This article gives an overview of recent theoretical and experimental findings concerning the hydrodynamic interaction between liquid-embedded particles in various confined geometries. A simple unifying description emerges, which accounts for the various findings based on the effect of confinement on conserved fields of the embedding liquid. It shows, in particular, that the hydrodynamic interaction under confinement remains long-ranged, decaying algebraically with inter-particle distance, except for the case of confinement in a rigid linear channel.
We theoretically describe the dynamics of swimmer populations confined in thin liquid films. We first demonstrate that hydrodynamic interactions between confined swimmers only depend on their shape and are independent of their specific swimming mechanism. We also show that due to friction with the walls, confined swimmers do not reorient due to flow gradients but the flow field itself. We then quantify the consequences of these microscopic interaction rules on the large-scale hydrodynamics of isotropic populations. We investigate in details their stability and the resulting phase behavior, hig…
Hydrodynamic forces may significantly affect the motion of polymers. In sheet-like cavities, such as the cell's cytoplasm and microfluidic channels, the hydrodynamic forces are long-range. It is therefore expected that that hydrodynamic interactions will dominate the motion of polymers in sheets and will be manifested by Zimm-like scaling. Quite the opposite, we note here that although the hydrodynamic forces are long-range their overall effect on the motion of polymers vanishes due to the symmetry of the two-dimensional flow. As a result, the predicted scaling of experimental observables such…
This review introduces the elasticity theory of two-dimensional crystals and nematic liquid crystals on curved surfaces, the energetics of topological defects (disclinations, dislocations and pleats) in these ordered phases, and the interaction of defects with the underlying curvature. This chapter concludes with two cases of three-dimensional nematic phases confined to spaces with curved boundaries, namely a torus and a spherical shell.
In this article we develop a theoretical framework to study the hydrodynamic interactions in the presence of a non-flat and no-slip boundary. We calculate the influence of a small amplitude and sinusoidal deformations of a boundary wall in the self mobility and the two body hydrodynamic interactions for spherical particles. We show that the surface roughness enhances the self mobility of a sphere in a way that, for motion in front of a local hump of the surface, the mobility strength decreases while it increases for the motion above a local deep of the rough surface. The influence of the surfa…
We identify problems with the standard complex order parameter formalism for smectic-A (SmA) liquid crystals, and discuss possible alternative descriptions of smectic order. In particular, we suggest an approach based on the real smectic density variation rather than a complex order parameter. This approach gives reasonable numerical results for the smectic layer configuration and director field in sample geometries, and can be used to model smectic liquid crystals under nanoscale confinement for technological applications.
We studied the crystallization of a globular protein, lysozyme, in the cubic phase of the lipid monoolein. The solubility of lysozyme in salt solution decreased by a factor of $\sim 4$ when confined in cubic phase. Calculations and Monte Carlo simulations show that this can be explained by the {\it confinement} of lysozyme molecules to the narrow water cells in the cubic phase.
Two-dimensional nematics possess peculiar properties that have been studied recently using computer simulation and various theoretical models. Here we review our own contribution to the field using density-functional theory, and present some preliminary simulation results on confined two-dimensional nematics. First we discuss the possible stable bulk phases and phase diagrams and the relation between phases and particle geometry. We then explore the adsorption properties on a single substrate and the confinement effects that arise when the fluid is confined between parallel walls. Next, confin…
Studies of random close packing of spheres have advanced our knowledge about the structure of systems such as liquids, glasses, emulsions, granular media, and amorphous solids. When these systems are confined their structural properties change. To understand these changes we study random close packing in finite-sized confined systems, in both two and three dimensions. Each packing consists of a 50-50 binary mixture with particle size ratio 1.4. The presence of confining walls significantly lowers the overall maximum area fraction (or volume fraction in three dimensions). A simple model is pres…
We apply a hybrid Molecular Dynamics and mesoscopic simulation technique to study the dynamics of two dimensional colloidal discs in confined geometries. We calculate the velocity autocorrelation functions, and observe the predicted $t^{-1}$ long time hydrodynamic tail that characterizes unconfined fluids, as well as more complex oscillating behavior and negative tails for strongly confined geometries. Because the $t^{-1}$ tail of the velocity autocorrelation function is cut off for longer times in finite systems, the related diffusion coefficient does not diverge, but instead depends logarith…
