We study Bayesian discriminative inference given a model family $p(c,\x, θ)$ that is assumed to contain all our prior information but still known to be incorrect. This falls in between "standard" Bayesian generative modeling and Bayesian regression, where the margin $p(\x,θ)$ is known to be uninformative about $p(c|\x,θ)$. We give an axiomatic proof that discriminative posterior is consistent for conditional inference; using the discriminative posterior is standard practice in classical Bayesian regression, but we show that it is theoretically justified for model families of joint densities as well. A practical benefit compared to Bayesian regression is that the standard methods of handling missing values in generative modeling can be extended into discriminative inference, which is useful if the amount of data is small. Compared to standard generative modeling, discriminative posterior results in better conditional inference if the model family is incorrect. If the model family contains also the true model, the discriminative posterior gives the same result as standard Bayesian generative modeling. Practical computation is done with Markov chain Monte Carlo.
For predictive evaluation based on quasi-posterior distributions, we develop a new information criterion, the posterior covariance information criterion (PCIC. PCIC generalises the widely applicable information criterion WAIC so as to effectively handle predictive scenarios where likelihoods for the estimation and the evaluation of the model may be different. A typical example of such scenarios is the weighted likelihood inference, including prediction under covariate shift and counterfactual prediction. The proposed criterion utilises a posterior covariance form and is computed by using only …
Quantile regression is a powerful data analysis tool that accommodates heterogeneous covariate-response relationships. We find that by coupling the asymmetric Laplace working likelihood with appropriate shrinkage priors, we can deliver posterior inference that automatically adapts to possible sparsity in quantile regression analysis. After a suitable adjustment on the posterior variance, the posterior inference provides asymptotically valid inference under heterogeneity. Furthermore, the proposed approach leads to oracle asymptotic efficiency for the active (nonzero) quantile regression coeffi…
Gaussian Comparison Theorems for High-Dimensional Posterior Inference
Department of Physics, Duke University（杜克大学物理系）；Departments of Statistical Science and Electrical and Computer Engineering, Duke University（杜克大学统计科学与电气与计算机工程系）
Bayesian and other likelihood-based methods require specification of a statistical model and may not be fully satisfactory for inference on quantities, such as quantiles, that are not naturally defined as model parameters. In this paper, we construct a direct and model-free Gibbs posterior distribution for multivariate quantiles. Being model-free means that inferences drawn from the Gibbs posterior are not subject to model misspecification bias, and being direct means that no priors for or marginalization over nuisance parameters are required. We show here that the Gibbs posterior enjoys a roo…
In the density estimation model, the question of adaptive inference using Pólya tree-type prior distributions is considered. A class of prior densities having a tree structure, called spike-and-slab Pólya trees, is introduced. For this class, two types of results are obtained: first, the Bayesian posterior distribution is shown to converge at the minimax rate for the supremum norm in an adaptive way, for any Hölder regularity of the true density between $0$ and $1$, thereby providing adaptive counterparts to the results for classical Pólya trees in Castillo (2017). Second, the question of unce…
Max Planck Institute for Intelligent Systems（马克斯·普朗克智能系统研究所）；Microsoft Research Cambridge（微软研究院剑桥实验室）
Computer vision is hard because of a large variability in lighting, shape, and texture; in addition the image signal is non-additive due to occlusion. Generative models promised to account for this variability by accurately modelling the image formation process as a function of latent variables with prior beliefs. Bayesian posterior inference could then, in principle, explain the observation. While intuitively appealing, generative models for computer vision have largely failed to deliver on that promise due to the difficulty of posterior inference. As a result the community has favoured effic…
