Distantly-Supervised Neural Relation Extraction with Side Information using BERT
Centro de Informática, Universidade Federal de Pernambuco（伯南布哥联邦大学信息中心）；Montreal Institute for Learning Algorithms, University of Montreal（蒙特利尔大学蒙特利尔学习算法研究所）；Department of Chemical and Biological Engineering, Northwestern University（西北大学化学与生物工程系）
Johny Moreira, Chaina Oliveira, David Macêdo, Cleber Zanchettin, Luciano Barbosa
备注：
2020 International Joint Conference on Neural Networks (IJCNN)
发表信息：
2020 International Joint Conference on Neural Networks (IJCNN)
Relation extraction (RE) consists in categorizing the relationship between entities in a sentence. A recent paradigm to develop relation extractors is Distant Supervision (DS), which allows the automatic creation of new datasets by taking an alignment between a text corpus and a Knowledge Base (KB). KBs can sometimes also provide additional information to the RE task. One of the methods that adopt this strategy is the RESIDE model, which proposes a distantly-supervised neural relation extraction using side information from KBs. Considering that this method outperformed state-of-the-art baselines, in this paper, we propose a related approach to RESIDE also using additional side information, but simplifying the sentence encoding with BERT embeddings. Through experiments, we show the effectiveness of the proposed method in Google Distant Supervision and Riedel datasets concerning the BGWA and RESIDE baseline methods. Although Area Under the Curve is decreased because of unbalanced datasets, P@N results have shown that the use of BERT as sentence encoding allows superior performance to baseline methods.
Aristotle University of Thessaloniki（塞萨洛尼基亚里士多德大学）
Distantly-supervised relation extraction (RE) is an effective method to scale RE to large corpora but suffers from noisy labels. Existing approaches try to alleviate noise through multi-instance learning and by providing additional information, but manage to recognize mainly the top frequent relations, neglecting those in the long-tail. We propose REDSandT (Relation Extraction with Distant Supervision and Transformers), a novel distantly-supervised transformer-based RE method, that manages to capture a wider set of relations through highly informative instance and label embeddings for RE, by e…
Shanghai Jiao Tong University（上海交通大学）；ByteDance AI Lab（字节跳动人工智能实验室）；Beijing Normal University (Zhuhai) & UIC（北京师范大学（珠海）与UIC）；American University of Sharjah（沙迦美国大学）
Distant supervision has been a widely used method for neural relation extraction for its convenience of automatically labeling datasets. However, existing works on distantly supervised relation extraction suffer from the low quality of test set, which leads to considerable biased performance evaluation. These biases not only result in unfair evaluations but also mislead the optimization of neural relation extraction. To mitigate this problem, we propose a novel evaluation method named active testing through utilizing both the noisy test set and a few manual annotations. Experiments on a widely…
Bi-encoder architectures for distantly-supervised relation extraction are designed to make use of the complementary information found in text and knowledge graphs (KG). However, current architectures suffer from two drawbacks. They either do not allow any sharing between the text encoder and the KG encoder at all, or, in case of models with KG-to-text attention, only share information in one direction. Here, we introduce cross-stitch bi-encoders, which allow full interaction between the text encoder and the KG encoder via a cross-stitch mechanism. The cross-stitch mechanism allows sharing and …
German Research Center for Artificial Intelligence (DFKI)（德国人工智能研究中心）
Fact triples are a common form of structured knowledge used within the biomedical domain. As the amount of unstructured scientific texts continues to grow, manual annotation of these texts for the task of relation extraction becomes increasingly expensive. Distant supervision offers a viable approach to combat this by quickly producing large amounts of labeled, but considerably noisy, data. We aim to reduce such noise by extending an entity-enriched relation classification BERT model to the problem of multiple instance learning, and defining a simple data encoding scheme that significantly red…
Tsinghua University（清华大学）；University of Wisconsin - Madison（威斯康星大学麦迪逊分校）；AHI Fintech Inc.（AHI金融科技公司）
Pattern-based labeling methods have achieved promising results in alleviating the inevitable labeling noises of distantly supervised neural relation extraction. However, these methods require significant expert labor to write relation-specific patterns, which makes them too sophisticated to generalize quickly.To ease the labor-intensive workload of pattern writing and enable the quick generalization to new relation types, we propose a neural pattern diagnosis framework, DIAG-NRE, that can automatically summarize and refine high-quality relational patterns from noise data with human experts in …
University of Chinese Academy of Sciences（中国科学院大学）
