We study approximation algorithms for the following three string measures that are widely used in practice: edit distance (ED), longest common subsequence (LCS), and longest increasing sequence (LIS). All three problems can be solved exactly by standard algorithms that run in polynomial time with roughly $Θ(n)$ space, where $n$ is the input length, and our goal is to design deterministic approximation algorithms that run in polynomial time with significantly smaller space.
Towards this, we design several algorithms that achieve $1+ε$ or $1-ε$ approximation for all three problems, where $ε>0$ can be any constant and even slightly sub constant. Our algorithms are flexible and can be adjusted to achieve the following two regimes of parameters: 1) space $n^δ$ for any constant $δ>0$ with running time essentially the same as or slightly more than the standard algorithms; and 2) space $\mathsf{polylog}(n)$ with (a larger) polynomial running time, which puts the approximation versions of the three problems in Steve's class (\textbf{SC}). Our algorithms significantly improve previous results in terms of space complexity, where all known results need to use space at least $Ω(\sqrt{n})$. Some of our algorithms can also be adapted to work in the asymmetric streaming model [SS13], and output the corresponding sequence. Furthermore, our results can be used to improve a recent result by Farhadi et. al. [FHRS20] about approximating ED in the asymmetric streaming model, reducing the running time from being exponential in [FHRS20] to a polynomial.
Our algorithms are based on the idea of using recursion as in Savitch's theorem [Sav70], and a careful adaption of previous techniques to make the recursion work. Along the way we also give a new logspace reduction from longest common subsequence to longest increasing sequence, which may be of independent interest.
Given a string $S$ of length $n$, the classic string indexing problem is to preprocess $S$ into a compact data structure that supports efficient subsequent pattern queries. In the \emph{deterministic} variant the goal is to solve the string indexing problem without any randomization (at preprocessing time or query time). In the \emph{packed} variant the strings are stored with several character in a single word, giving us the opportunity to read multiple characters simultaneously. Our main result is a new string index in the deterministic \emph{and} packed setting. Given a packed string $S$ of…
Data compression plays a crucial part in the cloud based systems of today. One the fundaments of compression is quasi-periodicity, for which there are several models. We build upon the most popular quasi-periodicity model for strings, i.e., covers, generalizing it to trees. We introduce a new type of cover automata, which we call \textbf{D}eterministic \textbf{T}ree \textbf{A}utomata. Then, we formulate a cover problem on these DTA and study its complexity, in both sequential and parallel settings. We obtain bounds for the Cover Minimization Problem. Along the way, we uncover an interesting ap…
Countless variants of the Lempel-Ziv compression are widely used in many real-life applications. This paper is concerned with a natural modification of the classical pattern matching problem inspired by the popularity of such compression methods: given an uncompressed pattern s[1..m] and a Lempel-Ziv representation of a string t[1..N], does s occur in t? Farach and Thorup gave a randomized O(nlog^2(N/n)+m) time solution for this problem, where n is the size of the compressed representation of t. We improve their result by developing a faster and fully deterministic O(nlog(N/n)+m) time algorith…
We study the problem of maximizing a monotone submodular function subject to a matroid constraint and present a deterministic algorithm that achieves (1/2 + ε)-approximation for the problem. This algorithm is the first deterministic algorithm known to improve over the 1/2-approximation ratio of the classical greedy algorithm proved by Nemhauser, Wolsely and Fisher in 1978.
We show that the compressed suffix array and the compressed suffix tree of a string $T$ can be built in $O(n)$ deterministic time using $O(n\logσ)$ bits of space, where $n$ is the string length and $σ$ is the alphabet size. Previously described deterministic algorithms either run in time that depends on the alphabet size or need $ω(n\log σ)$ bits of working space. Our result has immediate applications to other problems, such as yielding the first linear-time LZ77 and LZ78 parsing algorithms that use $O(n \logσ)$ bits.