How can one perform Bayesian inference on stochastic simulators with intractable likelihoods? A recent approach is to learn the posterior from adaptively proposed simulations using neural network-based conditional density estimators. However, existing methods are limited to a narrow range of proposal distributions or require importance weighting that can limit performance in practice. Here we present automatic posterior transformation (APT), a new sequential neural posterior estimation method for simulation-based inference. APT can modify the posterior estimate using arbitrary, dynamically upd…
Standard Bayesian inference is known to be sensitive to model misspecification, leading to unreliable uncertainty quantification and poor predictive performance. However, finding generally applicable and computationally feasible methods for robust Bayesian inference under misspecification has proven to be a difficult challenge. An intriguing, easy-to-use, and widely applicable approach is to use bagging on the Bayesian posterior ("BayesBag"); that is, to use the average of posterior distributions conditioned on bootstrapped datasets. In this paper, we develop the asymptotic theory of BayesBag,…
IIt is known that a statistically significant treatment may not be clinically significant. A quantity that can be used to assess clinical significance is called the minimum clinically important difference (MCID), and inference on the MCID is an important and challenging problem. Modeling for the purpose of inference on the MCID is non-trivial, and concerns about bias from a misspecified parametric model or inefficiency from a nonparametric model motivate an alternative approach to balance robustness and efficiency. In particular, a recently proposed representation of the MCID as the minimizer …
In mathematical finance, Levy processes are widely used for their ability to model both continuous variation and abrupt, discontinuous jumps. These jumps are practically relevant, so reliable inference on the feature that controls jump frequencies and magnitudes, namely, the Levy density, is of critical importance. A specific obstacle to carrying out model-based (e.g., Bayesian) inference in such problems is that, for general Levy processes, the likelihood is intractable. To overcome this obstacle, here we adopt a Gibbs posterior framework that updates a prior distribution using a suitable los…
Many modern data analysis problems involve inferences from streaming data. However, streaming data is not easily amenable to the standard probabilistic modeling approaches, which assume that we condition on finite data. We develop population variational Bayes, a new approach for using Bayesian modeling to analyze streams of data. It approximates a new type of distribution, the population posterior, which combines the notion of a population distribution of the data with Bayesian inference in a probabilistic model. We study our method with latent Dirichlet allocation and Dirichlet process mixtur…
University of Liège（列日大学）；University of Vienna（维也纳大学）
We present extensive empirical evidence showing that current Bayesian simulation-based inference algorithms can produce computationally unfaithful posterior approximations. Our results show that all benchmarked algorithms -- (Sequential) Neural Posterior Estimation, (Sequential) Neural Ratio Estimation, Sequential Neural Likelihood and variants of Approximate Bayesian Computation -- can yield overconfident posterior approximations, which makes them unreliable for scientific use cases and falsificationist inquiry. Failing to address this issue may reduce the range of applicability of simulation…
Probabilistic programs provide an expressive representation language for generative models. Given a probabilistic program, we are interested in the task of posterior inference: estimating a latent variable given a set of observed variables. Existing techniques for inference in probabilistic programs often require choosing many hyper-parameters, are computationally expensive, and/or only work for restricted classes of programs. Here we formulate inference as masked language modeling: given a program, we generate a supervised dataset of variables and assignments, and randomly mask a subset of th…
We propose a general framework using spike-and-slab prior distributions to aid with the development of high-dimensional Bayesian inference. Our framework allows inference with a general quasi-likelihood function. We show that highly efficient and scalable Markov Chain Monte Carlo (MCMC) algorithms can be easily constructed to sample from the resulting quasi-posterior distributions. We study the large scale behavior of the resulting quasi-posterior distributions as the dimension of the parameter space grows, and we establish several convergence results. In large-scale applications where computa…