In both nature and engineering, loosely packed granular materials are often compacted inside confined geometries. Here, we explore such behaviour in a quasi-two dimensional geometry, where parallel rigid walls provide the confinement. We use the discrete element method to investigate the stress distribution developed within the granular packing as a result of compaction due to the displacement of a rigid piston. We observe that the stress within the packing increases exponentially with the length of accumulated grains, and show an extension to current analytic models which fits the measured st…
Motivated by recent experiments on the rod-like virus bacteriophage fd, confined to circular and annular domains, we present a theoretical study of structural transitions in these geometries. Using the continuum theory of nematic liquid crystals, we examine the competition between bulk elasticity and surface anchoring, mediated by the formation of topological defects. We show analytically that bulk defects are unstable with respect to defects sitting at the boundary. Moreover, in case of an annulus, whose topology does not require the presence of topological defects, under weak anchoring condi…
Previously, we developed a minimal model based on random cooperative strings for the relaxation of supercooled liquids in the bulk and near free interfaces, and we recovered some key experimental observations. In this article, after recalling the main ingredients of the cooperative string model, we study the effective glass transition and surface mobility of various experimentally-relevant confined geometries: freestanding films, supported films, spherical particles, and cylindrical particles, with free interfaces and/or passive substrates. Finally, we introduce a novel way to account for a pu…
We have shown [J.\ Fluid Mech.\ {\bf 592}, 447 (2007)] that swapping (reversing) trajectories in confined suspension flows prevent collisions between particles approaching each other in adjacent streamlines. Here we demonstrate that by inducing layering this hydrodynamic mechanism changes the microstructure of suspensions in a confined Couette flow. Layers occur either in the near-wall regions or span the whole channel width, depending on the strength of the swapping-trajectory effect. While our theory focuses on dilute suspensions, we postulate that this new hydrodynamic mechanism controls fo…
Strongly confined active liquids are subject to unique hydrodynamic interactions due to momentum screening and lubricated friction by the confining walls. Using numerical simulations, we demonstrate that 2D dilute suspensions of fore-aft asymmetric polar swimmers in a Hele-Shaw geometry can exhibit a rich variety of novel phase behaviors depending on particle shape, including: coherent polarized density waves with global alignment, stationary asters, persistent counter-rotating vortices, density shocks and rarefaction waves. We also explain these phenomena using a linear stability analysis and…
Aalto University School of Science and Technology（阿尔托大学理工学院）；The University of Western Ontario（韦仕敦大学）；University of Waterloo（滑铁卢大学）；Brown University（布朗大学）
We propose numerical simulations of viscoelastic fluids based on a hybrid algorithm combining Lattice-Boltzmann models (LBM) and Finite Differences (FD) schemes, the former used to model the macroscopic hydrodynamic equations, and the latter used to model the polymer dynamics. The kinetics of the polymers is introduced using constitutive equations for viscoelastic fluids with finitely extensible non-linear elastic dumbbells with Peterlin's closure (FENE-P). The numerical model is first benchmarked by characterizing the rheological behaviour of dilute homogeneous solutions in various configurat…
Phoretic particles self-propel using self-generated physico-chemical gradients at their surface. Within a suspension, they interact hydrodynamically by setting the fluid around them into motion, and chemically by modifying the chemical background seen by their neighbours. While most phoretic systems evolve in confined environments due to buoyancy effects, most models focus on their interactions in unbounded flows. Here, we propose a first model for the interaction of phoretic particles in Hele-Shaw confinement and show that in this limit, hydrodynamic and phoretic interactions share not only t…
The universal density-force relation is analyzed and the correspondent universal amplitude ratio $B_{real}$ is obtained using the massive field theory approach in fixed space dimensions d=3 up to one-loop order. The layer monomer density profiles of ideal chains and real polymer chains with excluded volume interaction in a good solvent between two parallel repulsive walls, one repulsive and one inert wall are obtained. Besides, taking into account the Derjaguin approximation the layer monomer density profiles for dilute polymer solution confined in semi-infinite space containing mesoscopic sph…