This paper investigates distantly supervised relation extraction in federated settings. Previous studies focus on distant supervision under the assumption of centralized training, which requires collecting texts from different platforms and storing them on one machine. However, centralized training is challenged by two issues, namely, data barriers and privacy protection, which make it almost impossible or cost-prohibitive to centralize data from multiple platforms. Therefore, it is worthy to investigate distant supervision in the federated learning paradigm, which decouples the model training…
We propose a framework to improve performance of distantly-supervised relation extraction, by jointly learning to solve two related tasks: concept-instance extraction and relation extraction. We combine this with a novel use of document structure: in some small, well-structured corpora, sections can be identified that correspond to relation arguments, and distantly-labeled examples from such sections tend to have good precision. Using these as seeds we extract additional relation examples by applying label propagation on a graph composed of noisy examples extracted from a large unstructured te…
Indian Institute of Science（印度科学学院）；Birla Institute of Technology and Science, Pilani（比尔拉理工学院皮拉尼校区）
Distantly-supervised Relation Extraction (RE) methods train an extractor by automatically aligning relation instances in a Knowledge Base (KB) with unstructured text. In addition to relation instances, KBs often contain other relevant side information, such as aliases of relations (e.g., founded and co-founded are aliases for the relation founderOfCompany). RE models usually ignore such readily available side information. In this paper, we propose RESIDE, a distantly-supervised neural relation extraction method which utilizes additional side information from KBs for improved relation extractio…
Automated entity relation extraction (RE) from literature provides an important source for constructing biomedical database, which is more efficient and extensible than manual curation. However, existing RE models usually ignore the information contained in sentence structures and target entities. In this paper, we propose BERE, a deep learning based model which uses Gumbel Tree-GRU to learn sentence structures and joint embedding to incorporate entity information. It also employs word-level attention for improved relation extraction and sentence-level attention to suit the distantly supervise…
Distantly supervised models are very popular for relation extraction since we can obtain a large amount of training data using the distant supervision method without human annotation. In distant supervision, a sentence is considered as a source of a tuple if the sentence contains both entities of the tuple. However, this condition is too permissive and does not guarantee the presence of relevant relation-specific information in the sentence. As such, distantly supervised training data contains much noise which adversely affects the performance of the models. In this paper, we propose a self-en…
Indian Institute of Science（印度科学研究所）；University of British Columbia（英属哥伦比亚大学）
Relation extraction is the problem of classifying the relationship between two entities in a given sentence. Distant Supervision (DS) is a popular technique for developing relation extractors starting with limited supervision. We note that most of the sentences in the distant supervision relation extraction setting are very long and may benefit from word attention for better sentence representation. Our contributions in this paper are threefold. Firstly, we propose two novel word attention models for distantly- supervised relation extraction: (1) a Bi-directional Gated Recurrent Unit (Bi-GRU) …
Toyota Technological Institute（丰田工业大学）；Artificial Intelligence Research Center, National Institute of Advanced Industrial Science and Technology（日本产业技术综合研究所人工智能研究中心）
We propose a multi-task, probabilistic approach to facilitate distantly supervised relation extraction by bringing closer the representations of sentences that contain the same Knowledge Base pairs. To achieve this, we bias the latent space of sentences via a Variational Autoencoder (VAE) that is trained jointly with a relation classifier. The latent code guides the pair representations and influences sentence reconstruction. Experimental results on two datasets created via distant supervision indicate that multi-task learning results in performance benefits. Additional exploration of employin…
In recent years, distantly-supervised relation extraction has achieved a certain success by using deep neural networks. Distant Supervision (DS) can automatically generate large-scale annotated data by aligning entity pairs from Knowledge Bases (KB) to sentences. However, these DS-generated datasets inevitably have wrong labels that result in incorrect evaluation scores during testing, which may mislead the researchers. To solve this problem, we build a new dataset NYTH, where we use the DS-generated data as training data and hire annotators to label test data. Compared with the previous datas…
East China Normal University（华东师范大学）；Alibaba Group（阿里巴巴集团）；Shanghai Research Institute for Intelligent Autonomous Systems（上海智能自主系统研究院）
Distant supervision assumes that any sentence containing the same entity pairs reflects identical relationships. Previous works of distantly supervised relation extraction (DSRE) task generally focus on sentence-level or bag-level de-noising techniques independently, neglecting the explicit interaction with cross levels. In this paper, we propose a hierarchical contrastive learning Framework for Distantly Supervised relation extraction (HiCLRE) to reduce noisy sentences, which integrate the global structural information and local fine-grained interaction. Specifically, we propose a three-level…
