We present a study of the linear properties of ion temperature gradient (ITG) modes with collisions modelled by the linearized gyrokinetic (GK) Coulomb collision operator (Frei et al. 2021) in the local limit. The study is based on a Hermite-Laguerre polynomial expansion of the perturbed ion distribution function applied to the linearized GK Boltzmann equation, yielding a hierarchy of coupled equations for the expansion coefficients, referred to as gyro-moments. We explore analytically the collisionless and high-collisional limits of the gyro-moment hierarchy. Parameter scans revealing the dependence of the ITG growth rate on the collisionality are reported, showing strong damping at small scales as the collisionality increases. These properties are compared with the predictions based on the Sugama, the momentum-conserving pitch-angle scattering, the Hirshman- Sigmar-Clarke, and the Daugherty collision operators. The importance of finite Larmor radius (FLR) terms in the collision operators is pointed out by the appearance of a short wavelength (SW) ITG branch when collisional FLR terms are neglected, this branch being completely suppressed by collisional FLR effects. We demonstrate that energy diffusion is important at high collisionality and small scale lengths and that, among the collision operators considered in this work, the GK Sugama collision operator yields, in general, the smallest deviation on the ITG growth rate compared to the GK Coulomb collision operator. Convergence studies of the gyro-moment method are reported.
We present a formulation of collisional gyrokinetic theory with exact conservation laws for energy and canonical toroidal momentum. Collisions are accounted for by a nonlinear gyrokinetic Landau operator. Gyroaveraging and linearization do not destroy the operator's conservation properties. Just as in ordinary kinetic theory, the conservation laws for collisional gyrokinetic theory are selected by the limiting collisionless gyrokinetic theory.
In purely non-dissipative systems, Lagrangian and Hamiltonian reduction have proven to be powerful tools for deriving physical models with exact conservation laws. We have discovered a hint that an analogous reduction method exists also for dissipative systems that respect the First and Second Laws of Thermodynamics. In this paper, we show that modern electrostatic gyrokinetics, a reduced plasma turbulence model, exhibits a serendipitous metriplectic structure. Metriplectic dynamics in general is a well developed formalism for extending the concept of Poisson brackets to dissipative systems. B…
Effects of collisions on conservation laws for toroidal plasmas are investigated based on the gyrokinetic field theory. Associating the collisional system with a corresponding collisionless system at a given time such that the two systems have the same distribution functions and electromagnetic fields instantaneously, it is shown how the collisionless conservation laws derived from Noether's theorem are modified by the collision term. Effects of the external source term added into the gyrokinetic equation can be formulated similarly with the collisional effects. Particle, energy, and toroidal …
Linear gyro-kinetic simulations of the classical tearing mode in three-dimensional toroidal geometry were performed using the global gyro kinetic turbulence code, GKW . The results were benchmarked against a cylindrical ideal MHD and analytical theory calculations. The stability, growth rate and frequency of the mode were investigated by varying the current profile, collisionality and the pressure gradients. Both collision-less and semi-collisional tearing modes were found with a smooth transition between the two. A residual, finite, rotation frequency of the mode even in the absense of a pres…
Applying gyrokinetic simulations for theoretical turbulence and transport studies to the plasma edge and scrape-off layer (SOL) presents significant challenges. To in particular account for steep density and temperature gradients in the SOL, the "full-f" code PICLS was developed. PICLS is a gyrokinetic particle-in-cell (PIC) code and is based on an electrostatic model with a linearized field equation and uses kinetic electrons. In previously published results we were applying PICLS to the well-studied 1D parallel transport problem during an edge-localized mode (ELM) in the SOL without collisio…
This letter reports on a metriplectic formulation of collisional, nonlinear full-$f$ electromagnetic gyrokinetic theory compliant with energy conservation and monotonic entropy production. In an axisymmetric background magnetic field, the toroidal angular momentum is also conserved. Notably, a new collisional current, contributing to the gyrokinetic Maxwell-Ampère equation and the gyrokinetic charge conservation law, is discovered.