National University of Singapore（新加坡国立大学）；MIT（麻省理工学院）
A multi-layer deep Gaussian process (DGP) model is a hierarchical composition of GP models with a greater expressive power. Exact DGP inference is intractable, which has motivated the recent development of deterministic and stochastic approximation methods. Unfortunately, the deterministic approximation methods yield a biased posterior belief while the stochastic one is computationally costly. This paper presents an implicit posterior variational inference (IPVI) framework for DGPs that can ideally recover an unbiased posterior belief and still preserve time efficiency. Inspired by generative …
Gatsby Computational Neuroscience Unit（盖茨比计算神经科学单元）；University College London（伦敦大学学院）
Sparse variational approximations allow for principled and scalable inference in Gaussian Process (GP) models. In settings where several GPs are part of the generative model, theses GPs are a posteriori coupled. For many applications such as regression where predictive accuracy is the quantity of interest, this coupling is not crucial. Howewer if one is interested in posterior uncertainty, it cannot be ignored. A key element of variational inference schemes is the choice of the approximate posterior parameterization. When the number of latent variables is large, mean field (MF) methods provide…
This work studies the large sample properties of the posterior-based inference in the curved exponential family under increasing dimension. The curved structure arises from the imposition of various restrictions on the model, such as moment restrictions, and plays a fundamental role in econometrics and others branches of data analysis. We establish conditions under which the posterior distribution is approximately normal, which in turn implies various good properties of estimation and inference procedures based on the posterior. In the process we also revisit and improve upon previous results …
Predictive variational inference: Learn the predictively optimal posterior distribution
College of Information and Computer Sciences, University of Massachusetts Amherst（马萨诸塞大学阿默斯特分校信息与计算机科学学院）；Department of Statistics and Data Sciences, University of Texas, Austin（德克萨斯大学奥斯汀分校统计与数据科学系）
Harvard T. H. Chan School of Public Health（哈佛大学陈曾熙公共卫生学院）；University of Oxford（牛津大学）；University of British Columbia（不列颠哥伦比亚大学）；MIT（麻省理工学院）
Bayesian inference typically requires the computation of an approximation to the posterior distribution. An important requirement for an approximate Bayesian inference algorithm is to output high-accuracy posterior mean and uncertainty estimates. Classical Monte Carlo methods, particularly Markov Chain Monte Carlo, remain the gold standard for approximate Bayesian inference because they have a robust finite-sample theory and reliable convergence diagnostics. However, alternative methods, which are more scalable or apply to problems where Markov Chain Monte Carlo cannot be used, lack the same f…
We propose a vector-valued regression problem whose solution is equivalent to the reproducing kernel Hilbert space (RKHS) embedding of the Bayesian posterior distribution. This equivalence provides a new understanding of kernel Bayesian inference. Moreover, the optimization problem induces a new regularization for the posterior embedding estimator, which is faster and has comparable performance to the squared regularization in kernel Bayes' rule. This regularization coincides with a former thresholding approach used in kernel POMDPs whose consistency remains to be established. Our theoretical …
Statistical inference can be seen as information processing involving input information and output information that updates belief about some unknown parameters. We consider the Bayesian framework for making inferences about dynamical systems from ergodic observations, where the Bayesian procedure is based on the Gibbs posterior inference, a decision process generalization of standard Bayesian inference where the likelihood is replaced by the exponential of a loss function. In the case of direct observation and almost-additive loss functions, we prove an exponential convergence of the a poster…
Sorbonne Université（索邦大学）；Université de Paris（巴黎大学）；University College London（伦敦大学学院）；Institut d’Astrophysique de Paris（巴黎天体物理研究所）；Flatiron Institute（弗莱提荣研究所）
High-dimensional probability density estimation for inference suffers from the "curse of dimensionality". For many physical inference problems, the full posterior distribution is unwieldy and seldom used in practice. Instead, we propose direct estimation of lower-dimensional marginal distributions, bypassing high-dimensional density estimation or high-dimensional Markov chain Monte Carlo (MCMC) sampling. By evaluating the two-dimensional marginal posteriors we can unveil the full-dimensional parameter covariance structure. We additionally propose constructing a simple hierarchy of fast neural …