Neural models for distantly supervised relation extraction (DS-RE) encode each sentence in an entity-pair bag separately. These are then aggregated for bag-level relation prediction. Since, at encoding time, these approaches do not allow information to flow from other sentences in the bag, we believe that they do not utilize the available bag data to the fullest. In response, we explore a simple baseline approach (PARE) in which all sentences of a bag are concatenated into a passage of sentences, and encoded jointly using BERT. The contextual embeddings of tokens are aggregated using attention…
Distantly supervised (DS) relation extraction (RE) has attracted much attention in the past few years as it can utilize large-scale auto-labeled data. However, its evaluation has long been a problem: previous works either took costly and inconsistent methods to manually examine a small sample of model predictions, or directly test models on auto-labeled data -- which, by our check, produce as much as 53% wrong labels at the entity pair level in the popular NYT10 dataset. This problem has not only led to inaccurate evaluation, but also made it hard to understand where we are and what's left to …
Distantly supervision automatically generates plenty of training samples for relation extraction. However, it also incurs two major problems: noisy labels and imbalanced training data. Previous works focus more on reducing wrongly labeled relations (false positives) while few explore the missing relations that are caused by incompleteness of knowledge base (false negatives). Furthermore, the quantity of negative labels overwhelmingly surpasses the positive ones in previous problem formulations. In this paper, we first provide a thorough analysis of the above challenges caused by negative data.…
Harbin Institute of Technology（哈尔滨工业大学）；University of Rochester（罗切斯特大学）；Beijing University of Civil Engineering and Architecture（北京建筑大学）
Label noise and long-tailed distributions are two major challenges in distantly supervised relation extraction. Recent studies have shown great progress on denoising, but paid little attention to the problem of long-tailed relations. In this paper, we introduce a constraint graph to model the dependencies between relation labels. On top of that, we further propose a novel constraint graph-based relation extraction framework(CGRE) to handle the two challenges simultaneously. CGRE employs graph convolution networks to propagate information from data-rich relation nodes to data-poor relation node…
Medical entity extraction (EE) is a standard procedure used as a first stage in medical texts processing. Usually Medical EE is a two-step process: named entity recognition (NER) and named entity normalization (NEN). We propose a novel method of doing medical EE from electronic health records (EHR) as a single-step multi-label classification task by fine-tuning a transformer model pretrained on a large EHR dataset. Our model is trained end-to-end in an distantly supervised manner using targets automatically extracted from medical knowledge base. We show that our model learns to generalize for …
In this paper, we propose a fully automated system to extend knowledge graphs using external information from web-scale corpora. The designed system leverages a deep learning based technology for relation extraction that can be trained by a distantly supervised approach. In addition to that, the system uses a deep learning approach for knowledge base completion by utilizing the global structure information of the induced KG to further refine the confidence of the newly discovered relations. The designed system does not require any effort for adaptation to new languages and domains as it does n…
Iran University of Science and Technology（伊朗科技大学）；Islamic Azad University（伊斯兰阿扎德大学）
Multiple instance learning (MIL) has become the standard learning paradigm for distantly supervised relation extraction (DSRE). However, due to relation extraction being performed at bag level, MIL has significant hardware requirements for training when coupled with large sentence encoders such as deep transformer neural networks. In this paper, we propose a novel sampling method for DSRE that relaxes these hardware requirements. In the proposed method, we limit the number of sentences in a batch by randomly sampling sentences from the bags in the batch. However, this comes at the cost of losi…
College of Information and Computer Sciences（信息与计算机科学学院）；University of Massachusetts Amherst（马萨诸塞大学阿默斯特分校）
We propose a new, socially-impactful task for natural language processing: from a news corpus, extract names of persons who have been killed by police. We present a newly collected police fatality corpus, which we release publicly, and present a model to solve this problem that uses EM-based distant supervision with logistic regression and convolutional neural network classifiers. Our model outperforms two off-the-shelf event extractor systems, and it can suggest candidate victim names in some cases faster than one of the major manually-collected police fatality databases.
