Bayesian and other likelihood-based methods require specification of a statistical model and may not be fully satisfactory for inference on quantities, such as quantiles, that are not naturally defined as model parameters. In this paper, we construct a direct and model-free Gibbs posterior distribution for multivariate quantiles. Being model-free means that inferences drawn from the Gibbs posterior are not subject to model misspecification bias, and being direct means that no priors for or marginalization over nuisance parameters are required. We show here that the Gibbs posterior enjoys a root-$n$ convergence rate and a Bernstein--von Mises property, i.e., for large n, the Gibbs posterior distribution can be approximated by a Gaussian. Moreover, we present numerical results showing the validity and efficiency of credible sets derived from a suitably scaled Gibbs posterior.
Quantile regression is a powerful data analysis tool that accommodates heterogeneous covariate-response relationships. We find that by coupling the asymmetric Laplace working likelihood with appropriate shrinkage priors, we can deliver posterior inference that automatically adapts to possible sparsity in quantile regression analysis. After a suitable adjustment on the posterior variance, the posterior inference provides asymptotically valid inference under heterogeneity. Furthermore, the proposed approach leads to oracle asymptotic efficiency for the active (nonzero) quantile regression coeffi…
The asymmetric Laplace density (ALD) is used as a working likelihood for Bayesian quantile regression. Sriram et al.(2013) derived posterior consistency for Bayesian linear quantile regression based on the misspecified ALD. While their paper also argued for $\sqrt{n}-$consistency, Sriram and Ramamoorthi (2017) highlighted that the argument was only valid for a rate less than $\sqrt{n}$. So, the question of $\sqrt{n}-$rate has remained unaddressed, but is necessary to carry out meaningful Bayesian inference based on the ALD. In this paper, we derive results to obtain posterior consistency rates…
IIt is known that a statistically significant treatment may not be clinically significant. A quantity that can be used to assess clinical significance is called the minimum clinically important difference (MCID), and inference on the MCID is an important and challenging problem. Modeling for the purpose of inference on the MCID is non-trivial, and concerns about bias from a misspecified parametric model or inefficiency from a nonparametric model motivate an alternative approach to balance robustness and efficiency. In particular, a recently proposed representation of the MCID as the minimizer …
The class of Cressie-Read empirical likelihoods are constructed with weights derived at a minimum distance from the empirical distribution in the Cressie-Read family of divergences indexed by $γ$ under the constraint of an unbiased set of $M$-estimating equations. At first order, they provide valid posterior probability statements for any given prior, but the bias in coverage of the resulting empirical quantile is inversely proportional to the asymptotic efficiency of the corresponding $M$-estimator. The Cressie-Read empirical likelihoods based on the maximum likelihood estimating equations br…
Use of continuous shrinkage priors -- with a "spike" near zero and heavy-tails towards infinity -- is an increasingly popular approach to induce sparsity in parameter estimates. When the parameters are only weakly identified by the likelihood, however, the posterior may end up with tails as heavy as the prior, jeopardizing robustness of inference. A natural solution is to "shrink the shoulders" of a shrinkage prior by lightening up its tails beyond a reasonable parameter range, yielding a regularized version of the prior. We develop a regularization approach which, unlike previous proposals, p…
In this paper we consider a Bayesian framework for making inferences about dynamical systems from ergodic observations. The proposed Bayesian procedure is based on the Gibbs posterior, a decision theoretic generalization of standard Bayesian inference. We place a prior over a model class consisting of a parametrized family of Gibbs measures on a mixing shift of finite type. This model class generalizes (hidden) Markov chain models by allowing for long range dependencies, including Markov chains of arbitrarily large orders. We characterize the asymptotic behavior of the Gibbs posterior distribu…
In mathematical finance, Levy processes are widely used for their ability to model both continuous variation and abrupt, discontinuous jumps. These jumps are practically relevant, so reliable inference on the feature that controls jump frequencies and magnitudes, namely, the Levy density, is of critical importance. A specific obstacle to carrying out model-based (e.g., Bayesian) inference in such problems is that, for general Levy processes, the likelihood is intractable. To overcome this obstacle, here we adopt a Gibbs posterior framework that updates a prior distribution using a suitable los…