Many plasmas of interest to the astrophysical and fusion communities are weakly collisional. In such plasmas, small scales can develop in the distribution of particle velocities, potentially affecting observable quantities such as turbulent fluxes. Consequently, it is necessary to monitor velocity space resolution in gyrokinetic simulations. In this paper, we present a set of computationally efficient diagnostics for measuring velocity space resolution in gyrokinetic simulations and apply them to a range of plasma physics phenomena using the continuum gyrokinetic code GS2. For the cases consid…
A set of key properties for an ideal dissipation scheme in gyrokinetic simulations is proposed, and implementation of a model collision operator satisfying these properties is described. This operator is based on the exact linearized test-particle collision operator, with approximations to the field-particle terms that preserve conservation laws and an H-Theorem. It includes energy diffusion, pitch-angle scattering, and finite Larmor radius effects corresponding to classical (real-space) diffusion. The numerical implementation in the continuum gyrokinetic code GS2 is fully implicit and guarant…
Linear gyrokinetic simulations covering the collisional -- collisionless transitional regime of the tearing instability are performed. It is shown that the growth rate scaling with collisionality agrees well with that predicted by a two-fluid theory for a low plasma beta case in which ion kinetic dynamics are negligible. Electron wave-particle interactions (Landau damping), finite Larmor radius, and other kinetic effects invalidate the fluid theory in the collisionless regime, in which a general non-polytropic equation of state for pressure (temperature) perturbations should be considered. We …
Particle transport due to Ion Temperature Gradient/Trapped Electron (ITG/TE) mode turbulence is investigated using the gyrokinetic code GENE. Both a reduced quasilinear (QL) treatment and nonlinear (NL) simulations are performed for typical tokamak parameters corresponding to ITG dominated turbulence. A selfconsistent treatment is used, where the stationary local profiles are calculated corresponding to zero particle flux simultaneously for electrons and trace impurities. The scaling of the stationary profiles with magnetic shear, safety factor, electron-to-ion temperature ratio, collisionalit…
This work reports on the development and numerical implementation of the linear electromagnetic gyrokinetic (GK) model in a tokamak flux-tube geometry using a moment approach based on the expansion of the perturbed distribution function on a velocity-space Hermite-Laguerre polynomials basis. A hierarchy of equations of the expansion coefficients, referred to as the gyro-moments (GM), is derived. We verify the numerical implementation of the GM hierarchy in the collisionless limit by performing a comparison with the continuum GK code GENE, recovering the linear properties of the ion-temperature…
In magnetized plasmas, a turbulent cascade occurs in phase space at scales smaller than the thermal Larmor radius ("sub-Larmor scales") [Phys. Rev. Lett. 103, 015003 (2009)]. When the turbulence is restricted to two spatial dimensions perpendicular to the background magnetic field, two independent cascades may take place simultaneously because of the presence of two collisionless invariants. In the present work, freely decaying turbulence of two-dimensional electrostatic gyrokinetics is investigated by means of phenomenological theory and direct numerical simulations. A dual cascade (forward a…
Nonlinear gyrokinetics provides a suitable framework to describe short-wavelength turbulence in magnetized laboratory and astrophysical plasmas. In the electrostatic limit, this system is known to exhibit a free energy cascade towards small scales in (perpendicular) real and/or velocity space. The dissipation of free energy is always due to collisions (no matter how weak the collisionality), but may be spread out across a wide range of scales. Here, we focus on freely-decaying 2D electrostatic turbulence on sub-ion-gyroradius scales. An existing scaling theory for the turbulent cascade in the …
Gyrokinetic turbulence is subject to the constraint that the turbulent charge flux vanishes. This is interpreted, in detail, as arising from momentum conservation at the fluctuation scale. There are beautiful and deep analogies with the classical transport from Coulomb collisions.