Distant supervised relation extraction has been successfully applied to large corpus with thousands of relations. However, the inevitable wrong labeling problem by distant supervision will hurt the performance of relation extraction. In this paper, we propose a method with neural noise converter to alleviate the impact of noisy data, and a conditional optimal selector to make proper prediction. Our noise converter learns the structured transition matrix on logit level and captures the property of distant supervised relation extraction dataset. The conditional optimal selector on the other hand…
German Research Center for Artificial Intelligence (DFKI)（德国人工智能研究中心）
Distantly supervised relation extraction is widely used to extract relational facts from text, but suffers from noisy labels. Current relation extraction methods try to alleviate the noise by multi-instance learning and by providing supporting linguistic and contextual information to more efficiently guide the relation classification. While achieving state-of-the-art results, we observed these models to be biased towards recognizing a limited set of relations with high precision, while ignoring those in the long tail. To address this gap, we utilize a pre-trained language model, the OpenAI Gen…
University of Southern California（南加州大学）；University of Illinois, Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）；Purdue University（普渡大学）
In recent years there is a surge of interest in applying distant supervision (DS) to automatically generate training data for relation extraction (RE). In this paper, we study the problem what limits the performance of DS-trained neural models, conduct thorough analyses, and identify a factor that can influence the performance greatly, shifted label distribution. Specifically, we found this problem commonly exists in real-world DS datasets, and without special handing, typical DS-RE models cannot automatically adapt to this shift, thus achieving deteriorated performance. To further validate ou…
ICST, Peking University, China（北京大学信息科学技术学院（ICST））；School of Computing and Communications, Lancaster University, UK（兰卡斯特大学计算与通信学院）；IBM China Research Lab, China（IBM中国研究实验室）
Distant supervision significantly reduces human efforts in building training data for many classification tasks. While promising, this technique often introduces noise to the generated training data, which can severely affect the model performance. In this paper, we take a deep look at the application of distant supervision in relation extraction. We show that the dynamic transition matrix can effectively characterize the noise in the training data built by distant supervision. The transition matrix can be effectively trained using a novel curriculum learning based method without any direct su…
University of Illinois Urbana Champaign（伊利诺伊大学厄巴纳-香槟分校）；Tsinghua University（清华大学）；Tencent（腾讯）；Zhejiang University（浙江大学）
Distant supervision (DS) is a strong way to expand the datasets for enhancing relation extraction (RE) models but often suffers from high label noise. Current works based on attention, reinforcement learning, or GAN are black-box models so they neither provide meaningful interpretation of sample selection in DS nor stability on different domains. On the contrary, this work proposes a novel model-agnostic instance sampling method for DS by influence function (IF), namely REIF. Our method identifies favorable/unfavorable instances in the bag based on IF, then does dynamic instance sampling. We d…
State Key Laboratory for Novel Software Technology, Nanjing University（南京大学计算机软件新技术国家重点实验室）；National Institute of Healthcare Data Science, Nanjing University（南京大学健康医疗大数据国家研究院）
Distantly supervised relation extraction (RE) automatically aligns unstructured text with relation instances in a knowledge base (KB). Due to the incompleteness of current KBs, sentences implying certain relations may be annotated as N/A instances, which causes the so-called false negative (FN) problem. Current RE methods usually overlook this problem, inducing improper biases in both training and testing procedures. To address this issue, we propose a two-stage approach. First, it finds out possible FN samples by heuristically leveraging the memory mechanism of deep neural networks. Then, it …
University of Virginia（弗吉尼亚大学）；Tencent AI Lab（腾讯AI实验室）；Fudan University（复旦大学）
Distant supervision makes it possible to automatically label bags of sentences for relation extraction by leveraging knowledge bases, but suffers from the sparse and noisy bag issues. Additional information sources are urgently needed to supplement the training data and overcome these issues. In this paper, we introduce two widely-existing sources in knowledge bases, namely entity descriptions, and multi-grained entity types to enrich the distantly supervised data. We see information sources as multiple views and fusing them to construct an intact space with sufficient information. An end-to-e…
