We study general aspects of active motion with fluctuations in the speed and the direction of motion in two dimensions. We consider the case in which fluctuations in the speed are not correlated to fluctuations in the direction of motion, and assume that both processes can be described by independent characteristic time-scales. We show the occurrence of a complex transient that can exhibit a series of alternating regimes of motion, for two different angular dynamics which correspond to persistent and directed random walks. We also show additive corrections to the diffusion coefficient. The characteristic time-scales are also exposed in the velocity autocorrelation, which is a sum of exponential forms.
Examples of self propulsion in strongly fluctuating environment is abound in nature, e.g., molecular motors and pumps operating in living cells. Starting from Langevin equation of motion, we develop a fluctuating thermodynamic description of self propelled particles using simple models of velocity dependent forces. We derive fluctuation theorems for entropy production and a modified fluctuation dissipation relation, characterizing the linear response at non-equilibrium steady states. We study these notions in a simple model of molecular motors, and in the Rayleigh-Helmholtz and energy-depot mo…
Understanding the organization of collective motion in biological systems is an ongoing challenge. In this Paper we consider a minimal model of self-propelled particles with variable speed. Inspired by experimental data from schooling fish, we introduce a power-law dependency of the speed of each particle on the degree of polarization order in its neighborhood. We derive analytically a coarse-grained continuous approximation for this model and find that, while the variable speed rule does not change the details of the ordering transition leading to collective motion, it induces an inverse powe…
We study a collection of polar self-propelled particles confined to a long two-dimensional channel. We write the coupled hydrodynamic equations of motion for density and polarisation order parameter. At two confined boundaries, density is fixed to the mean and orientation is anti-parallel with fixed magnitude of polarisation. Such boundary conditions make our system similar to a sheared suspension of self-propelled particles, which has many practical applications. Antiparallel alignment at the two confined boundaries and alignment inside the channel create rolls of orientation along the long a…
We propose a geometric perspective to describe the motion of self-propelled particles moving at constant speed in d dimensions. We exploit the fact that the vector that conveys the direction of motion of the particle performs a random walk on a $(d-1)$-dimensional manifold. We show that the particle performs isotropic diffusion in d-dimensions if the manifold corresponds to a hypersphere. In contrast, we find that the self-propelled particle exhibits anisotropic diffusion if this manifold corresponds to a deformed hypersphere (e.g. an ellipsoid). This simple approach provides an unified framew…
Recently, the Brownian dynamics of self-propelled (active) rod-like particles was explored to model the motion of colloidal microswimmers, catalytically-driven nanorods, and bacteria. Here, we generalize this description to biaxial particles with arbitrary shape and derive the corresponding Langevin equation for a self-propelled Brownian spinning top. The biaxial swimmer is exposed to a hydrodynamic Stokes friction force at low Reynolds numbers, to fluctuating random forces and torques as well as to an external and an internal (effective) force and torque. The latter quantities control its sel…
We study the behaviour of interacting self-propelled particles, whose self-propulsion speed decreases with their local density. By combining direct simulations of the microscopic model with an analysis of the hydrodynamic equations obtained by explicitly coarse graining the model, we show that interactions lead generically to the formation of a host of patterns, including moving clumps, active lanes and asters. This general mechanism could explain many of the patterns seen in recent experiments and simulations.
The growth of actin filament networks is a fundamental biological process that drives a variety of cellular and intracellular motions. During motility, eukaryotic cells and intracellular pathogens are propelled by actin networks organized by nucleation-promoting factors, which trigger the formation of nascent filaments off the side of existing filaments in the network. A Brownian ratchet (BR) mechanism has been proposed to couple actin polymerization to cellular movements, whereby thermal motions are rectified by the addition of actin monomers at the end of growing filaments. Here, by followin…
We study the velocity distribution of unicellular swimming algae Euglena gracilis using optical microscopy and theory. To characterize a peculiar feature of the experimentally observed distribution at small velocities we use the concept of active fluctuations, which was recently proposed for the description of stochastically self-propelled particles [Romanczuk, P. and Schimansky-Geier, L., Phys. Rev. Lett. 106, 230601 (2011)]. In this concept, the fluctuating forces arise due to internal random performance of the propulsive motor. The fluctuating forces are directed in parallel to the heading …
Active particles (i.e., self-propelled particles or called microswimmers), different from passive Brownian particles, possess more complicated translational and angular dynamics, which can generate a series of anomalous transport phenomena. In this letter, we study the two-dimensional dynamics of a self-propelled pointlike particle with self-aligning property moving in Poiseuille flow. The results show the effective anomalous diffusion coefficient changes sharply with the change of temperature and speed of background Poiseuille flow. The relaxation property of moving speed and the position pro…
We study a system of self-propelled particles (SPPs) in which individual particles are allowed to switch between a fast aligning and a slow nonaligning state depending upon the degree of the alignment in the neighborhood. The switching is modeled using a threshold for the local order parameter. This additional attribute gives rise to a mixed phase, in contrast to the ordered phases found in clean SPP systems. As the threshold is increased from zero, we find the sudden appearance of clusters of nonaligners. Clusters of nonaligners coexist with moving clusters of aligners with continual coalesce…
We study collections of self-propelled rods (SPR) moving in two dimensions for packing fractions less than or equal to 0.3. We find that in the thermodynamical limit the SPR undergo a phase transition between a disordered gas and a novel phase-separated system state. Interestingly, (global) orientational order patterns -- contrary to what has been suggested -- vanish in this limit. In the found novel state, the SPR self-organize into a highly dynamical, high-density, compact region - which we call aggregate - which is surrounded by a disordered gas. Active stresses build inside aggregates as r…