The gyrokinetic stability of electron-positron plasmas contaminated by ion (proton) admixture is studied in slab geometry. The appropriate dispersion relation is derived and solved. The ion-temperature-gradient driven instability, the electron-temperature-gradient driven instability, the universal mode, and the shear Alfven wave are considered. The contaminated plasma remains stable if the contamination degree is below some threshold, and it is found that the shear Alfven wave can be present in a contaminated plasma in cases where it is absent without ion contamination.
We present a new method for formulating closures that learn from kinetic simulation data. We apply this method to phase mixing in a simple gyrokinetic turbulent system - temperature gradient driven turbulence in an unsheared slab. The closure, called the learned multi-mode (LMM) closure, is constructed by, first, extracting an optimal basis from a nonlinear kinetic simulation using singular value decomposition (SVD). Subsequent nonlinear fluid simulations are projected onto this basis and the results are used to formulate the closure. We compare the closure with other closures schemes over a b…
We present a modified gyrokinetic theory to predict the critical gradient that determines the linear onset of the ion temperature gradient (ITG) mode in stellarator plasmas. A coarse-graining technique is applied to the drift curvature, entering the standard gyrokinetic equations, around local minima. Thanks to its simplicity, this novel formalism yields an estimate for the critical gradient with a computational cost low enough for application to stellarator optimization. On comparing against a gyrokinetic solver, our results show good agreement for an assortment of stellarator designs. Insigh…
XGC (X-point Gyrokinetic Code) is a whole-volume, total-f gyrokinetic particle-in-cell code developed for modelling tokamaks. In recent work, XGC has been extended to model more general 3D toroidal magnetic configurations, such as stellarators. These improvements have resulted in the XGC-S version. In this paper, XGC-S is benchmarked for linear electrostatic ion temperature gradient-driven microinstabilities, which can underlie turbulent transport in stellarators. An initial benchmark of XGC-S in tokamak geometry shows good agreement with the XGC1, ORB5, and global GENE codes. A benchmark betw…
Gyrokinetic simulations in the collisionless limit demonstrate the physical mechanisms and the amplitude of the current driven by turbulence. Simulation results show the spatio-temporal variation of the turbulence driven current and its connection to the divergence of the Reynolds stress and the turbulence acceleration. Fine structures (a few ion Larmor radii) of the turbulence induced current are observed near the rational surfaces with the arbitrary wavelength solver of the quasi-neutrality equation. The divergence of the Reynolds stress plays a major role in the generation of these fine str…
The derivation and numerical implementation of a linearized version of the gyrokinetic (GK) Coulomb collision operator (Jorge R. et al., J. Plasma Phys. 85, 905850604 (2019)) and of the widely-used linearized GK Sugama collision operator (Sugama H. et al., Phys. Plasmas 16, 112503 (2009)) is reported. An approach based on a Hermite-Laguerre moment expansion of the perturbed gyrocenter distribution function is used, referred to as gyro-moment expansion. This approach allows considering arbitrary perpendicular wavenumber and expressing the two linearized GK operators as a linear combination of g…
Nonlinear saturation of toroidal Alfven eigenmode (TAE) via ion induced scatterings is investigated in the short-wavelength gyrokinetic regime. It is found that the nonlinear evolution depends on the thermal ion \b{eta} value. Here, \b{eta} is the plasma thermal to magnetic pressure ratio. Both the saturation levels and associated energetic-particle transport coefficients are derived and estimated correspondingly.