The Horseshoe is a widely used and popular continuous shrinkage prior for high-dimensional Bayesian linear regression. Recently, regularized versions of the Horseshoe prior have also been introduced in the literature. Various Gibbs sampling Markov chains have been developed in the literature to generate approximate samples from the corresponding intractable posterior densities. Establishing geometric ergodicity of these Markov chains provides crucial technical justification for the accuracy of asymptotic standard errors for Markov chain based estimates of posterior quantities. In this paper, w…
The PAC-Bayesian approach is a powerful set of techniques to derive non- asymptotic risk bounds for random estimators. The corresponding optimal distribution of estimators, usually called the Gibbs posterior, is unfortunately intractable. One may sample from it using Markov chain Monte Carlo, but this is often too slow for big datasets. We consider instead variational approximations of the Gibbs posterior, which are fast to compute. We undertake a general study of the properties of such approximations. Our main finding is that such a variational approximation has often the same rate of converg…
In this paper, we consider Bayesian inference on a class of multivariate median and the multivariate quantile functionals of a joint distribution using a Dirichlet process prior. Since, unlike univariate quantiles, the exact posterior distribution of multivariate median and multivariate quantiles are not obtainable explicitly, we study these distributions asymptotically. We derive a Bernstein-von Mises theorem for the multivariate $\ell_1$-median with respect to general $\ell_p$-norm, which in particular shows that its posterior concentrates around its true value at $n^{-1/2}$-rate and its cre…
Pólya trees fix partitions and use random probabilities in order to construct random probability measures. With quantile pyramids we instead fix probabilities and use random partitions. For nonparametric Bayesian inference we use a prior which supports piecewise linear quantile functions, based on the need to work with a finite set of partitions, yet we show that the limiting version of the prior exists. We also discuss and investigate an alternative model based on the so-called substitute likelihood. Both approaches factorize in a convenient way leading to relatively straightforward analysis …
Real-world problems, often couched as machine learning applications, involve quantities of interest that have real-world meaning, independent of any statistical model. To avoid potential model misspecification bias or over-complicating the problem formulation, a direct, model-free approach is desired. The traditional Bayesian framework relies on a model for the data-generating process so, apparently, the desired direct, model-free, posterior-probabilistic inference is out of reach. Fortunately, likelihood functions are not the only means of linking data and quantities of interest. Loss functio…
Detection of an image boundary when the pixel intensities are measured with noise is an important problem in image segmentation, with numerous applications in medical imaging and engineering. From a statistical point of view, the challenge is that likelihood-based methods require modeling the pixel intensities inside and outside the image boundary, even though these are typically of no practical interest. Since misspecification of the pixel intensity models can negatively affect inference on the image boundary, it would be desirable to avoid this modeling step altogether. Towards this, we deve…
PAC-Bayesian algorithms and Gibbs posteriors are gaining popularity due to their robustness against model misspecification even when Bayesian inference is inconsistent. The PAC-Bayesian alpha-posterior is a generalization of the standard Bayes posterior which can be tempered with a parameter alpha to handle inconsistency. Data driven methods for tuning alpha have been proposed but are still few, and are often computationally heavy. Additionally, the adequacy of these methods in cases where we use variational approximations instead of exact alpha-posteriors is not clear. This narrows their usag…
In the popular approach of "Bayesian variable selection" (BVS), one uses prior and posterior distributions to select a subset of candidate variables to enter the model. A completely new direction will be considered here to study BVS with a Gibbs posterior originating in statistical mechanics. The Gibbs posterior is constructed from a risk function of practical interest (such as the classification error) and aims at minimizing a risk function without modeling the data probabilistically. This can improve the performance over the usual Bayesian approach, which depends on a probability model which…