Synchronization strings are recently introduced by Haeupler and Shahrasbi [HS17a] in the study of codes for correcting insertion and deletion errors (insdel codes). A synchronization string is an encoding of the indices of the symbols in a string, and together with an appropriate decoding algorithm it can transform insertion and deletion errors into standard symbol erasures and corruptions. This reduces the problem of constructing insdel codes to the problem of constructing standard error correcting codes, which is much better understood. Besides this, synchronization strings are also useful i…
The problem of maximizing a non-negative submodular function was introduced by Feige, Mirrokni, and Vondrak [FOCS'07] who provided a deterministic local-search based algorithm that guarantees an approximation ratio of $\frac 1 3$, as well as a randomized $\frac 2 5$-approximation algorithm. An extensive line of research followed and various algorithms with improving approximation ratios were developed, all of them are randomized. Finally, Buchbinder et al. [FOCS'12] presented a randomized $\frac 1 2$-approximation algorithm, which is the best possible. This paper gives the first deterministic …
Deterministic Approximation of the Total Variation Distance Between Spin Systems
School of Computer Science and Technology, University of Science and Technology of China（中国科学技术大学计算机科学与技术学院）；School of Computing and Data Science, The University of Hong Kong（香港大学计算与数据科学学院）
Suppose that we have two parties that possess each a binary string. Suppose that the length of the first string (document) is $n$ and that the two strings (documents) have edit distance (minimal number of deletes, inserts and substitutions needed to transform one string into the other) at most $k$. The problem we want to solve is to devise an efficient protocol in which the first party sends a single message that allows the second party to guess the first party's string. In this paper we show an efficient deterministic protocol for this problem. The protocol runs in time $O(n\cdot \mathtt{poly…
Given n elements with nonnegative integer weights w1,..., wn and an integer capacity C, we consider the counting version of the classic knapsack problem: find the number of distinct subsets whose weights add up to at most the given capacity. We give a deterministic algorithm that estimates the number of solutions to within relative error 1+-eps in time polynomial in n and 1/eps (fully polynomial approximation scheme). More precisely, our algorithm takes time O(n^3 (1/eps) log (n/eps)). Our algorithm is based on dynamic programming. Previously, randomized polynomial time approximation schemes w…
We show that the max entropy algorithm can be derandomized (with respect to a particular objective function) to give a deterministic $3/2-ε$ approximation algorithm for metric TSP for some $ε> 10^{-36}$. To obtain our result, we apply the method of conditional expectation to an objective function constructed in prior work which was used to certify that the expected cost of the algorithm is at most $3/2-ε$ times the cost of an optimal solution to the subtour elimination LP. The proof in this work involves showing that the expected value of this objective function can be computed in polynomial t…
It is widely assumed that $O(m+\lg σ)$ is the best one can do for finding a pattern of length $m$ in a compacted trie storing strings over an alphabet of size $σ$, if one insists on linear-size data structures and deterministic worst-case running times [Cole et al., ICALP'06]. In this article, we first show that a rather straightforward combination of well-known ideas yields $O(m+\lg\lg σ)$ deterministic worst-case searching time for static tries. Then we move on to dynamic tries, where we achieve a worst-case bound of $O(m+\frac{\lg^{2}\lgσ}{\lg\lg\lgσ})$ per query or update, which should aga…
We present two deterministic dynamic algorithms for the maximum matching problem. (1) An algorithm that maintains a $(2+ε)$-approximate maximum matching in general graphs with $O(\text{poly}(\log n, 1/ε))$ update time. (2) An algorithm that maintains an $α_K$ approximation of the {\em value} of the maximum matching with $O(n^{2/K})$ update time in bipartite graphs, for every sufficiently large constant positive integer $K$. Here, $1\leq α_K < 2$ is a constant determined by the value of $K$. Result (1) is the first deterministic algorithm that can maintain an $o(\log n)$-approximate maximum mat…
In the Closest String problem one is given a family $\mathcal S$ of equal-length strings over some fixed alphabet, and the task is to find a string $y$ that minimizes the maximum Hamming distance between $y$ and a string from $\mathcal S$. While polynomial-time approximation schemes (PTASes) for this problem are known for a long time [Li et al., J. ACM'02], no efficient polynomial-time approximation scheme (EPTAS) has been proposed so far. In this paper, we prove that the existence of an EPTAS for Closest String is in fact unlikely, as it would imply that $\mathrm{FPT}=\mathrm{W}[1]$, a highly…