We present a hydrodynamic study of a monolayer of squirmer model microswimmers confined to a boundary by strong gravity using the simulation method of multi-particle collision dynamics. The squirmers interact with each other via their self-generated hydrodynamic flow fields and thereby form a variety of fascinating dynamic states when density and squirmer type are varied. Weak pushers, neutral squirmers, and pullers have an upright orientation. With their flow fields they push neighbors away and thereby form a hydrodynamic Wigner fluid at lower densities. Furthermore, states of fluctuating cha…
We study hydrodynamic slowing-down of a particle moving in a temperature gradient perpendicular to a wall. At distances much smaller than the particle radius, $h\ll a$, lubrication approximation leads to the reduced velocity $u/u_{0}=3\frac{h}{a}\ln \frac{a}{h}$, with respect to the bulk value $u_{0}$. With Brenner's result for confined diffusion, we find that the trapping efficiency, or effective Soret coefficient, increases logarithmically as the particle gets very close to the wall. This provides a quantitative explanation for the recently observed enhancement of thermophoretic trapping at …
Transport of ions in molecular-scale confined spaces is central to all aspects of life and technology: into a crack, it may break steel within days; through a membrane separator, it determines the efficiency of electrochemical energy conversion devices; or through lipid membranes, it steers neural communication. Yet, the direct observation of ion mobility and structuring in sub-nanometer confinement is experimentally challenging and, so far, solely accessible to molecular simulations. Here, we show quantitative, 3D molecularly-resolved ion transportation of aqueous ionic liquid and s-block met…
We consider a random walk in confined geometry, starting from a site and eventually reaching a target site. We calculate analytically the distribution of the occupation time on a third site, before reaching the target site. The obtained distribution is exact, and completely explicit in the case or parallepipedic confining domains. We discuss implications of these results in two different fields: The mean first passage time for the random trap model is computed in dimensions greater than 1, and is shown to display a non-trivial dependence with the source and target positions ; The probability o…
Patterned irradiation of cuprate superconductors with columnar defects allows a new generation of experiments which can probe the properties of vortex liquids by confining them to controlled geometries. Here we show that an analysis of such experiments that combines an inhomogeneous Bose glass scaling theory with the hydrodynamic description of viscous flow of vortex liquids can be used to infer the critical behavior near the Bose glass transition. The shear viscosity is predicted to diverge as $|T-T_{BG}|^{-z}$ at the Bose glass transition, with $z\simeq 6$ the dynamical critical exponent.
We study thermal, fluctuation-induced hydrodynamic interaction forces in a classical, compressible, viscous fluid confined between two rigid, planar walls with no-slip boundary conditions. We calculate hydrodynamic fluctuations using the linearized, stochastic Navier-Stokes formalism of Landau and Lifshitz. The mean fluctuation-induced force acting on the fluid boundaries vanishes in this system, so we evaluate the two-point, time-dependent force correlations. The equal-time correlation function of the forces acting on a single wall gives the force variance, which we show to be finite and inde…
The paper presents a short overview of the theoretical, numerical and experimental works on the critical behavior of a dilute polymer solution of long-flexible polymer chains confined in semi-infinite space restricted by a surface or in a slit geometry of two parallel walls with different adsorbing or repelling properties in respect for polymers as well as in a solution of mesoscopic spherical colloidal particles of one sort or two different sorts. We discuss the application of the massive field theory approach in a fixed space dimensions d=3 up to one loop order for such topics as:(a) the inv…
When an ensemble of particles interact hydrodynamically, they generically display large-scale transient structures such as swirls in sedimenting particles [1], or colloidal strings in sheared suspensions [2]. Understanding these nonequilibrium fluctuations is a very difficult problem, yet they are of great importance for a wide range of processes including pigment deposition in cosmetic or paint films, the transport of microfluidic droplets, ... All these samples concern rigidly confined fluids, which we consider in this paper. We address the collective dynamics of non-Brownian droplets cruisi…
Hydrodynamic interactions between particles confined in a liquid-filled linear channel are known to be screened beyond a distance comparable to the channel width. Using a simple analytical theory and lattice-Boltzmann simulations, we show that the hydrodynamic screening is qualitatively modified when the time-dependent response and finite compressibility of the host liquid are taken into account. Diffusive compression modes in the confined liquid cause the particles to have velocity correlations of unbounded range, whose amplitude decays with time only as $t^{-3/2}$.