Recently, the Wasserstein loss function has been proven to be effective when applied to deterministic full-waveform inversion (FWI) problems. We consider the application of this loss function in Bayesian FWI so that the uncertainty can be captured in the solution. Other loss functions that are commonly used in practice are also considered for comparison. Existence and stability of the resulting Gibbs posteriors are shown on function space under weak assumptions on the prior and model. In particular, the distribution arising from the Wasserstein loss is shown to be quite stable with respect to …
In this article, we consider Markov chain Monte Carlo(MCMC) algorithms for exploring the intractable posterior density associated with Bayesian probit linear mixed models under improper priors on the regression coefficients and variance components. In particular, we construct the two-block Gibbs sampler using the data augmentation (DA) techniques. Furthermore, we prove geometric ergodicity of the Gibbs sampler, which is the foundation for building central limit theorems for MCMC based estimators and subsequent inferences. The conditions for geometric convergence are similar to those guaranteei…
This paper extends the idea of decoupling shrinkage and sparsity for continuous priors to Bayesian Quantile Regression (BQR). The procedure follows two steps: In the first step, we shrink the quantile regression posterior through state of the art continuous priors and in the second step, we sparsify the posterior through an efficient variant of the adaptive lasso, the signal adaptive variable selection (SAVS) algorithm. We propose a new variant of the SAVS which automates the choice of penalisation through quantile specific loss-functions that are valid in high dimensions. We show in large sca…
In this work we discuss the progress of Bayesian quantile regression models since their first proposal and we discuss the importance of all parameters involved in the inference process. Using a representation of the asymmetric Laplace distribution as a mixture of a normal and an exponential distribution, we discuss the relevance of the presence of a scale parameter to control for the variance in the model. Besides that we consider the posterior distribution of the latent variable present in the mixture representation to showcase outlying observations given the Bayesian quantile regression fits…
The current standard Bayesian approach to model calibration, which assigns a Gaussian process prior to the discrepancy term, often suffers from issues of unidentifiability and computational complexity and instability. When the goal is to quantify uncertainty in physical parameters for extrapolative prediction, then there is no need to perform inference on the discrepancy term. With this in mind, we introduce Gibbs posteriors as an alternative Bayesian method for model calibration, which updates the prior with a loss function connecting the data to the parameter. The target of inference is the …
We consider a Bayesian hierarchical version of the normal theory general linear model which is practically relevant in the sense that it is general enough to have many applications and it is not straightforward to sample directly from the corresponding posterior distribution. Thus we study a block Gibbs sampler that has the posterior as its invariant distribution. In particular, we establish that the Gibbs sampler converges at a geometric rate. This allows us to establish conditions for a central limit theorem for the ergodic averages used to estimate features of the posterior. Geometric ergod…
The Gibbs reference posterior distribution provides an objective full-Bayesian solution to the problem of prediction of a stationary Gaussian process with Matérn anisotropic kernel. A full-Bayesian approach is possible, because the posterior distribution is expressed as the invariant distribution of a uniformly ergodic Markovian kernel for which we give an explicit expression. In this paper, we show that it is appropriate for the Universal Kriging framework, that is when an unknown function is added to the stationary Gaussian process. We give sufficient conditions for the existence and proprie…
Duke University（杜克大学）；George Mason University（乔治梅森大学）
In this work, we adopt a general framework based on the Gibbs posterior to update belief distributions for inverse problems governed by partial differential equations (PDEs). The Gibbs posterior formulation is a generalization of standard Bayesian inference that only relies on a loss function connecting the unknown parameters to the data. It is particularly useful when the true data generating mechanism (or noise distribution) is unknown or difficult to specify. The Gibbs posterior coincides with Bayesian updating when a true likelihood function is known and the loss function corresponds to th…
