The increased quantity of data has led to a soaring use of networks to model relationships between different objects, represented as nodes. Since the number of nodes can be particularly large, the network information must be summarised through node clustering methods. In order to make the results interpretable, a relevant visualisation of the network is also required. To tackle both issues, we propose a new methodology called deep latent position block model (Deep LPBM) which simultaneously provides a network visualisation coherent with block modelling, allowing a clustering more general than community detection methods, as well as a continuous representation of nodes in a latent space given by partial membership vectors. Our methodology is based on a variational autoencoder strategy, relying on a graph convolutional network, with a specifically designed decoder. The inference is done using both variational and stochastic approximations. In order to efficiently select the number of clusters, we provide a comparison of three model selection criteria. An extensive benchmark as well as an evaluation of the partial memberships are provided. We conclude with an analysis of a French political blogosphere network and a comparison with another methodology to illustrate the insights provided by Deep LPBM results.
Center for Modern Statistics, School of Mathematics, Northwest University（西北大学数学学院现代统计中心）
Spectral clustering has been one of the widely used methods for community detection in networks. However, large-scale networks bring computational challenges to the eigenvalue decomposition therein. In this paper, we study the spectral clustering using randomized sketching algorithms from a statistical perspective, where we typically assume the network data are generated from a stochastic block model that is not necessarily of full rank. To do this, we first use the recently developed sketching algorithms to obtain two randomized spectral clustering algorithms, namely, the random projection-ba…
Analysis of the topology of a graph, regular or bipartite one, can be done by clustering for regular ones or co-clustering for bipartite ones. The Stochastic Block Model and the Latent Block Model are two models, which are very similar for respectively regular and bipartite graphs, based on probabilistic models. Initially developed for binary graphs, these models have been extended to valued networks with optional covariates on the edges. This paper present a implementation of a Variational EM algorithm for Stochastic Block Model and Latent Block Model for some common probability functions, Be…
In this paper we address the problem of modeling relational data, which appear in many applications such as social network analysis, recommender systems and bioinformatics. Previous studies either consider latent feature based models but disregarding local structure in the network, or focus exclusively on capturing local structure of objects based on latent blockmodels without coupling with latent characteristics of objects. To combine the benefits of the previous work, we propose a novel model that can simultaneously incorporate the effect of latent features and covariates if any, as well as …
School of Computer Science, Fudan University（复旦大学计算机科学学院）；University of Technology, Sydney（悉尼科技大学）
Reconstruction based subspace clustering methods compute a self reconstruction matrix over the samples and use it for spectral clustering to obtain the final clustering result. Their success largely relies on the assumption that the underlying subspaces are independent, which, however, does not always hold in the applications with increasing number of subspaces. In this paper, we propose a novel reconstruction based subspace clustering model without making the subspace independence assumption. In our model, certain properties of the reconstruction matrix are explicitly characterized using the …
The paper exposes a non-parametric approach to latent and co-latent modeling of bivariate data, based upon alternating minimization of the Kullback-Leibler divergence (EM algorithm) for complete log-linear models. For categorical data, the iterative algorithm generates a soft clustering of both rows and columns of the contingency table. Well-known results are systematically revisited, and some variants are presumably original. In particular, the consideration of square contingency tables induces a clustering algorithm for weighted networks, differing from spectral clustering or modularity maxi…
A model based clustering procedure for data of mixed type, clustMD, is developed using a latent variable model. It is proposed that a latent variable, following a mixture of Gaussian distributions, generates the observed data of mixed type. The observed data may be any combination of continuous, binary, ordinal or nominal variables. clustMD employs a parsimonious covariance structure for the latent variables, leading to a suite of six clustering models that vary in complexity and provide an elegant and unified approach to clustering mixed data. An expectation maximisation (EM) algorithm is use…
