We introduce a notion of intrinsic linking and knotting for virtual spatial graphs. Our theory gives two filtrations of the set of all graphs, allowing us to measure, in a sense, how intrinsically linked or knotted a graph is; we show that these filtrations are descending and non-terminating. We also provide several examples of intrinsically virtually linked and knotted graphs. As a byproduct, we introduce the {\it virtual unknotting number} of a knot, and show that any knot with non-trivial Jones polynomial has virtual unknotting number at least 2.
We prove that a graph is intrinsically linked in an arbitrary 3-manifold M if and only if it is intrinsically linked in S^3. Also, assuming the Poincare Conjecture, we prove that a graph is intrinsically knotted in M if and only if it is intrinsically knotted in S^3.
A directed graph $G$ is $\textit{intrinsically linked}$ if every embedding of that graph contains a non-split link $L$, where each component of $L$ is a consistently oriented cycle in $G$. A $\textit{tournament}$ is a directed graph where each pair of vertices is connected by exactly one directed edge. We consider intrinsic linking and knotting in tournaments, and study the minimum number of vertices required for a tournament to have various intrinsic linking or knotting properties. We produce the following bounds: intrinsically linked ($n=8$), intrinsically knotted ($9 \leq n \leq 12$), intri…
We introduce new sufficient conditions for intrinsic knotting and linking. A graph on n vertices with at least 4n-9 edges is intrinsically linked. A graph on n vertices with at least 5n-14 edges is intrinsically knotted. We also classify graphs that are 0, 1, or 2 edges short of being complete partite graphs with respect to intrinsic linking and intrinsic knotting. In addition, we classify intrinsic knotting of graphs on 8 vertices.
We show that, given any $n$ and $α$, every embedding of any sufficiently large complete graph in $\mathbb{R}^3$ contains an oriented link with components $Q_1$, ..., $Q_n$ such that for every $i\not =j$, $|\lk(Q_i,Q_j)|\geqα$ and $|a_2(Q_i)|\geqα$, where $a_{2}(Q_i)$ denotes the second coefficient of the Conway polynomial of $Q_i$.
This paper focuses on the graphs in the Petersen family, the set of minor minimal intrinsically linked graphs. We prove there is a relationship between algebraic linking of an embedding and knotting in an embedding. We also present a more explicit relationship for the graph $K_{3,3,1}$ between knotting and linking, which relates the sum of the squares of linking numbers of links in the embedding and the second coefficient of the Conway polynomial of particular cycles in the embedding.
We classify graphs that are 0, 1, or 2 edges short of being complete partite graphs with respect to intrinsic linking and intrinsic knotting. In addition, we classify intrinsic knotting of graphs on 8 vertices. For graphs in these families, we verify a conjecture presented in Adams' "The Knot Book": If a vertex is removed from an intrinsically knotted graph, one obtains an intrinsically linked graph.
We show that for every m in N, there exists an n in N such that every embedding of the complete graph K_n in R^3 contains a link of two components whose linking number is at least m. Furthermore, there exists an r in N such that every embedding of K_r in R^3 contains a knot Q with |a_2(Q)| > m-1, where a_2(Q) denotes the second coefficient of the Conway polynomial of Q.