Bayesian analysis of data from the general linear mixed model is challenging because any nontrivial prior leads to an intractable posterior density. However, if a conditionally conjugate prior density is adopted, then there is a simple Gibbs sampler that can be employed to explore the posterior density. A popular default among the conditionally conjugate priors is an improper prior that takes a product form with a flat prior on the regression parameter, and so-called power priors on each of the variance components. In this paper, a convergence rate analysis of the corresponding Gibbs sampler i…
The Bayesian probit regression model (Albert and Chib (1993)) is popular and widely used for binary regression. While the improper flat prior for the regression coefficients is an appropriate choice in the absence of any prior information, a proper normal prior is desirable when prior information is available or in modern high dimensional settings where the number of coefficients ($p$) is greater than the sample size ($n$). For both choices of priors, the resulting posterior density is intractable and a Data Dugmentation (DA) Markov chain is used to generate approximate samples from the poster…
Reversible jump Markov chain Monte Carlo (RJMCMC) extends ordinary MCMC methods for use in Bayesian multimodel inference. We show that RJMCMC can be implemented as Gibbs sampling with alternating updates of a model indicator and a vector-valued "palette" of parameters denoted $\bm ψ$. Like an artist uses the palette to mix dabs of color for specific needs, we create model-specific parameters from the set available in $\bm ψ$. This description not only removes some of the mystery of RJMCMC, but also provides a basis for fitting models one at a time using ordinary MCMC and computing model weight…
A Bayesian nonparametric approach to the study of species diversity based on choosing a random discrete distribution as a prior model for the unknown relative abundances of species has been recently introduced in Lijoi et al. (2007, 2008). Explicit posterior predictive estimation of {\it species richness} has been obtained under priors belonging to the $α$-Gibbs class (Gnedin & Pitman, 2006). Here we focus on posterior estimation of {\it species evenness} which accounts for diversity in terms of the proximity to the situation of uniform distribution of the population into different species. We…
In this article, we develop a semiparametric Bayesian estimation and model selection approach for partially linear additive models in conditional quantile regression. The asymmetric Laplace distribution provides a mechanism for Bayesian inferences of quantile regression models based on the check loss. The advantage of this new method is that nonlinear, linear and zero function components can be separated automatically and simultaneously during model fitting without the need of pre-specification or parameter tuning. This is achieved by spike-and-slab priors using two sets of indicator variables…
The area under the receiver operating characteristic curve (AUC) serves as a summary of a binary classifier's performance. Methods for estimating the AUC have been developed under a binormality assumption which restricts the distribution of the score produced by the classifier. However, this assumption introduces an infinite-dimensional nuisance parameter and can be inappropriate, especially in the context of machine learning. This motivates us to adopt a model-free Gibbs posterior distribution for the AUC. We present the asymptotic Gibbs posterior concentration rate, and a strategy for tuning…
In this article, we consider a non-parametric Bayesian approach to multivariate quantile regression. The collection of related conditional distributions of a response vector Y given a univariate covariate X is modeled using a Dependent Dirichlet Process (DDP) prior. The DDP is used to introduce dependence across x. As the realizations from a Dirichlet process prior are almost surely discrete, we need to convolve it with a kernel. To model the error distribution as flexibly as possible, we use a countable mixture of multidimensional normal distributions as our kernel. For posterior computations…
Youden's index cutoff is a classifier mapping a patient's diagnostic test outcome and available covariate information to a diagnostic category. Typically the cutoff is estimated indirectly by first modeling the conditional distributions of test outcomes given diagnosis and then choosing the optimal cutoff for the estimated distributions. Here we present a Gibbs posterior distribution for direct inference on the cutoff. Our approach makes incorporating prior information about the cutoff much easier compared to existing methods, and does so without specifying probability models for the data, whi…
The logistic regression model is the most popular model for analyzing binary data. In the absence of any prior information, an improper flat prior is often used for the regression coefficients in Bayesian logistic regression models. The resulting intractable posterior density can be explored by running Polson et al.'s (2013) data augmentation (DA) algorithm. In this paper, we establish that the Markov chain underlying Polson et al.'s (2013) DA algorithm is geometrically ergodic. Proving this theoretical result is practically important as it ensures the existence of central limit theorems (CLTs…