The investigation of a dilute solution of phantom ideal ring polymers and ring polymers with excluded volume interactions (EVI) in a good solvent confined in a slit geometry of two parallel repulsive walls and in a solution of colloidal particles of big size was performed. Taking into account the correspondence between the field theoretical $ϕ^4$ $O(n)$-vector model in the limit $n\to 0$ and the behaviour of long-flexible polymers in a good solvent, the correspondent depletion forces and the forces which exert phantom ideal ring polymers and ring polymers with EVI on the walls were obtained in…
Motivated by subdiffusive motion of bio-molecules observed in living cells we study the stochastic properties of a non-Brownian particle whose motion is governed by either fractional Brownian motion or the fractional Langevin equation and restricted to a finite domain. We investigate by analytic calculations and simulations how time-averaged observables (e.g., the time averaged mean squared displacement and displacement correlation) are affected by spatial confinement and dimensionality. In particular we study the degree of weak ergodicity breaking and scatter between different single trajecto…
Describing the diffusion of particles through crowded, confined environments with which they can interact is of considerable biological and technological interest. Under conditions where the confinement dimensions become comparable to the particle dimensions, steric interactions between particles, as well as particle-wall interactions, will play a crucial role in determining transport properties. To elucidate the effects of these interactions on particle transport, we consider the diffusion and binding of finite-size particles within a channel whose diameter is comparable to the size of the pa…
Confined granular fluids, placed in a shallow box that is vibrated vertically, can achieve homogeneous stationary states thanks to energy injection mechanisms that take place throughout the system. These states can be stable even at high densities and inelasticities allowing for a detailed analysis of the hydrodynamic modes that govern the dynamics of granular fluids. Analyzing the decay of the time correlation functions it is shown that there is a crossover between a quasielastic regime in which energy evolves as a slow mode, to a inelastic regime, with energy slaved to the other conserved fi…
Monte Carlo simulations are used to study the conformational properties of a folded semiflexible polymer confined to a long channel. We measure the variation in the conformational free energy with respect to the end-to-end distance of the polymer, and from these functions we extract the free energy of the hairpin fold, as well as the entropic force arising from interactions between the portions of the polymer that overlap along the channel. We consider the scaling of the free energies with respect to varying the persistence length of the polymer, as well as the channel dimensions for confineme…
Exploring the role of hydrodynamic interactions in spherically-confined drying colloidal suspensions
Auburn University（奥本大学）；Leibniz-Institut für Polymerforschung Dresden e.V.（德累斯顿莱布尼茨聚合物研究所）；Technische Universität Dresden（德累斯顿工业大学）；Johannes Gutenberg University Mainz（美因茨约翰内斯·古腾堡大学）
Geometric confinement plays an important role in the dynamics of natural and synthetic microswimmers from bacterial cells to self-propelled particles in high-throughput microfluidic devices. However, little is known about the effects of geometric confinement on the emergent global patterns in such self-propelled systems. Recent experiments on bacterial cells give conflicting reports of cells spontaneously organizing into a spiral vortex in a thin cylindrical droplet and cells aggregating at the inner boundary in a spherical droplet. We investigate here, in an idealized physical model, the inte…
The massive field theory approach in fixed space dimensions $d=3$ is applied to investigate a dilute solution of long-flexible polymer chains in a good solvent between two parallel repulsive walls, two inert walls and for the mixed case of one inert and one repulsive wall. The well known correspondence between the field theoretical $ϕ^4$ O(n)-vector model in the limit $n\to 0$ and the behavior of long-flexible polymer chains in a good solvent is used to calculate the depletion interaction potential and the depletion force up to one-loop order. Our investigations include modification of renorma…
Broadband molecular dynamics simulation of fluid inertial effects in confined Brownian motion
Université de Mons（蒙斯大学）；Univ. Bordeaux, CNRS, LOMA, UMR 5798（波尔多大学，法国国家科学研究中心，LOMA联合实验室）；University of Vienna（维也纳大学）；Ecole Polytechnique, Institut Polytechnique de Paris（巴黎综合理工学院，巴黎理工学院）
Comprehensive understanding of particle motion in microfluidic devices is essential to unlock novel technologies for shape-based separation and sorting of microparticles like microplastics, cells and crystal polymorphs. Such particles interact hydrodynamically with confining surfaces, thus altering their trajectories. These hydrodynamic interactions are shape-dependent and can be tuned to guide a particle along a specific path. We produce strongly confined particles with various shapes in a shallow microfluidic channel via stop flow lithography. Regardless of their exact shape, particles with …
We investigate the hydrodynamic effects on the dynamics of critical concentration fluctuations in multicomponent fluid membranes. Two geometrical cases are considered; (i) confined membrane case and (ii) supported membrane case. We numerically calculate the wavenumber dependence of the effective diffusion coefficient by changing the temperature and/or the thickness of the bulk fluid. For some limiting cases, the result is compared with the previously obtained analytical expression. An analogy of the multicomponent membrane to 2D microemulsion is explored for the confined membrane geometry.