The cold ion limit of the local gyrokinetic model is rigorously taken to produce a nonlinear system of fluid equations that includes background flow shear. No fluid closure is required. By considering a simple slab geometry with magnetic drifts, but no magnetic shear, these fluid equations reduce to the Charney-Hasegawa-Mima model in the presence of flow shear. Analytic solutions to this model are found to study the impact of ExB flow shear on the stability of a single Parallel Velocity Gradient (PVG) driven mode. Additionally, the model is used to investigate the effect of background ExB flow…
We propose a novel derivation of the gyrokinetic field-particle Lagrangian for non-collisional ion-electron plasmas in a magnetic background with strong variations (maximal ordering). Our approach follows the two-step reduction process, where the guiding-center coordinate transformation is followed by the gyrocenter coordinate transformation in the single-particle phase space. For the first time both steps are addressed within a unique methodology, based on near-identity coordinate transformations constructed as polynomial transforms. These are well-defined transformations composed of a finite…
Fast ions have recently been found to significantly impact and partially suppress plasma turbulence both in experimental and numerical studies in a number of scenarios. Understanding the underlying physics and identifying the range of their beneficial effect is an essential task for future fusion reactors, where highly energetic ions are generated through fusion reactions and external heating schemes. However, in many of the gyrokinetic codes fast ions are, for simplicity, treated as equivalent-Maxwellian-distributed particle species, although it is well known that to rigorously model highly n…
Hamiltonian structure is pursued and uncovered in collisional and collisionless gyrokinetic theory. A new Hamiltonian formulation of collisionless electromagnetic theory is presented that is ideally suited to implementation on modern supercomputers. The method used to uncover this structure is described in detail and applied to a number of examples, where several well-known plasma models are endowed with a Hamiltonian structure for the first time. The first energy- and momentum-conserving formulation of full-F collisional gyrokinetics is presented. In an effort to understand the theoretical un…
Adopting the theoretical framework for the generalized fishbonelike dispersion relation, an extended hybrid magnetohydrodynamics gyrokinetic simulation model has been derived analytically by taking into account both thermal ion compressibility and diamagnetic effects in addition to energetic particle kinetic behaviors. The extended model has been used for implementing an eXtended version of Hybrid Magnetohydrodynamics Gyrokinetic Code (XHMGC) to study thermal ion kinetic effects on Alfvénic modes driven by energetic particles, such as kinetic beta induced Alfvén eigenmodes in tokamak fusion pl…
The kinetic effects of electrons are important to long wavelength magnetohydrodynamic(MHD)instabilities and short wavelength drift-Alfvenic instabilities responsible for turbulence transport in magnetized plasmas, since the non-adiabatic electron can interact with, modify and drive the low frequency instabilities. A novel conservative split weight scheme is proposed for the electromagnetic simulation with drift kinetic electrons in tokamak plasmas, which shows great computational advantages that there is no numerical constrain of electron skin depth on the perpendicular grid size without sacri…
The global and electromagnetic gyrokinetic particle-in-cell code ORB5 is employed to investigate the self-consistent interactions between Alfvén modes (AM) and ion temperature gradient (ITG) turbulence in a magnetically confined plasma. Here, an axisymmetric magnetic equilibrium with reversed shear and large aspect ratio is considered. An AM with toroidal mode number n=5 is driven unstable by introducing a population of suprathermal ions. Once the AM saturates in the presence of the fully developed turbulence, the ion heat flux is dominated by the AM and its main harmonics. ITG-induced transpo…
Gyrokinetic simulations of magnetic reconnection are presented to investigate plasma heating for strongly magnetized, weakly collisional plasmas. For a low plasma beta case, parallel and perpendicular phase mixing strongly enhance energy dissipation yielding electron heating. Heating occurs for a long time period after a dynamical process of magnetic reconnection ended. For a higher beta case, the ratio of ion to electron dissipation rate increases, suggesting that ion heating (via phase-mixing) may become an important dissipation channel in high beta plasmas.