Fleming and Foisy recently proved the existence of a digraph whose every embedding contains a $4$-component link, and left open the possibility that a directed graph with an intrinsic $n$-component link might exist. We show that, indeed, this is the case. In fact, much as Flapan, Mellor, and Naimi show for graphs, knotting and linking are arbitrarily complex in directed graphs. Specifically, we prove the analog for digraphs of the main theorem of their paper: for any $n$ and $α$, every embedding of a sufficiently large complete digraph in $\mathbb{R}^3$ contains an oriented link with component…
We probe the character of knotting in open, confined polymers, assigning knot types to open curves by identifying their projections as virtual knots. In this sense, virtual knots are transitional, lying in between classical knot types, which are useful to classify the ambiguous nature of knotting in open curves. Modelling confined polymers using both lattice walks and ideal chains, we find an ensemble of random, tangled open curves whose knotting is not dominated by any single knot type, a behaviour we call weakly knotted. We compare cubically confined lattice walks and spherically confined id…
Long, flexible physical filaments are naturally tangled and knotted, from macroscopic string down to long-chain molecules. The existence of knotting in a filament naturally affects its configuration and properties, and may be very stable or disappear rapidly under manipulation and interaction. Knotting has been previously identified in protein backbone chains, for which these mechanical constraints are of fundamental importance to their molecular functionality, despite their being open curves in which the knots are not mathematically well defined; knotting can only be identified by closing the…
In 1983, Conway and Gordon proved that for every spatial complete graph on six vertices, the sum of the linking numbers over all of the constituent two-component links is odd, and that for every spatial complete graph on seven vertices, the sum of the Arf invariants over all of the Hamiltonian knots is odd. In 2009, the second author gave integral lifts of the Conway-Gordon theorems in terms of the square of the linking number and the second coefficient of the Conway polynomial. In this paper, we generalize the integral Conway-Gordon theorems to complete graphs with arbitrary number of vertice…
This article presents a survey of some recent results in the theory of spatial graphs. In particular, we highlight results related to intrinsic knotting and linking and results about symmetries of spatial graphs. In both cases we consider spatial graphs in $S^3$ as well as in other $3$-manifolds.
We present four models for a random graph and show that, in each case, the probability that a graph is intrinsically knotted goes to one as the number of vertices increases. We also argue that, for $k \geq 18$, most graphs of order $k$ are intrinsically knotted and, for $k \geq 2n+9$, most of order $k$ are not $n$-apex. We observe that $p(n) = 1/n$ is the threshold for intrinsic knotting and linking in Gilbert's model.
We consider intrinsic linking and knotting in the context of directed graphs. We construct an example of a directed graph that contains a consistently oriented knotted cycle in every embedding. We also construct examples of intrinsically 3-linked and 4-linked directed graphs. We introduce two operations, consistent edge contraction and H-cyclic subcontraction, as special cases of minors for digraphs, and show that the property of having a linkless embedding is closed under these operations. We analyze the relationship between the number of distinct knots and links in an undirected graph $G$ an…
Oikawa defined an unknotting operation on virtual knots, called a CF-move, and gave a classification of 2-component virtual links up to CF-moves by the virtual linking number and his $n$-invariant. In particular, it was proved that a CF-move characterizes the information contained in the virtual linking number for 2-component odd virtual links. In this paper, we extend this result by classifying odd virtual links and almost odd virtual links with arbitrary number of components up to CF-moves, using the virtual linking number. Moreover, we extend Oikawa's $n$-invariant and introduce two invaria…
This paper gives an alternate definition of the Affine Index Polynomial (called the Wriggle Polynomial) using virtual linking numbers and explores applications of this polynomial. In particular, it proves the Cosmetic Crossing Change Conjecture for odd virtual knots and pure virtual knots. It also demonstrates that the polynomial can detect mutations by positive rotation and proves it cannot detect mutations by positive reflection. Finally it exhibits a pair of mutant knots that can be distinguished by a Type 2 Vassiliev Invariant coming from the polynomial.
We introduce a quandle invariant of classical and virtual links, denoted $Q_{tc} (L)$. This quandle has the property that $Q_{tc} (L) \cong Q_{tc} (L')$ if and only if the components of $L$ and $L'$ can be indexed in such a way that $L=K_1 \cup \dots \cup K_μ$, $L'=K'_1 \cup \dots \cup K'_μ$ and for each index $i$, there is a multiplier $ε_i \in \{-1,1\}$ that connects virtual linking numbers over $K_i$ in $L$ to virtual linking numbers over $K'_i$ in $L'$: $\ell_{j/i}(K_i,K_j)= ε_i \ell_{j/i}(K'_i,K'_j)$ for all $j \neq i$. We also extend to virtual links a classical theorem of Chen, which re…
In this paper we introduce a new invariant of virtual knots and links that is non-trivial for infinitely many virtuals, but is trivial on classical knots and links. The invariant is initially be expressed in terms of a relative of the bracket polynomial and then extracted from this polynomial in terms of its exponents, particularly for the case of knots. This analog of the bracket polynomial will be denoted {K} (with curly brackets) and called the binary bracket polynomial. The key to the combinatorics of the invariant is an interpretation of the state sum in terms of 2-colorings of the associ…