Given a string $S$ of $n$ symbols, a longest common extension query $\mathsf{LCE}(i,j)$ asks for the length of the longest common prefix of the $i$th and $j$th suffixes of $S$. LCE queries have several important applications in string processing, perhaps most notably to suffix sorting. Recently, Bille et al. (J. Discrete Algorithms 25:42-50, 2014, Proc. CPM 2015: 65-76) described several data structures for answering LCE queries that offers a space-time trade-off between data structure size and query time. In particular, for a parameter $1 \leq τ\leq n$, their best deterministic solution is a …
Synchronization strings are recently introduced by Haeupler and Shahrasbi (STOC 2017) in the study of codes for correcting insertion and deletion errors (insdel codes). They showed that for any parameter $\varepsilon>0$, synchronization strings of arbitrary length exist over an alphabet whose size depends only on $\varepsilon$. Specifically, they obtained an alphabet size of $O(\varepsilon^{-4})$, which left an open question on where the minimal size of such alphabets lies between $Ω(\varepsilon^{-1})$ and $O(\varepsilon^{-4})$. In this work, we partially bridge this gap by providing an improv…
In the Maximum Duo-Preservation String Mapping problem we are given two strings and wish to map the letters of the former to the letters of the latter so as to maximise the number of duos. A duo is a pair of consecutive letters that is mapped to a pair of consecutive letters in the same order. This is complementary to the well-studied Minimum Common String Partition problem, where the goal is to partition the former string into blocks that can be permuted and concatenated to obtain the latter string. Maximum Duo-Preservation String Mapping is APX-hard. After a series of improvements, Brubach […
We study algorithms for solving three problems on strings. The first one is the Most Frequently String Search Problem. The problem is the following. Assume that we have a sequence of $n$ strings of length $k$. The problem is finding the string that occurs in the sequence most often. We propose a quantum algorithm that has a query complexity $\tilde{O}(n \sqrt{k})$. This algorithm shows speed-up comparing with the deterministic algorithm that requires $Ω(nk)$ queries. The second one is searching intersection of two sequences of strings. All strings have the same length $k$. The size of the firs…
The surprising results of Karp, Vazirani and Vazirani and (respectively) Buchbinder et al are examples where rather simple randomizations provide provably better approximations than the corresponding deterministic counterparts for online bipartite matching and (respectively) unconstrained non-monotone submodular maximization. We show that seemingly strong extensions of the deterministic online computation model can at best match the performance of naive randomization. More specifically, for bipartite matching, we show that in the priority model (allowing very general ways to order the input st…
We develop deterministic approximation algorithms for the minimum dominating set problem in the CONGEST model with an almost optimal approximation guarantee. For $ε>1/{\text{poly}}\log Δ$ we obtain two algorithms with approximation factor $(1+ε)(1+\ln (Δ+1))$ and with runtimes $2^{O(\sqrt{\log n \log\log n})}$ and $O(Δ\cdot\text{poly}\log Δ+\text{poly}\log Δ\log^{*} n)$, respectively. Further we show how dominating set approximations can be deterministically transformed into a connected dominating set in the \CONGEST model while only increasing the approximation guarantee by a constant factor.…
In an undirected graph, a $k$-cut is a set of edges whose removal breaks the graph into at least $k$ connected components. The minimum weight $k$-cut can be computed in $O(n^{O(k)})$ time, but when $k$ is treated as part of the input, computing the minimum weight $k$-cut is NP-Hard [Holdschmidt and Hochbaum 1994]. For $\operatorname{poly}(m,n,k)$-time algorithms, the best possible approximation factor is essentially 2 under the small set expansion hypothesis [Manurangsi 2017]. Saran and Vazirani [1995] showed that a $(2 - 2/k)$-approximately minimum weight $k$-cut can be computed by $O(k)$ min…
We present a deterministic distributed $2$-approximation algorithm for the Minimum Weight Vertex Cover problem in the CONGEST model whose round complexity is $O(\log n \log Δ/ \log^2 \log Δ)$. This improves over the currently best known deterministic 2-approximation implied by [KVY94]. Our solution generalizes the $(2+ε)$-approximation algorithm of [BCS17], improving the dependency on $ε^{-1}$ from linear to logarithmic. In addition, for every $ε=(\log Δ)^{-c}$, where $c\geq 1$ is a constant, our algorithm computes a $(2+ε)$-approximation in $O(\log Δ/ \log \log Δ)$~rounds (which is asymptotic…