Sampling-Based Accuracy Testing of Posterior Estimators for General Inference
Mila – Quebec AI Institute（米拉-魁北克人工智能研究所）；Université de Montréal（蒙特利尔大学）；CIELA Institute（CIELA研究所）；Flatiron Institute Center for Computational Mathematics（弗拉蒂龙研究所计算数学中心）
本文提出 TARP 覆盖率测试，通过随机点与采样估计生成式后验估计器的覆盖概率，无需后验评估，可在高维空间中识别现有方法无法发现的不准确推断。
One of the core problems in statistical models is the estimation of a posterior distribution. For topic models, the problem of posterior inference for individual texts is particularly important, especially when dealing with data streams, but is often intractable in the worst case. As a consequence, existing methods for posterior inference are approximate and do not have any guarantee on neither quality nor convergence rate. In this paper, we introduce a provably fast algorithm, namely Online Maximum a Posteriori Estimation (OPE), for posterior inference in topic models. OPE has more attractive…
Amortised inference enables scalable learning of sequential latent-variable models (LVMs) with the evidence lower bound (ELBO). In this setting, variational posteriors are often only partially conditioned. While the true posteriors depend, e.g., on the entire sequence of observations, approximate posteriors are only informed by past observations. This mimics the Bayesian filter -- a mixture of smoothing posteriors. Yet, we show that the ELBO objective forces partially-conditioned amortised posteriors to approximate products of smoothing posteriors instead. Consequently, the learned generative …
An important feature of Bayesian statistics is the opportunity to do sequential inference: the posterior distribution obtained after seeing a dataset can be used as prior for a second inference. However, when Monte Carlo sampling methods are used for inference, we only have a set of samples from the posterior distribution. To do sequential inference, we then either have to evaluate the second posterior at only these locations and reweight the samples accordingly, or we can estimate a functional description of the posterior probability distribution from the samples and use that as prior for the…
The Cut posterior and related Semi-Modular Inference are Generalised Bayes methods for Modular Bayesian evidence combination. Analysis is broken up over modular sub-models of the joint posterior distribution. Model-misspecification in multi-modular models can be hard to fix by model elaboration alone and the Cut posterior and SMI offer a way round this. Information entering the analysis from misspecified modules is controlled by an influence parameter $η$ related to the learning rate. This paper contains two substantial new methods. First, we give variational methods for approximating the Cut …
The development of statistical methods for valid and efficient probabilistic inference without prior distributions has a long history. Fisher's fiducial inference is perhaps the most famous of these attempts. We argue that, despite its seemingly prior-free formulation, fiducial and its various extensions are not prior-free and, therefore, do not meet the requirements for prior-free probabilistic inference. In contrast, the inferential model (IM) framework is genuinely prior-free and is shown to be a promising new method for generating both valid and efficient probabilistic inference. With a br…
The Alan Turing Institute（艾伦·图灵研究所）；University of Warwick（华威大学）
We advocate an optimization-centric view on and introduce a novel generalization of Bayesian inference. Our inspiration is the representation of Bayes' rule as infinite-dimensional optimization problem (Csiszar, 1975; Donsker and Varadhan; 1975, Zellner; 1988). First, we use it to prove an optimality result of standard Variational Inference (VI): Under the proposed view, the standard Evidence Lower Bound (ELBO) maximizing VI posterior is preferable to alternative approximations of the Bayesian posterior. Next, we argue for generalizing standard Bayesian inference. The need for this arises in s…
Carnegie Mellon University（卡内基梅隆大学）；University of California San Diego（加利福尼亚大学圣地亚哥分校）
The variational autoencoder (VAE) is a popular combination of deep latent variable model and accompanying variational learning technique. By using a neural inference network to approximate the model's posterior on latent variables, VAEs efficiently parameterize a lower bound on marginal data likelihood that can be optimized directly via gradient methods. In practice, however, VAE training often results in a degenerate local optimum known as "posterior collapse" where the model learns to ignore the latent variable and the approximate posterior mimics the prior. In this paper, we investigate pos…