In this paper, we extend the multiscale approach developed in [Abel et. al., Rep. Prog. Phys., submitted] by exploiting the scale separation between ions and the electrons. The gyrokinetic equation is expanded in powers of the electron to ion mass ratio, which provides a rigorous method for deriving the reduced electron model. We prove that ion-scale electromagnetic turbulence cannot change the magnetic topology, and argue that to lowest order the magnetic field lies on fluctuating flux surfaces. These flux surfaces are used to construct magnetic coordinates, and in these coordinates a closed …
We study Landau damping in the 1+1D Vlasov-Poisson system using a Fourier-Hermite spectral representation. We describe the propagation of free energy in phase space using forwards and backwards propagating Hermite modes recently developed for gyrokinetics [Schekochihin et al. (2014)]. The change in the electric field corresponds to the net Hermite flux via a free energy evolution equation. In linear Landau damping, decay in the electric field corresponds to forward propagating Hermite modes; in nonlinear damping, the initial decay is followed by a growth phase characterised by the generation o…
A novel type of internal transport barrier (ITB) called F-ATB (fast ion-induced anomalous transport barrier) has been recently observed in state-of-the-art global gyrokinetic simulations on a properly optimized ASDEX Upgrade experiment [A. Di Siena et al. Phys. Rev. Lett. {\bf 127} 025002 (2021)]. Unlike the transport barriers previously reported in literature, the trigger mechanism for the F-ATB is a basically electrostatic wave-particle resonant interaction between supra-thermal particles - generated via ion cyclotron resonance heating (ICRH) - and ion scale plasma turbulence. This resonant …
Ion orbit loss is considered important for generating the radially inward electric field $E_r$ in a tokamak edge plasma. In particular, this effect is emphasized in diverted tokamaks with a magnetic X point. In neoclassical equilibria, Coulomb collisions can scatter ions onto loss orbits and generate a radially outward current, which in steady state is balanced by the radially inward current from viscosity. To quantitatively measure this loss-orbit current in an edge pedestal, an ion-orbit-flux diagnostic has been implemented in the axisymmetric version of the gyrokinetic particle-in-cell code…
We present a gyrokinetic theory for the electromagnetic waves and instabilities with frequencies much lower than the ion cyclotron frequency in finite-$β$ anisotropic uniform plasmas. Here, $β$ is the ratio between plasma and magnetic pressures. Kinetic effects due to both the finite Larmor radii and wave-particle resonances are fully kept in the analysis. Corresponding linear dispersion relation and wave polarizations, valid for general $β$ value and perpendicular wavelength, are then specifically derived for a bi-Maxwellian plasma. Analytic expressions for the criteria of kinetic firehose an…
We develop a gyrokinetic treatment for ions in the magnetic presheath, close to the plasma-wall boundary. We focus on magnetic presheaths with a small magnetic field to wall angle, $α\ll 1$ (in radians). Characteristic lengths perpendicular to the wall in such a magnetic presheath scale with the typical ion Larmor orbit size, $ρ_{\text{i}}$. The smallest scale length associated with variations parallel to the wall is taken to be across the magnetic field, and ordered $l = ρ_{\text{i}} / δ$, where $ δ\ll 1$ is assumed. The scale lengths along the magnetic field line are assumed so long that var…
In this work, we modify the standard flux tube simulation domain to include arbitrary ion gyroradius-scale variation in the radial profile of the safety factor. To determine how to appropriately include such a modification, we add a strong ion gyroradius-scale source (inspired by electron cyclotron current drive) to the Fokker-Planck equation, then perform a multi-scale analysis that distinguishes the fast electrons driven by the source from the slow bulk thermal electrons. This allows us to systematically derive the needed changes to the gyrokinetic model. We find new terms that adjust the io…
Recent experimental observations at JET show evidence of reduced ion temperature profile stiffness, hypothesised to be due to concomitant low magnetic shear (s) and significant toroidal rotational flow shear. Non-linear gyrokinetic simulations are performed, aiming to investigate the physical mechanism behind the observations. A comprehensive set of simulations are carried out, comparing the impact on the ion heat flux of various parameters that differ within the data-set. These parameters include q, s, rotation, effect of rotation on the magnetohydrodynamic (MHD) equilibrium, R/L_n, beta_e, Z…
We present a new model for simulating the electromagnetic fluctuations with frequencies much lower than the ion cyclotron frequency in plasmas confined in general magnetic configurations. This novel model (termed as GK-E&B) employs nonlinear gyrokinetic equations formulated in terms of electromagnetic fields along with momentum balance equations for solving fields. It, thus, not only includes kinetic effects, such as wave-particle interaction and microscopic (ion Larmor radius scale) physics; but also is computationally more efficient than the conventional formulation described in terms of pot…
As an alternative option to kinetic electrons, the gyrokinetic total-f particle-in-cell (PIC) code XGC1 has been extended to the MHD/fluid type electromagnetic regime by combining gyrokinetic PIC ions with massless drift-fluid electrons analogous to Chen and Parker, Physics of Plasmas 8, 441 (2001). Two representative long wavelength modes, shear Alfvén waves and resistive tearing modes, are verified in cylindrical and toroidal magnetic field geometries.