The Bayesian lasso is well-known as a Bayesian alternative for Lasso. Although the advantage of the Bayesian lasso is capable of full probabilistic uncertain quantification for parameters, the corresponding posterior distribution can be sensitive to outliers. To overcome such problem, robust Bayesian regression models have been proposed in recent years. In this paper, we consider the robust and efficient estimation for the Bayesian Huberized lasso regression in fully Bayesian perspective. A new posterior computation algorithm for the Bayesian Huberized lasso regression is proposed. The propose…
Approximate Bayesian Computation (ABC) is a method to obtain a posterior distribution without a likelihood function, using simulations and a set of distance metrics. For that reason, it has recently been gaining popularity as an analysis tool in cosmology and astrophysics. Its drawback, however, is a slow convergence rate. We propose a novel method, which we call qABC, to accelerate ABC with Quantile Regression. In this method, we create a model of quantiles of distance measure as a function of input parameters. This model is trained on a small number of simulations and estimates which regions…
Bayesian simultaneous estimation of nonparametric quantile curves is a challenging problem, requiring a flexible and robust data model whilst satisfying the monotonicity or noncrossing constraints on the quantiles. This paper presents the use of the pyramid quantile regression method in the spline regression setting. In high dimensional problems, the choice of the pyramid locations becomes crucial for a robust parameter estimation. In this work we derive the optimal {pyramid locations which then allows us to propose an efficient} adaptive block-update MCMC scheme for posterior computation. Sim…
This article develops a Bayesian approach for estimating panel quantile regression with binary outcomes in the presence of correlated random effects. We construct a working likelihood using an asymmetric Laplace (AL) error distribution and combine it with suitable prior distributions to obtain the complete joint posterior distribution. For posterior inference, we propose two Markov chain Monte Carlo (MCMC) algorithms but prefer the algorithm that exploits the blocking procedure to produce lower autocorrelation in the MCMC draws. We also explain how to use the MCMC draws to calculate the margin…
In this study, we present a multi-class graphical Bayesian predictive classifier that incorporates the uncertainty in the model selection into the standard Bayesian formalism. For each class, the dependence structure underlying the observed features is represented by a set of decomposable Gaussian graphical models. Emphasis is then placed on the Bayesian model averaging which takes full account of the class-specific model uncertainty by averaging over the posterior graph model probabilities. An explicit evaluation of the model probabilities is well known to be infeasible. To address this issue…
In statistical practice, a realistic Bayesian model for a given data set can be defined by a likelihood function that is analytically or computationally intractable, due to large data sample size, high parameter dimensionality, or complex likelihood functional form. This in turn poses challenges to the computation and inference of the posterior distribution of the model parameters. For such a model, a tractable likelihood function is introduced which approximates the exact likelihood through its quantile function. It is defined by an asymptotic chi-square confidence distribution for a pivotal …
The logistic linear mixed model (LLMM) is one of the most widely used statistical models. Generally, Markov chain Monte Carlo algorithms are used to explore the posterior densities associated with the Bayesian LLMMs. Polson, Scott and Windle's (2013) Polya-Gamma data augmentation (DA) technique can be used to construct full Gibbs (FG) samplers for the LLMMs. Here, we develop efficient block Gibbs (BG) samplers for Bayesian LLMMs using the Polya-Gamma DA method. We compare the FG and BG samplers in the context of a real data example, as the correlation between the fixed effects and the random e…
Bayesian inference provides a flexible way of combining data with prior information. However, quantile regression is not equipped with a parametric likelihood, and therefore, Bayesian inference for quantile regression demands careful investigation. This paper considers the Bayesian empirical likelihood approach to quantile regression. Taking the empirical likelihood into a Bayesian framework, we show that the resultant posterior from any fixed prior is asymptotically normal; its mean shrinks toward the true parameter values, and its variance approaches that of the maximum empirical likelihood …