Non-negative Matrix Factorization (NMF) is a popular tool for data exploration. Bayesian NMF promises to also characterize uncertainty in the factorization. Unfortunately, current inference approaches such as MCMC mix slowly and tend to get stuck on single modes. We introduce a novel approach using rapidly-exploring random trees (RRTs) to asymptotically cover regions of high posterior density. These are placed in a principled Bayesian framework via an online extension to nonparametric variational inference. On experiments on real and synthetic data, we obtain greater coverage of the posterior …
When working with multimodal Bayesian posterior distributions, Markov chain Monte Carlo (MCMC) algorithms have difficulty moving between modes, and default variational or mode-based approximate inferences will understate posterior uncertainty. And, even if the most important modes can be found, it is difficult to evaluate their relative weights in the posterior. Here we propose an approach using parallel runs of MCMC, variational, or mode-based inference to hit as many modes or separated regions as possible and then combine these using Bayesian stacking, a scalable method for constructing a we…
We present a discriminative nonparametric latent feature relational model (LFRM) for link prediction to automatically infer the dimensionality of latent features. Under the generic RegBayes (regularized Bayesian inference) framework, we handily incorporate the prediction loss with probabilistic inference of a Bayesian model; set distinct regularization parameters for different types of links to handle the imbalance issue in real networks; and unify the analysis of both the smooth logistic log-loss and the piecewise linear hinge loss. For the nonconjugate posterior inference, we present a simpl…
Amortized Simulation-Based Inference in Generalized Bayes via Neural Posterior Estimation
Department of Statistics, University of Oxford, Oxford, United Kingdom（英国牛津大学统计系）；Department of Statistics, University of Auckland, Auckland, New Zealand（新西兰奥克兰大学统计系）
Korea Advanced Institute of Science and Technology (KAIST)（韩国科学技术院）；University of Seoul（首尔市立大学）；EWHA Womans University（梨花女子大学）
A simulation is useful when the phenomenon of interest is either expensive to regenerate or irreproducible with the same context. Recently, Bayesian inference on the distribution of the simulation input parameter has been implemented sequentially to minimize the required simulation budget for the task of simulation validation to the real-world. However, the Bayesian inference is still challenging when the ground-truth posterior is multi-modal with a high-dimensional simulation output. This paper introduces a regularization technique, namely Neural Posterior Regularization (NPR), which enforces…
The Kalman filter (KF) is used in a variety of applications for computing the posterior distribution of latent states in a state space model. The model requires a linear relationship between states and observations. Extensions to the Kalman filter have been proposed that incorporate linear approximations to nonlinear models, such as the extended Kalman filter (EKF) and the unscented Kalman filter (UKF). However, we argue that in cases where the dimensionality of observed variables greatly exceeds the dimensionality of state variables, a model for $p(\text{state}|\text{observation})$ proves bot…
In this paper we consider a Bayesian framework for making inferences about dynamical systems from ergodic observations. The proposed Bayesian procedure is based on the Gibbs posterior, a decision theoretic generalization of standard Bayesian inference. We place a prior over a model class consisting of a parametrized family of Gibbs measures on a mixing shift of finite type. This model class generalizes (hidden) Markov chain models by allowing for long range dependencies, including Markov chains of arbitrarily large orders. We characterize the asymptotic behavior of the Gibbs posterior distribu…
Hierarchical models are versatile tools for joint modeling of data sets arising from different, but related, sources. Fully Bayesian inference may, however, become computationally prohibitive if the source-specific data models are complex, or if the number of sources is very large. To facilitate computation, we propose an approach, where inference is first made independently for the parameters of each data set, whereupon the obtained posterior samples are used as observed data in a substitute hierarchical model, based on a scaled likelihood function. Compared to direct inference in a full hier…