When the motion of a motile cell is observed closely, it appears erratic, and yet the combination of nonequilibrium forces and surfaces can produce striking examples of organization in microbial systems. While most of our current understanding is based on bulk systems or idealized geometries, it remains elusive how and at which length scale self-organization emerges in complex geometries. Here, using experiments, analytical and numerical calculations we study the motion of motile cells under controlled microfluidic conditions, and demonstrate that probability flux loops organize active motion …
We study the collective motion of confined spherical microswimmers such as active colloids which we model by so-called squirmers. To simulate hydrodynamic flow fields including thermal noise, we use the method of multi-particle collision dynamics. We demonstrate that hydrodynamic near fields acting between squirmers as well as squirmers and bounding walls crucially determine their collective motion. In particular, with increasing density we observe a clear phase separation into a gas-like and cluster phase for neutral squirmers whereas strong pushers and pullers more gradually approach the hex…
Flowing blood displays a phenomenon called margination, in which leukocytes and platelets are preferentially found near blood vessel walls, while erythrocytes are depleted from these regions. Here margination is investigated using direct hydrodynamic simulations of a binary suspension of stiff (s) and floppy (f) capsules, as well as a stochastic model that incorporates the key particle transport mechanisms in suspensions -- wall-induced hydrodynamic migration and shear-induced pair collisions. The stochastic model allows the relative importance of these two mechanisms to be directly evaluated …
Thin elastic solids are easily deformed into a myriad of three-dimensional shapes, which may contain sharp localized structures as in a crumpled candy wrapper, or have smooth and diffuse features like the undulating edge of a flower. Anticipating and controlling these morphologies is crucial to a variety of applications involving textiles, synthetic skins, and inflatable structures. Here we show that a "wrinkle-to-crumple" transition, previously observed in specific settings, is a ubiquitous response for confined sheets. This unified picture is borne out of a suite of model experiments on poly…
The spreading of one- and two-component polymer nanodroplets is studied using molecular dynamics simulation in a cylindrical geometry. The droplets consist of polymer chains of length 10, 40, and 100 monomers per chain described by the bead-spring model spreading on a flat surface with a surface-coupled Langevin thermostat. Each droplet contains ~350,000 monomers. The dynamics of the individual components of each droplet are analyzed and compared to the dynamics of single component droplets for the spreading rates of the precursor foot and bulk croplet, the time evolution of the contact angle,…
The motion of an optically trapped sphere constrained by the vicinity of a wall is investigated at times where hydrodynamic memory is significant. First, we quantify, in bulk, the influence of confinement arising from the trapping potential on the sphere's velocity autocorrelation function $C(t)$. Next, we study the splitting of $C(t)$ into $C_\parallel(t)$ and $C_\perp(t)$, when the sphere is approached towards a surface. Thereby, we monitor the crossover from a slow $t^{-3/2}$ long-time tail, away from the wall, to a faster $t^{-5/2}$ decay, due to the subtle interplay between hydrodynamic b…
When a Coulombic fluid is confined between two parallel charged plates, an exact relation links the difference of ionic densities at contact with the plates, to the surface charges of these boundaries. It no longer applies when the boundaries are curved, and we work out how it generalizes when the fluid is confined between two concentric spheres (or cylinders), in two and in three space dimensions. The analysis is thus performed within the cell model picture. The generalized contact relation opens the possibility to derive new exact expressions, of particular interest in the regime of strong c…
The transport of deformable objects including polymer particles, vesicles and cells, has been a subject of interest for several decades where the majority of experimental and theoretical studies have been focused on circular tubes. Due to advances in microfluidics, there is a need to study the transport of individual deformable particles in rectangular microchannels where corner flows can be important. In this study, we report measurements of hydrodynamic mobility of confined polymeric particles, vesicles and cancer cells in a linear microchannel with square cross-section. Our operating condit…
We extend a lattice Boltzmann algorithm of liquid crystal hydrodynamics to include an applied electric field. The approach solves the equations of motion written in terms of a tensor order parameter. Back-flow effects and the hydrodynamics of topological defects are included. We investigate some of the dynamics relevant to liquid crystal devices; in particular defect-mediated motion of domain walls relevant to the nucleation of states useful in pi-cells. An anisotropy in the domain wall velocity is seen because defects of different topology couple differently to the flow field.
