We derive the fluctuation dynamics of a probe in weak coupling with a "living" medium, modeled as particles undergoing an active Ornstein-Uhlenbeck dynamics. Nondissipative corrections to the fluctuation-dissipation relation are written out explicitly in terms of time-correlations in the active medium. A first term changes the inertial mass of the probe, as a consequence of the persistence of the active medium. A second correction modifies the friction kernel. The resulting generalized Langevin equation benchmarks the motion induced on probes immersed in active versus passive media. The derivation uses nonequilibrium response theory.
Kinetic and hydrodynamic theories are widely employed for describing the collective behaviour of active matter systems. At the fluctuating level, these have been obtained from explicit coarse-graining procedures in the limit where each particle interacts weakly with many others, so that the total forces and torques exerted on each of them is of order unity at all times. Such limit is however not relevant for dilute systems that mostly interact via alignment; there, collisions are rare and make the self-propulsion direction to change abruptly. We derive a fluctuating kinetic theory, and the cor…
Max Planck Institute for Dynamics and Self-Organization（马克斯·普朗克动力学与自组织研究所）；DAMTP, Centre for Mathematical Sciences, University of Cambridge（剑桥大学数学科学中心 DAMTP）
The propulsion of active particles by self-diffusiophoresis is driven by asymmetric catalytic reactions on the particle surface that generate a mechanochemical coupling between the fluid velocity and the concentration fields of fuel and product in the surrounding solution. Because of thermal and molecular fluctuations in the solution, the motion of micrometric or submicrometric active particles is stochastic. Coupled Langevin equations describing the translation, rotation, and reaction of such active particles are deduced from fluctuating chemohydrodynamics and fluctuating boundary conditions …
We study stochastic dynamics of a point and extended inclusion within a one dimensional confined active viscoelastic gel. We show that the dynamics of a point inclusion can be described by a Langevin equation with a confining potential and multiplicative noise. Using a systematic adiabatic elimination over the fast variables, we arrive at an overdamped equation with a proper definition of the multiplicative noise. To highlight various features and to appeal to different biological contexts, we treat the inclusion in turn as a rigid extended element, an elastic element and a viscoelastic (Kelvi…
The active Brownian particle (ABP) model describes a swimmer, synthetic or living, whose direction of swimming is a Brownian motion. The swimming is due to a propulsion force, and the fluctuations are typically thermal in origin. We present a 2D model where the fluctuations arise from nonthermal noise in a propelling force acting at a single point, such as that due to a flagellum. We take the overdamped limit and find several modifications to the traditional ABP model. Since the fluctuating force causes a fluctuating torque, the diffusion tensor describing the process has a coupling between tr…
In this work, we study the dynamics of a single active Brownian particle, as well as the collective behavior of interacting active Brownian particles, in a fluctuating heterogeneous environment. We employ a variant of the diffusing diffusivity model where the equation of motion of the active particle involves a time-dependent motility and diffusivities. Within our model, those fluctuations are coupled to each other. Using analytical methods, we obtain the probability distribution function of particle displacement and its moments for a single particle. We then investigate the impact of the envi…
There have been increasing reports that the diffusion coefficient of macromolecules depends on time and fluctuates randomly. Here, a novel method to elucidate the fluctuating diffusivity from trajectory data is developed. The time-averaged mean square displacement (MSD), a common tool in single-particle-tracking (SPT) experiments, is generalized into a second order tensor, with which information on both magnitude fluctuations and orientational fluctuations of the diffusivity can be clearly detected. This new method is utilized to analyze the center-of-mass motion of four polymer models, the Ro…
We extend recent results on the exact hydrodynamics of a system of diffusive active particles displaying a motility-induced phase separation to account for typical fluctuations of the dynamical fields. By calculating correlation functions exactly in the homogeneous phase, we find that two macroscopic length scales develop in the system. The first is related to the diffusive length of the particles and the other to the collective behavior of the particles. The latter diverges as the critical point is approached. Our results show that the critical behavior of the model in one dimension belongs t…
Active (i.e., self-propelled or swimming) particles moving through an isotropic fluid exhibit conventional diffusive behavior. We report anomalous diffusion of an active particle moving in an anisotropic, nematic background. Whilst the translational motion parallel to the nematic director shows ballistic behavior, the long-time transverse motion is super-diffusive, with an anomalous scaling $\propto t \ln t$ of the mean squared displacement with time $t$. This behavior is predicted by an analytical theory that we present here, and is corroborated by numerical simulation of active particle diff…
The traction on the surface of a spherical active colloid in a thermally fluctuating Stokesian fluid contains passive, active, and Brownian contributions. Here we derive these three parts systematically, by "projecting out" the fluid using the boundary-domain integral representation of slow viscous flow. We find an exact relation between the statistics of the Brownian traction and the thermal forces in the fluid and derive, thereby, fluctuation-dissipation relations for every irreducible tensorial harmonic traction mode. The first two modes give the Brownian force and torque, from which we con…
We study the velocity distribution of unicellular swimming algae Euglena gracilis using optical microscopy and theory. To characterize a peculiar feature of the experimentally observed distribution at small velocities we use the concept of active fluctuations, which was recently proposed for the description of stochastically self-propelled particles [Romanczuk, P. and Schimansky-Geier, L., Phys. Rev. Lett. 106, 230601 (2011)]. In this concept, the fluctuating forces arise due to internal random performance of the propulsive motor. The fluctuating forces are directed in parallel to the heading …
The living cell expends energetic and material resources to reliably process information from its environment. To do so, it utilises unreliable molecular circuitry that is subject to thermal and other fluctuations. Here, we argue that active, physical processes can provide error correcting mechanisms for information processing. We analyse a model in which fluctuating receptor activation induces contractile stresses that recruit further receptors, dynamically controlling resource usage and accuracy. We show that this active scheme can outperform passive, static clusters (as formed, for instance…
We present mesoscale numerical simulations based on the coupling of the fluctuating lattice Boltzmann method (FLBM) for multicomponent systems with a wetted finite-size particle model. This newly coupled methodologies are used to study the motion of a spherical particle driven by a constant body force in a confined channel with a fixed square cross-section. The channel is filled with a mixture of two liquids under the effect of thermal fluctuations. After some validations steps in absence of fluctuations, we study the fluctuations in the particle's velocity at changing thermal energy, applied …
Active work measures how far the local self-forcing of active particles translates into real motion. Using Population Monte Carlo methods, we investigate large deviations in the active work for repulsive active Brownian disks. Minimizing the active work generically results in dynamical arrest; in contrast, despite the lack of aligning interactions, trajectories of high active work correspond to a collectively moving, aligned state. We use heuristic and analytic arguments to explain the origin of dynamical phase transitions separating the arrested, typical, and aligned regimes.