We provide a general solution to a fundamental open problem in Bayesian inference, namely poor uncertainty quantification, from a frequency standpoint, of Bayesian methods in misspecified models. While existing solutions are based on explicit Gaussian approximations of the posterior, or computationally onerous post-processing procedures, we demonstrate that correct uncertainty quantification can be achieved by replacing the usual posterior with an intuitive approximate posterior. Critically, our solution is applicable to likelihood-based, and generalized, posteriors as well as cases where the …
Helsinki Institute for Information Technology HIIT（赫尔辛基信息技术研究所 HIIT）；University of Helsinki（赫尔辛基大学）
Bayesian models quantify uncertainty and facilitate optimal decision-making in downstream applications. For most models, however, practitioners are forced to use approximate inference techniques that lead to sub-optimal decisions due to incorrect posterior predictive distributions. We present a novel approach that corrects for inaccuracies in posterior inference by altering the decision-making process. We train a separate model to make optimal decisions under the approximate posterior, combining interpretable Bayesian modeling with optimization of direct predictive accuracy in a principled fas…
On Cold Posteriors of Probabilistic Neural Networks: Understanding the Cold Posterior Effect and A New Way to Learn Cold Posteriors with Tight Generalization Guarantees
Regression models with fat-tailed error terms are an increasingly popular choice to obtain more robust inference to the presence of outlying observations. This article focuses on Bayesian inference for the Student-$t$ linear regression model under objective priors that are based on the Jeffreys rule. Posterior propriety results presented in Fonseca et al. (2008) are revisited and corrected. In particular, it is shown that the standard Jeffreys-rule prior precludes the existence of a proper posterior distribution.
IBM GBS France（IBM 全球商业服务法国分公司）；SAMOVAR（萨莫瓦实验室）；Telecom SudParis（巴黎南泰尔电信学院）；Institut Polytechnique de Paris（巴黎理工学院）
We deal with Bayesian generative and discriminative classifiers. Given a model distribution $p(x, y)$, with the observation $y$ and the target $x$, one computes generative classifiers by firstly considering $p(x, y)$ and then using the Bayes rule to calculate $p(x | y)$. A discriminative model is directly given by $p(x | y)$, which is used to compute discriminative classifiers. However, recent works showed that the Bayesian Maximum Posterior classifier defined from the Naive Bayes (NB) or Hidden Markov Chain (HMC), both generative models, can also match the discriminative classifier definition…
We propose a novel approach to perform approximate Bayesian inference in complex models such as Bayesian neural networks. The approach is more scalable to large data than Markov Chain Monte Carlo, it embraces more expressive models than Variational Inference, and it does not rely on adversarial training (or density ratio estimation). We adopt the recent approach of constructing two models: (1) a primary model, tasked with performing regression or classification; and (2) a secondary, expressive (e.g. implicit) model that defines an approximate posterior distribution over the parameters of the p…
In recent years, large-scale Bayesian learning draws a great deal of attention. However, in big-data era, the amount of data we face is growing much faster than our ability to deal with it. Fortunately, it is observed that large-scale datasets usually own rich internal structure and is somewhat redundant. In this paper, we attempt to simplify the Bayesian posterior via exploiting this structure. Specifically, we restrict our interest to the so-called well-clustered datasets and construct an \emph{approximate posterior} according to the clustering information. Fortunately, the clustering struct…
CISPA Helmholtz Center for Information Security（CISPA亥姆霍兹信息安全中心）；University of Oxford（牛津大学）
We propose a new method to approximate the posterior distribution of probabilistic programs by means of computing guaranteed bounds. The starting point of our work is an interval-based trace semantics for a recursive, higher-order probabilistic programming language with continuous distributions. Taking the form of (super-/subadditive) measures, these lower/upper bounds are non-stochastic and provably correct: using the semantics, we prove that the actual posterior of a given program is sandwiched between the lower and upper bounds (soundness); moreover the bounds converge to the posterior (com…