Zhejiang University（浙江大学）；Alibaba-Zhejiang University Joint Research Institute of Frontier Technologies（阿里巴巴-浙江大学前沿技术联合研究院）；State Key Laboratory of Cognitive Intelligence（认知智能国家重点实验室）
The journey of reducing noise from distant supervision (DS) generated training data has been started since the DS was first introduced into the relation extraction (RE) task. For the past decade, researchers apply the multi-instance learning (MIL) framework to find the most reliable feature from a bag of sentences. Although the pattern of MIL bags can greatly reduce DS noise, it fails to represent many other useful sentence features in the datasets. In many cases, these sentence features can only be acquired by extra sentence-level human annotation with heavy costs. Therefore, the performance …
Zhejiang University（浙江大学）；University of Illinois at Urbana Champaign（伊利诺伊大学厄巴纳-香槟分校）；Hikvision Research Institute（海康威视研究院）；University of Southern California（南加利福尼亚大学）
Distant supervision leverages knowledge bases to automatically label instances, thus allowing us to train relation extractor without human annotations. However, the generated training data typically contain massive noise, and may result in poor performances with the vanilla supervised learning. In this paper, we propose to conduct multi-instance learning with a novel Cross-relation Cross-bag Selective Attention (C$^2$SA), which leads to noise-robust training for distant supervised relation extractor. Specifically, we employ the sentence-level selective attention to reduce the effect of noisy o…
Zhejiang University（浙江大学）；University of Illinois at Urbana Champaign（伊利诺伊大学厄巴纳-香槟分校）；iFLYTEK Research（讯飞研究院）
With recent advances in distantly supervised (DS) relation extraction (RE), considerable attention is attracted to leverage multi-instance learning (MIL) to distill high-quality supervision from the noisy DS. Here, we go beyond label noise and identify the key bottleneck of DS-MIL to be its low data utilization: as high-quality supervision being refined by MIL, MIL abandons a large amount of training instances, which leads to a low data utilization and hinders model training from having abundant supervision. In this paper, we propose collaborative adversarial training to improve the data utili…
ADAPT Centre, School of Computing, Dublin City University（都柏林城市大学计算学院ADAPT中心）；Accenture Labs Dublin（埃森哲都柏林实验室）
Attention mechanisms are often used in deep neural networks for distantly supervised relation extraction (DS-RE) to distinguish valid from noisy instances. However, traditional 1-D vector attention models are insufficient for the learning of different contexts in the selection of valid instances to predict the relationship for an entity pair. To alleviate this issue, we propose a novel multi-level structured (2-D matrix) self-attention mechanism for DS-RE in a multi-instance learning (MIL) framework using bidirectional recurrent neural networks. In the proposed method, a structured word-level …
University of Technology Sydney（悉尼科技大学）；University of Washington（华盛顿大学）；University of New South Wales（新南威尔士大学）
Distantly supervised relation extraction intrinsically suffers from noisy labels due to the strong assumption of distant supervision. Most prior works adopt a selective attention mechanism over sentences in a bag to denoise from wrongly labeled data, which however could be incompetent when there is only one sentence in a bag. In this paper, we propose a brand-new light-weight neural framework to address the distantly supervised relation extraction problem and alleviate the defects in previous selective attention framework. Specifically, in the proposed framework, 1) we use an entity-aware word…
We study the open-domain named entity recognition (NER) problem under distant supervision. The distant supervision, though does not require large amounts of manual annotations, yields highly incomplete and noisy distant labels via external knowledge bases. To address this challenge, we propose a new computational framework -- BOND, which leverages the power of pre-trained language models (e.g., BERT and RoBERTa) to improve the prediction performance of NER models. Specifically, we propose a two-stage training algorithm: In the first stage, we adapt the pre-trained language model to the NER tas…
University of Chinese Academy of Sciences（中国科学院大学）；Institute of Software, Chinese Academy of Sciences（中国科学院软件研究所）