Single molecular motor kinesin harnesses thermal and non-thermal fluctuations to transport various cargoes along microtubules, converting chemical energy to directed movements. To describe the non-thermal fluctuations generated by the complex environment in living cells, we establish a bottom-up model to mimic the intracellular environment, by introducing an active bath consisting of active Ornstein-Uhlenbeck (OU) particles. Simulations of the model system show that kinesin and the probe attached to it are accelerated by such active bath. Further, we provide a theoretical insight into the simu…
Simplest extensions of single particle dynamics in momentum conserving active fluid - that of an active suspension of two colloidal particles or a single particle confined by a wall - exhibit strong departures from Boltzmann behavior, resulting in either a breakdown of an effective temperature description or a steady state with nonzero entropy production rate. This is a consequence of hydrodynamic interactions that introduce multiplicative noise in the stochastic description of the particle positions. This results in fluctuation induced interactions that depend on distance as a power law. We f…
Elastic active matter or active solid consists of self-propelled units embedded in an elastic matrix. Active solid resists deformation; the shape-preserving property and the intrinsic non-equilibrium nature make active solids a superior component for self-driven devices. Nonetheless, the mechanical properties and emergent behavior of active solids are poorly understood. Using a biofilm-based bacterial active solid, here we discovered self-sustained elastic waves with unique wave properties not seen in passive solids, such as power-law scaling of wave speed with activity. Under isotropic confin…
In molecular dynamics simulations and single molecule experiments, observables are usually measured along dynamic trajectories and then averaged over an ensemble ("bundle") of trajectories. Under stationary conditions, the time-evolution of such averages is described by the generalized Langevin equation. In contrast, if the dynamics is not stationary, it is not a priori clear which form the equation of motion for an averaged observable has. We employ the formalism of time-dependent projection operator techniques to derive the equation of motion for a non-equilibrium trajectory-averaged observa…
Heat-to-motion conversion for quantum active matter
Freie Universität Berlin（柏林自由大学）；The Abdus Salam International Center for Theoretical Physics（阿卜杜斯·萨拉姆国际理论物理中心）；Università di Napoli “Federico II”（那不勒斯费德里科二世大学）；Centro Atómico Bariloche（巴里洛切原子能中心）；Instituto de Nanociencia y Nanotecnología CONICET-CNEA（阿根廷国家科学和技术研究委员会-国家原子能委员会纳米科学与技术研究所）
Active particles which are self-propelled by converting energy into mechanical motion represent an expanding research realm in physics and chemistry. For micron-sized particles moving in a liquid ("microswimmers"), most of the basic features have been described by using the model of overdamped active Brownian motion. However, for macroscopic particles or microparticles moving in a gas, inertial effects become relevant such that the dynamics is underdamped. Therefore, recently, active particles with inertia have been described by extending the active Brownian motion model to active Langevin dyn…
Tracking experiments in dense biological tissues reveal a diversity of sources f or local energy injection at the cell scale. The effect of cell motility has been largely studied, but much less is known abo ut the effect of the observed volume fluctuations of individual cells. We devise a simple microscopic model of `actively-deforming' particles where local fluctuations of the particle size constitute a unique source of motion. We demonstrate that collective motion can emerge under the sole influence of such active volume fluctuations. We interpret the onset of diffusive motion as a nonequili…
Single-orientation Crystalline Domains of Active Brownian Particles Lead to Collective Motions
School of Physics and Electronic Information, Mianyang Teachers’ College（绵阳师范学院物理与电子信息学院）；Computer Network Information Center, Chinese Academy of Sciences（中国科学院计算机网络信息中心）；School of Physical Sciences, University of Chinese Academy of Sciences（中国科学院大学物理科学学院）