We present the first deterministic data structures for maintaining approximate minimum vertex cover and maximum matching in a fully dynamic graph $G = (V,E)$, with $|V| = n$ and $|E| =m$, in $o(\sqrt{m}\,)$ time per update. In particular, for minimum vertex cover we provide deterministic data structures for maintaining a $(2+\eps)$ approximation in $O(\log n/\eps^2)$ amortized time per update. For maximum matching, we show how to maintain a $(3+\eps)$ approximation in $O(\min(\sqrt{n}/ε, m^{1/3}/\eps^2))$ {\em amortized} time per update, and a $(4+\eps)$ approximation in $O(m^{1/3}/\eps^2)$ {\…
In this paper, we develop deterministic fully dynamic algorithms for computing approximate distances in a graph with worst-case update time guarantees. In particular, we obtain improved dynamic algorithms that, given an unweighted and undirected graph $G=(V,E)$ undergoing edge insertions and deletions, and a parameter $ 0 < ε\leq 1 $, maintain $(1+ε)$-approximations of the $st$-distance between a given pair of nodes $ s $ and $ t $, the distances from a single source to all nodes ("SSSP"), the distances from multiple sources to all nodes ("MSSP"), or the distances between all nodes ("APSP"). O…
We present improved deterministic distributed algorithms for a number of well-studied matching problems, which are simpler, faster, more accurate, and/or more general than their known counterparts. The common denominator of these results is a deterministic distributed rounding method for certain linear programs, which is the first such rounding method, to our knowledge. A sampling of our end results is as follows. -- An $O(\log^2 Δ\cdot \log n)$-round deterministic distributed algorithm for computing a maximal matching, in $n$-node graphs with maximum degree $Δ$. This is the first improvement …
We give a deterministic $O(hn^{1+1/h})$-time $(2h)$-approximation nonadaptive algorithm for $1$-median selection in $n$-point metric spaces, where $h\in\mathbb{Z}^+\setminus\{1\}$ is arbitrary. Our proof generalizes that of Chang.
Deterministic finite automata are one of the simplest and most practical models of computation studied in automata theory. Their conceptual extension is the non-deterministic finite automata which also have plenty of applications. In this article, we study these models through the lens of succinct data structures where our ultimate goal is to encode these mathematical objects using information-theoretically optimal number of bits along with supporting queries on them efficiently. Towards this goal, we first design a succinct data structure for representing any deterministic finite automaton $\…
Given a set of strings, the shortest common superstring problem is to find the shortest possible string that contains all the input strings. The problem is NP-hard, but a lot of work has gone into designing approximation algorithms for solving the problem. We present the first time and space efficient implementation of the classic greedy heuristic which merges strings in decreasing order of overlap length. Our implementation works in $O(n \log σ)$ time and bits of space, where $n$ is the total length of the input strings in characters, and $σ$ is the size of the alphabet. After index construct…
We introduce a Generalized LU-Factorization (\textbf{GLU}) for low-rank matrix approximation. We relate this to past approaches and extensively analyze its approximation properties. The established deterministic guarantees are combined with sketching ensembles satisfying Johnson-Lindenstrauss properties to present complete bounds. Particularly good performance is shown for the sub-sampled randomized Hadamard transform (SRHT) ensemble. Moreover, the factorization is shown to unify and generalize many past algorithms. It also helps to explain the effect of sketching on the growth factor during G…
A Deterministic $0.401$-Approximation for Non-monotone Submodular Maximization under Matroid Constraints
State Key Lab of Processors, Institute of Computing Technology, Chinese Academy of Sciences（中国科学院计算技术研究所处理器重点实验室）；School of Computer Science and Technology, University of Chinese Academy of Sciences（中国科学院大学计算机科学与技术学院）
We present a deterministic algorithm that given a tree T with n vertices, a starting vertex v and a slackness parameter epsilon > 0, estimates within an additive error of epsilon the cover and return time, namely, the expected time it takes a simple random walk that starts at v to visit all vertices of T and return to v. The running time of our algorithm is polynomial in n/epsilon, and hence remains polynomial in n also for epsilon = 1/n^{O(1)}. We also show how the algorithm can be extended to estimate the expected cover (without return) time on trees.
