Multimedia and Network Communication Engineering（湖北省多媒体与网络通信工程重点实验室）；Institute of Artificial Intelligence（人工智能研究院）；School of Computer Science（计算机科学学院）
Multi-planar 2D-U-Net Segmentation of 3D-CT Abdominal Organs augmented by Spatial Occurrence Maps
Glasgow Caledonian University School of Science & Engineering（格拉斯哥卡里多尼亚大学科学与工程学院）；Jade University of Applied Sciences Department of Engineering & Medical Technology（雅德应用科学大学工程与医疗技术系）
Accurate and robust segmentation of abdominal organs on CT is essential for many clinical applications such as computer-aided diagnosis and computer-aided surgery. But this task is challenging due to the weak boundaries of organs, the complexity of the background, and the variable sizes of different organs. To address these challenges, we introduce a novel framework for multi-organ segmentation by using organ-attention networks with reverse connections (OAN-RCs) which are applied to 2D views, of the 3D CT volume, and output estimates which are combined by statistical fusion exploiting structur…
Vanderbilt University（范德堡大学）；Sigma Technology（12西格玛技术公司）；Vanderbilt University Medical Center（范德堡大学医学中心）
Abdominal multi-organ segmentation of computed tomography (CT) images has been the subject of extensive research interest. It presents a substantial challenge in medical image processing, as the shape and distribution of abdominal organs can vary greatly among the population and within an individual over time. While continuous integration of novel datasets into the training set provides potential for better segmentation performance, collection of data at scale is not only costly, but also impractical in some contexts. Moreover, it remains unclear what marginal value additional data have to off…
Automatic liver segmentation plays an important role in computer-aided diagnosis and treatment. Manual segmentation of organs is a difficult and tedious task and so prone to human errors. In this paper, we propose an adaptive 3D region growing with subject-specific conditions. For this aim we use the intensity distribution of most probable voxels in prior map along with location prior. We also incorporate the boundary of target organs to restrict the region growing. In order to obtain strong edges and high contrast, we propose an effective contrast enhancement algorithm to facilitate more accu…
Dokuz Eylul University（多库兹·埃吕尔大学）；Ca’ Foscari University of Venice（威尼斯大学）；Ege University（爱琴海大学）；IMT Atlantique（大西洋国立高等工业技术学院）；Median Technologies（Median科技公司）；University of Duisburg-Essen（杜伊斯堡-埃森大学）；Otto von Guericke University（奥托·冯·格里克大学）；Middle East Technical University（中东技术大学）；Johns Hopkins University（约翰斯·霍普金斯大学）
Segmentation of abdominal organs has been a comprehensive, yet unresolved, research field for many years. In the last decade, intensive developments in deep learning (DL) have introduced new state-of-the-art segmentation systems. In order to expand the knowledge on these topics, the CHAOS - Combined (CT-MR) Healthy Abdominal Organ Segmentation challenge has been organized in conjunction with IEEE International Symposium on Biomedical Imaging (ISBI), 2019, in Venice, Italy. CHAOS provides both abdominal CT and MR data from healthy subjects for single and multiple abdominal organ segmentation. F…
Deformable registration consists of finding the best dense correspondence between two different images. Many algorithms have been published, but the clinical application was made difficult by the high calculation time needed to solve the optimisation problem. Deep learning overtook this limitation by taking advantage of GPU calculation and the learning process. However, many deep learning methods do not take into account desirable properties respected by classical algorithms. In this paper, we present MICS, a novel deep learning algorithm for medical imaging registration. As registration is an…
Vanderbilt University（范德堡大学）；Vanderbilt University Medical Center（范德堡大学医学中心）
Non-contrast computed tomography (NCCT) is commonly acquired for lung cancer screening, assessment of general abdominal pain or suspected renal stones, trauma evaluation, and many other indications. However, the absence of contrast limits distinguishing organ in-between boundaries. In this paper, we propose a novel unsupervised approach that leverages pairwise contrast-enhanced CT (CECT) context to compute non-contrast segmentation without ground-truth label. Unlike generative adversarial approaches, we compute the pairwise morphological context with CECT to provide teacher guidance instead of…