Distant supervision (DS) is a promising approach for relation extraction but often suffers from the noisy label problem. Traditional DS methods usually represent an entity pair as a bag of sentences and denoise labels using multi-instance learning techniques. The bag-based paradigm, however, fails to leverage the inter-sentence-level and the entity-level evidence for relation extraction, and their denoising algorithms are often specialized and complicated. In this paper, we propose a new DS paradigm--document-based distant supervision, which models relation extraction as a document-based machi…
Jilin University（吉林大学）；University of Washington（华盛顿大学）
Wrong-labeling problem and long-tail relations severely affect the performance of distantly supervised relation extraction task. Many studies mitigate the effect of wrong-labeling through selective attention mechanism and handle long-tail relations by introducing relation hierarchies to share knowledge. However, almost all existing studies ignore the fact that, in a sentence, the appearance order of two entities contributes to the understanding of its semantics. Furthermore, they only utilize each relation level of relation hierarchies separately, but do not exploit the heuristic effect betwee…
German Research Center for Artificial Intelligence（德国人工智能研究中心）；Saarland University（萨尔大学）；Yale Center for Medical Informatics（耶鲁医学信息学中心）；UCL Centre for Artificial Intelligence（伦敦大学学院人工智能中心）
Relation extraction in the biomedical domain is challenging due to the lack of labeled data and high annotation costs, needing domain experts. Distant supervision is commonly used to tackle the scarcity of annotated data by automatically pairing knowledge graph relationships with raw texts. Such a pipeline is prone to noise and has added challenges to scale for covering a large number of biomedical concepts. We investigated existing broad-coverage distantly supervised biomedical relation extraction benchmarks and found a significant overlap between training and test relationships ranging from …
Sentence Bag Graph Formulation for Biomedical Distant Supervision Relation Extraction
School of Computer Science and Technology, Harbin Institute of Technology（哈尔滨工业大学计算机科学与技术学院）；University of Rochester（罗切斯特大学）；School of Electrical and Information Engineering, Beijing University of Civil Engineering and Architecture（北京建筑大学电气与信息工程学院）；Beijing Key Laboratory of Intelligent Processing for Building Big Data, Beijing University of Civil Engineering and Architecture（北京建筑大学北京市建筑大数据智能处理重点实验室）
IIT Kharagpur（印度理工学院卡拉格普尔分校）；Singapore University of Technology and Design（新加坡科技设计大学）
Recently, with the advances made in continuous representation of words (word embeddings) and deep neural architectures, many research works are published in the area of relation extraction and it is very difficult to keep track of so many papers. To help future research, we present a comprehensive review of the recently published research works in relation extraction. We mostly focus on relation extraction using deep neural networks which have achieved state-of-the-art performance on publicly available datasets. In this survey, we cover sentence-level relation extraction to document-level rela…
National Taiwan University（国立台湾大学）；University of California, Santa Barbara（加利福尼亚大学圣塔芭芭拉分校）
Deep residual learning (ResNet) is a new method for training very deep neural networks using identity map-ping for shortcut connections. ResNet has won the ImageNet ILSVRC 2015 classification task, and achieved state-of-the-art performances in many computer vision tasks. However, the effect of residual learning on noisy natural language processing tasks is still not well understood. In this paper, we design a novel convolutional neural network (CNN) with residual learning, and investigate its impacts on the task of distantly supervised noisy relation extraction. In contradictory to popular bel…
National Taiwan University（国立台湾大学）；National Cheng Kung University（国立成功大学）
While relation extraction is an essential task in knowledge acquisition and representation, and new-generated relations are common in the real world, less effort is made to predict unseen relations that cannot be observed at the training stage. In this paper, we formulate the zero-shot relation extraction problem by incorporating the text description of seen and unseen relations. We propose a novel multi-task learning model, zero-shot BERT (ZS-BERT), to directly predict unseen relations without hand-crafted attribute labeling and multiple pairwise classifications. Given training instances cons…
Clinical notes contain an abundance of important but not-readily accessible information about patients. Systems to automatically extract this information rely on large amounts of training data for which their exists limited resources to create. Furthermore, they are developed dis-jointly; meaning that no information can be shared amongst task-specific systems. This bottle-neck unnecessarily complicates practical application, reduces the performance capabilities of each individual solution and associates the engineering debt of managing multiple information extraction systems. We address these …
