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arXiv 2005.09592q-bio.PEcond-mat.softq-bio.TO
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肿瘤侵袭和克隆选择的最小模型

Minimal models of invasion and clonal selection in cancer

Chay Paterson

摘要:

在这篇论文中,我们开发了运动,生长和癌细胞的演变之间的关系的最小模型。我们利用简单的模拟群体的单个细胞在空间中,以研究如何在机械性能的变化,侵入性细胞及其周围环境可以影响细胞迁移的速度。我们还发现,大病灶的生长速度依赖于逃逸细胞的迁移速度弱,并具有更强和更复杂的依赖于模型中的其他随机过程的速率,即细胞过渡到能动的速率和细胞停止能动的反向速率。为了研究癌性病变集合的生长和演变速率如何取决于其几何形状和潜在的适应度景观,我们开发了一个分析框架,其中空间结构是粗粒度的,并且癌症被视为具有随机迁移事件的连续生长系统。这两种方法的结论是,整个合奏可以进行迁移驱动的指数增长,而不管依赖于时间的大小的个别病变,和增长率和迁移率之间的关系是由个别病变的几何约束。我们还发现,线性适应度景观导致集成的增长速度超过指数,我们可以确定在模型的几个重要情况下存在的驱动突变的预期数量。最后,我们研究了一项新的低剂量联合化疗有效性的临床研究数据。这使我们能够测试一些关于胰腺癌生长速度和现实中进化速度的重要假设。尽管如此,我们发现耐药突变体的频率太高,如果不诉诸于对多种药物的交叉耐药的新机制,就无法解释。

英文摘要:

In this thesis we develop minimal models of the relationship between motility, growth, and evolution of cancer cells. We utilise simple simulations of a population of individual cells in space to examine how changes in mechanical properties of invasive cells and their surroundings can affect the speed of cell migration. We also find that the growth rate of large lesions depends weakly on the migration speed of escaping cells, and has stronger and more complex dependencies on the rates of other stochastic processes in the model, namely the rate at which cells transition to being motile and the reverse rate at which cells cease to be motile. To examine how the rates of growth and evolution of an ensemble of cancerous lesions depends on their geometry and underlying fitness landscape, we develop an analytical framework in which the spatial structure is coarse grained and the cancer treated as a continuously growing system with stochastic migration events. Both approaches conclude that the whole ensemble can undergo migration-driven exponential growth regardless of the dependence of size on time of individual lesions, and that the relationship between growth rate and rate of migration is determined by the geometrical constraints of individual lesions. We also find that linear fitness landscapes result in faster-than-exponential growth of the ensemble, and we can determine the expected number of driver mutations present in several important cases of the model. Finally, we study data from a clinical study of the effectiveness of a new low-dose combined chemotherapy. This enables us to test some important hypotheses about the growth rate of pancreatic cancers and the speed with which evolution occurs in reality. Despite this, we find that the frequency of resistant mutants is far too high to be explained without resorting to novel mechanisms of cross-resistance to multiple drugs.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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