We study a system of self-propelled disks that perform run-and-tumble motion, where particles can adopt more than one internal state. One of those internal states can be transmitted to another particle if the particle carrying this state maintains physical contact with another particle for a finite period of time. We refer to this process as a reaction process and to the different internal states as particle species making an analogy to chemical reactions. The studied system may fall into an absorbing phase, where due to the disappearance of one of the particle species no further reaction can …
Active diffusiophoresis - swimming through interaction with a self-generated, neutral, solute gradient - is a paradigm for autonomous motion at the micrometer scale. We study this propulsion mechanism within a linear response theory. Firstly, we consider several aspects relating to the dynamics of the swimming particle. We extend established analytical formulae to describe small swimmers, which interact with their environment on a finite lengthscale. Solute convection is also taken into account. Modeling of the chemical reaction reveals a coupling between the angular distribution of reactivity…
Individual movements of a rod-like self-propelled particle on a flat substrate are quantified. Biological systems that fit into this description may be the Gram-negative delta-proteobacterium Myxococcus xanthus, Gram-negative bacterium Escherichia coli, and Mitochondria. There are also non-living analogues such as vibrated polar granulates and self-driven anisotropic colloidal particles. For that we study the Brownian motion of an asymmetric rod-like rigid particle self-propelled at a fixed speed along its long axis in two dimensions. The motion of such a particle in a uniform external potenti…
The diffusion properties of self-propelled particles which move at constant speed and, in addition, reverse their direction of motion repeatedly are investigated. The internal dynamics of particles triggering these reversal processes is modeled by a stochastic clock. The velocity correlation function as well as the mean squared displacement is investigated and, furthermore, a general expression for the diffusion coefficient for self-propelled particles with directional reversal is derived. Our analysis reveals the existence of an optimal, finite rotational noise amplitude which maximizes the d…
We are concerned with the dynamical description of the motion of a stochastic micro-swimmer with constant speed and fluctuating orientation in the long time limit by adiabatic elimination of the orientational variable. Starting with the corresponding full set of Langevin equations, we eliminate the memory in the stochastic orientation and obtain a stochastic equation for the position alone in the overdamped limit. An equivalent procedure based on the Fokker-Planck equation is presented as well.
An active colloid is a suspension of particles that transduce free energy from their environment and use the energy to engage in intrinsically non-equilibrium activities such as growth, replication and self-propelled motility. An obvious example of active colloids is a suspension of bacteria such as Escherichia coli, their physical dimensions being almost invariably in the colloidal range. Synthetic self-propelled particles have also become available recently, such as two-faced, or Janus, particles propelled by differential chemical reactions on their surfaces driving a self-phoretic motion. I…
When particles move at a constant speed and have the tendency to align their directions of motion, ordered large scale movement can emerge despite significant levels of noise. Many variants of this model of self-propelled particles have been studied to explain the coherent motion of groups of birds, fish or microbes. Here, we generalize the exactly aligning collision rule of the classical model of self-propelled particles to the case where particles after the collision tend to move in slightly different directions away from each other, as characterized by a collision angle $α$. We map out the …
While a rich variety of self-propelled particle models propose to explain the collective motion of fish and other animals, rigorous statistical comparison between models and data remains a challenge. Plausible models should be flexible enough to capture changes in the collective behaviour of animal groups at their different developmental stages and group sizes. Here we analyse the statistical properties of schooling fish (Pseudomugil signifer) through a combination of experiments and simulations. We make novel use of a Boltzmann inversion method, usually applied in molecular dynamics, to ident…
Self-propelled swimmers such as bacteria agglomerate into clusters as a result of their persistent motion. In 1D, those clusters do not coalesce macroscopically and the stationary cluster size distribution (CSD) takes an exponential form. We develop a minimal lattice model for active particles in narrow channels to study how clustering is affected by the interplay between self-propulsion speed diversity and confinement. A mixture of run-and-tumble particles with a distribution of self-propulsion speeds is simulated in 1D. Particles can swap positions at rates proportional to their relative sel…
Elastic active matter or active solid consists of self-propelled units embedded in an elastic matrix. Active solid resists deformation; the shape-preserving property and the intrinsic non-equilibrium nature make active solids a superior component for self-driven devices. Nonetheless, the mechanical properties and emergent behavior of active solids are poorly understood. Using a biofilm-based bacterial active solid, here we discovered self-sustained elastic waves with unique wave properties not seen in passive solids, such as power-law scaling of wave speed with activity. Under isotropic confin…
In a system of noisy self-propelled particles with interactions that favor directional alignment, collective motion will appear if the density of particles increases beyond a certain threshold. In this paper, we argue that such a threshold may depend also on the profiles of the perturbation in the particle directions. Specifically, we perform mean-field, linear stability, perturbative and numerical analyses on an approximated form of the Fokker-Planck equation describing the system. We find that if an angular perturbation to an initially homogeneous system is large in magnitude and highly loca…
Self-propelled colloidal objects, such as motile bacteria or synthetic microswimmers, have microscopically irreversible individual dynamics - a feature they share with all living systems. The incoherent behaviour of individual swimmers can then be harnessed (or "rectified") by microfluidic devices that create systematic motions impossible in equilibrium. Examples include flow of rotor particles round a circuit, steady rotation of a gear wheel in a bacterial bath, and pumping of bacteria between chambers by "funnel gates". Here we present a computational proof-of-concept study, showing that suc…