Finite mixture models have become a popular tool for clustering. Amongst other uses, they have been applied for clustering longitudinal data and clustering high-dimensional data. In the latter case, a latent Gaussian mixture model is sometimes used. Although there has been much work on clustering using latent variables and on clustering longitudinal data, respectively, there has been a paucity of work that combines these features. An approach is developed for clustering longitudinal data with many time points based on an extension of the mixture of common factor analyzers model. A variation of…
In this paper we prove the strong consistency of several methods based on the spectral clustering techniques that are widely used to study the community detection problem in stochastic block models (SBMs). We show that under some weak conditions on the minimal degree, the number of communities, and the eigenvalues of the probability block matrix, the K-means algorithm applied to the eigenvectors of the graph Laplacian associated with its first few largest eigenvalues can classify all individuals into the true community uniformly correctly almost surely. Extensions to both regularized spectral …
Model-based clustering methods for continuous data are well established and commonly used in a wide range of applications. However, model-based clustering methods for categorical data are less standard. Latent class analysis is a commonly used method for model-based clustering of binary data and/or categorical data, but due to an assumed local independence structure there may not be a correspondence between the estimated latent classes and groups in the population of interest. The mixture of latent trait analyzers model extends latent class analysis by assuming a model for the categorical resp…
In cluster analysis interest lies in probabilistically capturing partitions of individuals, items or observations into groups, such that those belonging to the same group share similar attributes or relational profiles. Bayesian posterior samples for the latent allocation variables can be effectively obtained in a wide range of clustering models, including finite mixtures, infinite mixtures, hidden Markov models and block models for networks. However, due to the categorical nature of the clustering variables and the lack of scalable algorithms, summary tools that can interpret such samples are…
Motivated by high-throughput single-cell cytometry data with applications to vaccine development and immunological research, we consider statistical clustering in large-scale data that contain multiple rare clusters. We propose a new hierarchical mixture model, namely Hidden Markov Model on Variable Blocks (HMM-VB), and a new mode search algorithm called Modal Baum-Welch (MBW) for efficient clustering. Exploiting the widely accepted chain-like dependence among groups of variables in the cytometry data, we propose to treat the hierarchy of variable groups as a figurative time line and employ a …
We derive properties of Latent Variable Models for networks, a broad class of models that includes the widely-used Latent Position Models. These include the average degree distribution, clustering coefficient, average path length and degree correlations. We introduce the Gaussian Latent Position Model, and derive analytic expressions and asymptotic approximations for its network properties. We pay particular attention to one special case, the Gaussian Latent Position Models with Random Effects, and show that it can represent the heavy-tailed degree distributions, positive asymptotic clustering…
In the framework of model-based clustering, a model, called multi-partitions clustering, allowing several latent class variables has been proposed. This model assumes that the distribution of the observed data can be factorized into several independent blocks of variables, each block following its own mixture model. In this paper, we assume that each block follows a non parametric latent class model, {\it i.e.} independence of the variables in each component of the mixture with no parametric assumption on their class conditional distribution. The purpose is to deduce, from the observation of a…
This chapter investigates the latent structure of bipartite networks via a model-based clustering approach which is able to capture both latent groups of sending nodes and latent variability of the propensity of sending nodes to create links with receiving nodes within each group. This modelling approach is very flexible and can be estimated by using fast inferential approaches such as variational inference. We apply this model to the analysis of a terrorist network in order to identify the main latent groups of terrorists and their latent trait scores based on their attendance to some events.