Techniques for automatically extracting important content elements from business documents such as contracts, statements, and filings have the potential to make business operations more efficient. This problem can be formulated as a sequence labeling task, and we demonstrate the adaption of BERT to two types of business documents: regulatory filings and property lease agreements. There are aspects of this problem that make it easier than "standard" information extraction tasks and other aspects that make it more difficult, but on balance we find that modest amounts of annotated data (less than…
Tsinghua University（清华大学）；The University of Edinburgh（爱丁堡大学）；Alibaba Group（阿里巴巴集团）；Sun Yat-sen University（中山大学）
Recognizing relations between entities is a pivotal task of relational learning. Learning relation representations from distantly-labeled datasets is difficult because of the abundant label noise and complicated expressions in human language. This paper aims to learn predictive, interpretable, and robust relation representations from distantly-labeled data that are effective in different settings, including supervised, distantly supervised, and few-shot learning. Instead of solely relying on the supervision from noisy labels, we propose to learn prototypes for each relation from contextual inf…
University of Chinese Academy of Sciences（中国科学院大学）
With the development and business adoption of knowledge graph, there is an increasing demand for extracting entities and relations of knowledge graphs from unstructured domain documents. This makes the automatic knowledge extraction for domain text quite meaningful. This paper proposes a knowledge extraction method based on BERT, which is used to extract knowledge points from unstructured specific domain texts (such as insurance clauses in the insurance industry) automatically to save manpower of knowledge graph construction. Different from the commonly used methods which are based on rules, t…
Beihang University（北京航空航天大学）；China Defense Science and Technology Information Center（中国国防科技信息中心）
Connections between relations in relation extraction, which we call class ties, are common. In distantly supervised scenario, one entity tuple may have multiple relation facts. Exploiting class ties between relations of one entity tuple will be promising for distantly supervised relation extraction. However, previous models are not effective or ignore to model this property. In this work, to effectively leverage class ties, we propose to make joint relation extraction with a unified model that integrates convolutional neural network (CNN) with a general pairwise ranking framework, in which thr…
A principal barrier to training temporal relation extraction models in new domains is the lack of varied, high quality examples and the challenge of collecting more. We present a method of automatically collecting distantly-supervised examples of temporal relations. We scrape and automatically label event pairs where the temporal relations are made explicit in text, then mask out those explicit cues, forcing a model trained on this data to learn other signals. We demonstrate that a pre-trained Transformer model is able to transfer from the weakly labeled examples to human-annotated benchmarks …
In this paper, we propose Multi$^2$OIE, which performs open information extraction (open IE) by combining BERT with multi-head attention. Our model is a sequence-labeling system with an efficient and effective argument extraction method. We use a query, key, and value setting inspired by the Multimodal Transformer to replace the previously used bidirectional long short-term memory architecture with multi-head attention. Multi$^2$OIE outperforms existing sequence-labeling systems with high computational efficiency on two benchmark evaluation datasets, Re-OIE2016 and CaRB. Additionally, we apply…
Data Science and AI, Novartis（诺华数据科学与人工智能部门）；Global Drug Development, Novartis Pharma AG（诺华制药全球药物开发部）
Natural language processing (NLP) of clinical trial documents can be useful in new trial design. Here we identify entity types relevant to clinical trial design and propose a framework called CT-BERT for information extraction from clinical trial text. We trained named entity recognition (NER) models to extract eligibility criteria entities by fine-tuning a set of pre-trained BERT models. We then compared the performance of CT-BERT with recent baseline methods including attention-based BiLSTM and Criteria2Query. The results demonstrate the superiority of CT-BERT in clinical trial NLP.
