We present a hydrodynamic study of a monolayer of squirmer model microswimmers confined to a boundary by strong gravity using the simulation method of multi-particle collision dynamics. The squirmers interact with each other via their self-generated hydrodynamic flow fields and thereby form a variety of fascinating dynamic states when density and squirmer type are varied. Weak pushers, neutral squirmers, and pullers have an upright orientation. With their flow fields they push neighbors away and thereby form a hydrodynamic Wigner fluid at lower densities. Furthermore, states of fluctuating chains and trimers, of kissing, and at large densities a global cluster exist. Finally, pushers at all densities can tilt against the wall normal and their in-plane velocities align to show swarming. It turns into chaotic swarming for strong pushers at high densities. We characterize all these states quantitatively.
We run numerical simulations of strongly confined suspensions of model spherical swimmers called "squirmers". Because of the confinement, the Stokeslet dipoles generated by the particles are quickly screened and the far-field flow is dominated by the source dipole for all the different kinds of squirmers. However, we show that the collective behavior of the suspension still depends on the self-propelling mechanism of the swimmers as polar states can only be observed for neutral squirmers. We demonstrate that the near-field hydrodynamic interactions play a crucial role in the alignment of the o…
A concentrated, vertical monolayer of identical spherical squirmers, which may be bottom-heavy, and which are subjected to a linear shear flow, is modelled computationally by two different methods: Stokesian dynamics, and a lubrication-theory-based method. Inertia is negligible. The aim is to compute the effective shear viscosity and, where possible, the normal stress differences as functions of the areal fraction of spheres $ϕ$, the squirming parameter $β$ (proportional to the ratio of a squirmer's active stresslet to its swimming speed), the ratio $Sq$ of swimming speed to a typical speed of…
The incessant swimming motion of microbes in dense suspensions can give rise to striking collective motions and coherent structures. However, theoretical investigations of these structures typically utilize either computationally demanding numerical simulations, or simplified continuum models. Here we analytically investigate the collective dynamics of a dense array of steady, spherical squirmers. We first calculate the forces and torques acting on two closely-separated squirmers, through solving the Stokes equations to second-order in the ratio of mean spacing to squirmer radius. This lubrica…
The squirmer is a simple yet instructive model for microswimmers, which employs an effective slip velocity on the surface of a spherical swimmer to describe its self-propulsion. We solve the hydrodynamic flow problem with the lattice Boltzmann (LB) method, which is well-suited for time-dependent problems involving complex boundary conditions. Incorporating the squirmer into LB is relatively straight-forward, but requires an unexpectedly fine grid resolution to capture the physical flow fields and behaviors accurately. We demonstrate this using four basic hydrodynamic tests: Two for the far-fie…
We present a lattice Boltzmann study of the hydrodynamics of a fully resolved squirmer, radius R, confined in a slab of fluid between two no-slip walls. We show that the coupling between hydrodynamics and short-range repulsive interactions between the swimmer and the surface can lead to hydrodynamic trapping of both pushers and pullers at the wall, and to hydrodynamic oscillations in the case of a pusher. We further show that a pusher moves significantly faster when close to a surface than in the bulk, whereas a puller undergoes a transition between fast motion and a dynamical standstill accor…
Microorganisms navigate through fluid, often confined by complex environments, to survive and sustain life. Inspired by this fact, we consider a model system and seek to understand the wall curvature driven dynamics of a squirmer, a mathematical model for a microswimmer, using (i) lattice Boltzmann simulations and (ii) analytical theory by \citet{dario_gareth}. The instantaneous dynamics of the system is presented in terms of fluid velocity fields, and the translational and angular velocities of the microswimmer, whereas the long time dynamics is presented by plotting the squirmer trajectories…
Micro-swimmers can serve as cargo carriers that move deep inside complex flow networks. When a school collectively entrains the surrounding fluid, their transport capacity can be enhanced. This effect is quantified with good agreement between experiments with self-propelled droplets and a confined Brinkman squirmer model. The volume of liquid entrained can be much larger than the droplet itself, amplifying the effective cargo capacity over an order of magnitude, even for dilute schools. Hence, biological and engineered swimmers can efficiently transport materials into confined environments.