In magnetized plasma turbulence, the couplings of perpendicular spatial scales that arise due to the nonlinear interactions are analyzed from the perspective of the free-energy exchanges. The plasmas considered here, with appropriate ion or electron adiabatic electro-neutrality responses, are described by the gyrokinetic formalism in a toroidal magnetic geometry. Turbulence develops due to the electrostatic fluctuations driven by temperature gradient instabilities, either ion temperature gradient (ITG) or electron temperature gradient (ETG). The analysis consists in decomposing the system into…
A gyrokinetic simulation of the influence of electron cyclotron current drive and ion kinetic effect on the m/n=2/1 tearing mode (TM) instabilities is presented in HL-2A and DIII-D tokamak configurations. The TM evolution is calculated with a finite mass electron model and the rf current source is obtained by ray-tracing and the Fokker-Planck method. The TMs are found to be perfectly stabilized by a continuous 1MW 68GHz X2-mode in HL-2A tokamak, while instabilities in the DIII-D discharge (with lower value of CR=I_{rf}/I_{0}, where Irf is the wave driven current and I0 is the equilibrium plasm…
The linear destabilization and nonlinear saturation of energetic-particle driven Alfvénic instabilities in tokamaks strongly depend on the damping channels. In this work, the collisionless damping mechanisms of Alfvénic modes are investigated within a gyrokinetic framework, by means of global simulations with the particle-in-cell code ORB5, and compared with the eigenvalue code LIGKA and reduced models. In particular, the continuum damping and the Landau damping (of ions and electrons) are considered. The electron Landau damping is found to be dominant on the ion Landau damping for experimenta…
Magnetic reconnection and associated heating of ions and electrons in strongly magnetised, weakly collisional plasmas are studied by means of gyrokinetic simulations. It is shown that an appreciable amount of the released magnetic energy is dissipated to yield (irreversible) electron and ion heating via phase mixing. Electron heating is mostly localized to the magnetic island, not the current sheet, and occurs after the dynamical reconnection stage. Ion heating is comparable to electron heating only in high-beta plasmas, and results from both parallel phase mixing and perpendicular phase mixin…
We present a theoretical framework for plasma turbulence in astrophysical plasmas (solar wind, interstellar medium, galaxy clusters, accretion disks). The key assumptions are that the turbulence is anisotropic with respect to the mean magnetic field and frequencies are low compared to the ion cyclotron frequency. The energy injected at the outer scale scale has to be converted into heat, which ultimately cannot be done without collisions. A KINETIC CASCADE develops that brings the energy to collisional scales both in space and velocity. Its nature depends on the physics of plasma fluctuations.…
Global gyrokinetic analysis of Wendelstein 7-X discharge: unveiling the importance of trapped-electron-mode and electron-temperature-gradient turbulence
本文首次对类 W7-X 仿星器放电进行含动理学电子、平衡径向电场及电磁碰撞效应的非线性径向全局回旋动理学模拟，揭示芯部湍流电子热通量主要由 TEM 和 ETG 驱动，并强调有限电子温度梯度的关键作用。
To help reveal the complete picture of linear kinetic drift modes, four independent numerical approaches, based on integral equation, Euler initial value simulation, Euler matrix eigenvalue solution and Lagrangian particle simulation, respectively, are used to solve the linear gyrokinetic electrostatic drift modes equation in Z-pinch with slab simplification and in tokamak with ballooning space coordinate. We identify that these approaches can yield the same solution with the difference smaller than 1\%, and the discrepancies mainly come from the numerical convergence, which is the first detai…