Given point sets $A$ and $B$ in $\mathbb{R}^d$ where $A$ and $B$ have equal size $n$ for some constant dimension $d$ and a parameter $\varepsilon>0$, we present the first deterministic algorithm that computes, in $n\cdot(\varepsilon^{-1} \log n)^{O(d)}$ time, a perfect matching between $A$ and $B$ whose cost is within a $(1+\varepsilon)$ factor of the optimal under any $\smash{\ell_p}$-norm. Although a Monte-Carlo algorithm with a similar running time is proposed by Raghvendra and Agarwal [J. ACM 2020], the best-known deterministic $\varepsilon$-approximation algorithm takes $Ω(n^{3/2})$ time.…
We study the {\em maximum duo-preservation string mapping} ({\sc Max-Duo}) problem, which is the complement of the well studied {\em minimum common string partition} ({\sc MCSP}) problem. Both problems have applications in many fields including text compression and bioinformatics. Motivated by an earlier local search algorithm, we present an improved approximation and show that its performance ratio is no greater than ${35}/{12} < 2.917$. This beats the current best $3.25$-approximation for {\sc Max-Duo}. The performance analysis of our algorithm is done through a complex yet interesting amort…
We give a deterministic, nearly logarithmic-space algorithm that given an undirected graph $G$, a positive integer $r$, and a set $S$ of vertices, approximates the conductance of $S$ in the $r$-step random walk on $G$ to within a factor of $1+ε$, where $ε>0$ is an arbitrarily small constant. More generally, our algorithm computes an $ε$-spectral approximation to the normalized Laplacian of the $r$-step walk. Our algorithm combines the derandomized square graph operation (Rozenman and Vadhan, 2005), which we recently used for solving Laplacian systems in nearly logarithmic space (Murtagh, Reing…
University of Science and Technology of China（中国科学技术大学）
We study the problem of maximizing a non-monotone, non-negative submodular function subject to a matroid constraint. The prior best-known deterministic approximation ratio for this problem is $\frac{1}{4}-ε$ under $\mathcal{O}(({n^4}/ε)\log n)$ time complexity. We show that this deterministic ratio can be improved to $\frac{1}{4}$ under $\mathcal{O}(nr)$ time complexity, and then present a more practical algorithm dubbed TwinGreedyFast which achieves $\frac{1}{4}-ε$ deterministic ratio in nearly-linear running time of $\mathcal{O}(\frac{n}ε\log\frac{r}ε)$. Our approach is based on a novel algo…
Given an $n$-point metric space $(M,d)$, {\sc metric $1$-median} asks for a point $p\in M$ minimizing $\sum_{x\in M}\,d(p,x)$. We show that for each computable function $f\colon \mathbb{Z}^+\to\mathbb{Z}^+$ satisfying $f(n)=ω(1)$, {\sc metric $1$-median} has a deterministic, $o(n)$-query, $o(f(n)\cdot\log n)$-approximation and nonadaptive algorithm. Previously, no deterministic $o(n)$-query $o(n)$-approximation algorithms are known for {\sc metric $1$-median}. On the negative side, we prove each deterministic $O(n)$-query algorithm for {\sc metric $1$-median} to be not $(δ\log n)$-approximate …
This paper gives new results for synchronization strings, a powerful combinatorial object that allows to efficiently deal with insertions and deletions in various communication settings: $\bullet$ We give a deterministic, linear time synchronization string construction, improving over an $O(n^5)$ time randomized construction. Independently of this work, a deterministic $O(n\log^2\log n)$ time construction was just put on arXiv by Cheng, Li, and Wu. We also give a deterministic linear time construction of an infinite synchronization string, which was not known to be computable before. Both cons…
We give a deterministic polynomial time $2^{O(r)}$-approximation algorithm for the number of bases of a given matroid of rank $r$ and the number of common bases of any two matroids of rank $r$. To the best of our knowledge, this is the first nontrivial deterministic approximation algorithm that works for arbitrary matroids. Based on a lower bound of Azar, Broder, and Frieze [ABF94] this is almost the best possible result assuming oracle access to independent sets of the matroid. There are two main ingredients in our result: For the first, we build upon recent results of Adiprasito, Huh, and Ka…
In this paper we show a new way of constructing deterministic polynomial-time approximation algorithms for computing complex-valued evaluations of a large class of graph polynomials on bounded degree graphs. In particular, our approach works for the Tutte polynomial and independence polynomial, as well as partition functions of complex-valued spin and edge-coloring models. More specifically, we define a large class of graph polynomials $\mathcal C$ and show that if $p\in \cal C$ and there is a disk $D$ centered at zero in the complex plane such that $p(G)$ does not vanish on $D$ for all bounde…