It has been recently shown that a colloidal monolayer, e.g., formed at a fluid interface or by means of a suitable confining potential, exhibits anomalous collective diffusion. This is a consequence of the hydrodynamic interactions mediated by the three-dimensional (3D) ambient fluid when the particles are confined to reside on a two-dimensional (2D) manifold. We study theoretically and with numerical simulations the crossover from normal to anomalous diffusion as the particles are, in real systems, confined by a 3D external potential and thus have the possibility to fluctuate out of the 2D ma…
Using the Parsons Lee theory we examined the effect of shape anisotropy and the wall to wall separation on the phase behavior of the hard parallelepiped rods with dimensions L, D, and D (L>D) in such narrow slitlike pores which only one homeotropic layer can form. The phase structures, including biaxiality, planar nematic layering transition as well as planar to homeotropic, were studied for some separations in the range 2.5D<H<10.0D for H-D<L<H.
We investigate the structural properties of a two-dimensional system of ellipsoidal particles carrying a linear quadrupole moment in their center. These particles represent a simple model for a variety of uncharged, non-polar conjugated organic molecules. Using optimization tools based on ideas of Evolutionary Algorithms, we first examine the ground state structures as we vary the aspect ratio of the particles and the pressure. Interestingly, we find, besides the intuitively expected T-like configurations, a variety of complex structures, characterized with up to three different particle orien…
Liquid-crystalline ordering in vertically vibrated granular monolayers confined in annuli of different sizes is examined. The annuli consist of circular cavities with a central circular obstruction. In the absence of the central obstruction cylinders of low aspect-ratio exhibit tetratic order, except for the existence of four defects which restore the symmetry broken by the circular confinement. This behaviour is demanded by topology in systems with strong anchoring properties at the surface. By contrast, topology dictates that the annular geometry is compatible with a distorted tetratic phase…
Disorder-induced persistent random motion and trapping of microswimmers
Max Planck Institute for the Physics of Complex Systems（马克斯·普朗克复杂系统物理研究所）；Institute of Numerical Mathematics and Optimization, Technische Universität Bergakademie Freiberg（弗莱贝格工业大学数值数学与优化研究所）；Faculty of Informatics/Mathematics, HTW Dresden（德累斯顿应用技术大学信息/数学学院）；Center for Systems Biology Dresden（德累斯顿系统生物学中心）；Cluster of Excellence, Physics of Life, TU Dresden（德累斯顿工业大学“生命物理学”卓越集群）
Grazing Incidence X-ray Diffraction (GIXD) studies of monolayers of biomolecules at the air-water interface give quantitative information of in-plane packing, coherence lengths of the ordered diffracting crystalline domains and the orientation of hydrocarbon chains. Rheo-GIXD measurements revel quantitative changes in the monolayer under shear. Here we report GIXD studies of monolayers of Alamethicin peptide, DPPC lipid and their mixtures at the air-water interface under the application of steady shear stresses. The Alamethicin monolayer and the mixed monolayer show flow jamming transition. On…
Laboratory realizations of 2D plasma crystals typically involve monodisperse microparticles confined into horizontal monolayers in radio-frequency (rf) plasma sheaths. This gives rise to the so-called plasma wakes beneath the microparticles. The presence of wakes renders the interactions in such systems non-reciprocal, a fact that can lead to a quite different behaviour from the one expected for their reciprocal counterparts. Here we examine the buckling of a hexagonal 2D plasma crystal, occurring as the confinement strength is decreased, taking explicitly into account the non-reciprocity of t…
We introduce a Rigid-Body Fluctuating Immersed Boundary (RB-FIB) method to perform large-scale Brownian dynamics simulations of suspensions of rigid particles in fully confined domains, without any need to explicitly construct Green's functions or mobility operators. In the RB-FIB approach, discretized fluctuating Stokes equations are solved with prescribed boundary conditions in conjunction with a rigid-body immersed boundary method to discretize arbitrarily-shaped colloidal particles with no-slip or active-slip prescribed on their surface. We design a specialized Split--Euler--Maruyama tempo…