In the framework of model-based clustering, a model allowing several latent class variables is proposed. This model assumes that the distribution of the observed data can be factorized into several independent blocks of variables. Each block is assumed to follow a latent class model ({\it i.e.,} mixture with conditional independence assumption). The proposed model includes variable selection, as a special case, and is able to cope with the mixed-data setting. The simplicity of the model allows to estimate the repartition of the variables into blocks and the mixture parameters simultaneously, t…
In this paper, we propose a general framework for combining evidence of varying quality to estimate underlying binary latent variables in the presence of restrictions imposed to respect the scientific context. The resulting algorithms cluster the multivariate binary data in a manner partly guided by prior knowledge. The primary model assumptions are that 1) subjects belong to classes defined by unobserved binary states, such as the true presence or absence of pathogens in epidemiology, or of antibodies in medicine, or the "ability" to correctly answer test questions in psychology, 2) a binary …
Social network data are relational data recorded among a group of actors, interacting in different contexts. Often, the same set of actors can be characterized by multiple social relations, captured by a multidimensional network. A common situation is that of colleagues working in the same institution, whose social interactions can be defined on professional and personal levels. In addition, individuals in a network tend to interact more frequently with similar others, naturally creating communities. Latent space models for network data are useful to recover clustering of the actors, as they a…
Mixed membership community detection is a challenge problem in network analysis. To estimate the memberships and study the impact of regularized spectral clustering under the mixed membership stochastic block (MMSB) model, this article proposes two efficient spectral clustering approaches based on regularized Laplacian matrix, Simplex Regularized Spectral Clustering (SRSC) and Cone Regularized Spectral Clustering (CRSC). SRSC and CRSC methods are designed based on the ideal simplex structure and the ideal cone structure in the variants of the eigen-decomposition of the population regularized L…
We consider a discrete latent variable model for two-way data arrays, which allows one to simultaneously produce clusters along one of the data dimensions (e.g. exchangeable observational units or features) and contiguous groups, or segments, along the other (e.g. consecutively ordered times or locations). The model relies on a hidden Markov structure but, given its complexity, cannot be estimated by full maximum likelihood. We therefore introduce composite likelihood methodology based on considering different subsets of the data. The proposed approach is illustrated by simulation, and with an…
In the present paper, we studied a Dynamic Stochastic Block Model (DSBM) under the assumptions that the connection probabilities, as functions of time, are smooth and that at most $s$ nodes can switch their class memberships between two consecutive time points. We estimate the edge probability tensor by a kernel-type procedure and extract the group memberships of the nodes by spectral clustering. The procedure is computationally viable, adaptive to the unknown smoothness of the functional connection probabilities, to the rate $s$ of membership switching and to the unknown number of clusters. I…
The Agincourt Health and Demographic Surveillance System has since 2001 conducted a biannual household asset survey in order to quantify household socio-economic status (SES) in a rural population living in northeast South Africa. The survey contains binary, ordinal and nominal items. In the absence of income or expenditure data, the SES landscape in the study population is explored and described by clustering the households into homogeneous groups based on their asset status. A model-based approach to clustering the Agincourt households, based on latent variable models, is proposed. In the ca…
We consider the problem of identifying multiway block structure from a large noisy tensor. Such problems arise frequently in applications such as genomics, recommendation system, topic modeling, and sensor network localization. We propose a tensor block model, develop a unified least-square estimation, and obtain the theoretical accuracy guarantees for multiway clustering. The statistical convergence of the estimator is established, and we show that the associated clustering procedure achieves partition consistency. A sparse regularization is further developed for identifying important blocks …
Latent stochastic block models are flexible statistical models that are widely used in social network analysis. In recent years, efforts have been made to extend these models to temporal dynamic networks, whereby the connections between nodes are observed at a number of different times. In this paper we extend the original stochastic block model by using a Markovian property to describe the evolution of nodes' cluster memberships over time. We recast the problem of clustering the nodes of the network into a model-based context, and show that the integrated completed likelihood can be evaluated…
High-order clustering aims to identify heterogeneous substructures in multiway datasets that arise commonly in neuroimaging, genomics, social network studies, etc. The non-convex and discontinuous nature of this problem pose significant challenges in both statistics and computation. In this paper, we propose a tensor block model and the computationally efficient methods, \emph{high-order Lloyd algorithm} (HLloyd), and high-order spectral clustering (HSC), for high-order clustering. The convergence guarantees and statistical optimality are established for the proposed procedure under a mild sub…
We propose a mixture of latent trait models with common slope parameters (MCLT) for model-based clustering of high-dimensional binary data, a data type for which few established methods exist. Recent work on clustering of binary data, based on a $d$-dimensional Gaussian latent variable, is extended by incorporating common factor analyzers. Accordingly, our approach facilitates a low-dimensional visual representation of the clusters. We extend the model further by the incorporation of random block effects. The dependencies in each block are taken into account through block-specific parameters t…