Relation extraction (RE) has been extensively studied due to its importance in real-world applications such as knowledge base construction and question answering. Most of the existing works train the models on either distantly supervised data or human-annotated data. To take advantage of the high accuracy of human annotation and the cheap cost of distant supervision, we propose the dual supervision framework which effectively utilizes both types of data. However, simply combining the two types of data to train a RE model may decrease the prediction accuracy since distant supervision has labeli…
Xian Jiaotong University（西安交通大学）；The University of Manchester（曼彻斯特大学）；East China University of Science and Technology（华东理工大学）；Zhejiang University（浙江大学）
Automatic or semi-automatic conversion of protocols specifying steps in performing a lab procedure into machine-readable format benefits biological research a lot. These noisy, dense, and domain-specific lab protocols processing draws more and more interests with the development of deep learning. This paper presents our teamwork on WNUT 2020 shared task-1: wet lab entity extract, that we conducted studies in several models, including a BiLSTM CRF model and a Bert case model which can be used to complete wet lab entity extraction. And we mainly discussed the performance differences of \textbf{B…
In this paper, we present an empirical study of using pre-trained BERT models for the relation extraction task at the VLSP 2020 Evaluation Campaign. We applied two state-of-the-art BERT-based models: R-BERT and BERT model with entity starts. For each model, we compared two pre-trained BERT models: FPTAI/vibert and NlpHUST/vibert4news. We found that NlpHUST/vibert4news model significantly outperforms FPTAI/vibert for the Vietnamese relation extraction task. Finally, we proposed an ensemble model that combines R-BERT and BERT with entity starts. Our proposed ensemble model slightly improved agai…
Zhejiang University（浙江大学）；AZFT Joint Lab for Knowledge Engine（AZFT知识引擎联合实验室）；Hangzhou Innovation Center, Zhejiang University（浙江大学杭州国际科创中心）
Fine-tuning pre-trained models have achieved impressive performance on standard natural language processing benchmarks. However, the resultant model generalizability remains poorly understood. We do not know, for example, how excellent performance can lead to the perfection of generalization models. In this study, we analyze a fine-tuned BERT model from different perspectives using relation extraction. We also characterize the differences in generalization techniques according to our proposed improvements. From empirical experimentation, we find that BERT suffers a bottleneck in terms of robus…
Loria, CNRS, Inria, Université de Lorraine（洛里亚研究所、法国国家科学研究中心、法国国家信息与自动化研究所、洛林大学）
Relation extraction (RE) consists in identifying and structuring automatically relations of interest from texts. Recently, BERT improved the top performances for several NLP tasks, including RE. However, the best way to use BERT, within a machine learning architecture, and within a transfer learning strategy is still an open question since it is highly dependent on each specific task and domain. Here, we explore various BERT-based architectures and transfer learning strategies (i.e., frozen or fine-tuned) for the task of biomedical RE on two corpora. Among tested architectures and strategies, …
University of Washington（华盛顿大学）；Amazon（亚马逊）；Allen Institute for AI（艾伦人工智能研究所）
In many documents, such as semi-structured webpages, textual semantics are augmented with additional information conveyed using visual elements including layout, font size, and color. Prior work on information extraction from semi-structured websites has required learning an extraction model specific to a given template via either manually labeled or distantly supervised data from that template. In this work, we propose a solution for "zero-shot" open-domain relation extraction from webpages with a previously unseen template, including from websites with little overlap with existing sources of…
Université Paris-Saclay, INRAE, MaIAGE（巴黎-萨克雷大学，法国国家农业食品与环境研究院，应用数学与计算机科学、基因组学与环境研究单位）；Université Paris-Saclay, CNRS, Laboratoire interdisciplinaire des sciences du numérique（巴黎-萨克雷大学，法国国家科学研究中心，数字科学跨学科实验室）
Recently many studies have been conducted on the topic of relation extraction. The DrugProt track at BioCreative VII provides a manually-annotated corpus for the purpose of the development and evaluation of relation extraction systems, in which interactions between chemicals and genes are studied. We describe the ensemble system that we used for our submission, which combines predictions of fine-tuned bioBERT, sciBERT and const-bioBERT models by majority voting. We specifically tested the contribution of syntactic information to relation extraction with BERT. We observed that adding constituen…
