针对不完美排序集抽样下有限混合模型参数估计问题，提出结合EM算法与Metropolis within Gibbs Sampling的贝叶斯估计方法，效果优于简单随机抽样法，并应用于老年女性骨病估计。
摘要：
我们研究了从不完美排序集抽样设计产生的独立顺序统计量下有限混合模型参数的贝叶斯估计问题。作为一种成本高效的方法，排序集抽样（RSS）能够将易于获取的特征作为排序信息纳入数据收集与贝叶斯估计过程。为处理排序集样本的特殊结构，我们提出了一种贝叶斯估计方法：利用期望最大化（EM）算法估计排序参数，采用Metropolis within Gibbs Sampling估计底层混合模型的参数。研究结果表明，所提出的基于RSS的贝叶斯估计方法优于常用的简单随机抽样贝叶斯估计方法。最后，我们将该方法应用于估计50岁及以上女性的骨病状况。
英文摘要：
We consider the Bayesian estimation of the parameters of a finite mixture model from independent order statistics arising from imperfect ranked set sampling designs. As a cost-effective method, ranked set sampling enables us to incorporate easily attainable characteristics, as ranking information, into data collection and Bayesian estimation. To handle the special structure of the ranked set samples, we develop a Bayesian estimation approach exploiting the Expectation-Maximization (EM) algorithm in estimating the ranking parameters and Metropolis within Gibbs Sampling to estimate the parameters of the underlying mixture model. Our findings show that the proposed RSS-based Bayesian estimation method outperforms the commonly used Bayesian counterpart using simple random sampling. The developed method is finally applied to estimate the bone disorder status of women aged 50 and older.
The elicitation of an ordinal judgment on multiple alternatives is often required in many psychological and behavioral experiments to investigate preference/choice orientation of a specific population. The Plackett-Luce model is one of the most popular and frequently applied parametric distributions to analyze rankings of a finite set of items. The present work introduces a Bayesian finite mixture of Plackett-Luce models to account for unobserved sample heterogeneity of partially ranked data. We describe an efficient way to incorporate the latent group structure in the data augmentation approa…
This paper describes briefly how one may utilize a class of species sampling mixture models derived from Doksum's (1974) neutral to the right processes. For practical implementation we describe an ordered/ranked variant of the generalized weighted Chinese restaurant process.
Mixtures of ranking models have been widely used for heterogeneous preferences. However, learning a mixture model is highly nontrivial, especially when the dataset consists of partial orders. In such cases, the parameter of the model may not be even identifiable. In this paper, we focus on three popular structures of partial orders: ranked top-$l_1$, $l_2$-way, and choice data over a subset of alternatives. We prove that when the dataset consists of combinations of ranked top-$l_1$ and $l_2$-way (or choice data over up to $l_2$ alternatives), mixture of $k$ Plackett-Luce models is not identifi…
Heavy-tailed distributions are widely used in robust mixture modelling due to possessing thick tails. As a computationally tractable subclass of the stable distributions, sub-Gaussian $α$-stable distribution received much interest in the literature. Here, we introduce a type of expectation maximization algorithm that estimates parameters of a mixture of sub-Gaussian stable distributions. A comparative study, in the presence of some well-known mixture models, is performed to show the robustness and performance of the mixture of sub-Gaussian $α$-stable distributions for modelling, simulated, syn…
Normalized compound random measures are flexible nonparametric priors for related distributions. We consider building general nonparametric regression models using normalized compound random measure mixture models. Posterior inference is made using a novel pseudo-marginal Metropolis-Hastings sampler for normalized compound random measure mixture models. The algorithm makes use of a new general approach to the unbiased estimation of Laplace functionals of compound random measures (which includes completely random measures as a special case). The approach is illustrated on problems of density re…
The modelling of empirically observed data is commonly done using mixtures of probability distributions. In order to model angular data, directional probability distributions such as the bivariate von Mises (BVM) is typically used. The critical task involved in mixture modelling is to determine the optimal number of component probability distributions. We employ the Bayesian information-theoretic principle of minimum message length (MML) to distinguish mixture models by balancing the trade-off between the model's complexity and its goodness-of-fit to the data. We consider the problem of modell…
The estimation of asset return distributions is crucial for determining optimal trading strategies. In this paper we describe the constrained mixture model, based on a mixture of Gamma and Gaussian distributions, to provide an accurate description of price trends as being clearly positive, negative or ranging while accounting for heavy tails and high kurtosis. The model is estimated in the Expectation Maximisation framework and model order estimation also respects the model's constraints.
Mixtures of experts models provide a framework in which covariates may be included in mixture models. This is achieved by modelling the parameters of the mixture model as functions of the concomitant covariates. Given their mixture model foundation, mixtures of experts models possess a diverse range of analytic uses, from clustering observations to capturing parameter heterogeneity in cross-sectional data. This chapter focuses on delineating the mixture of experts modelling framework and demonstrates the utility and flexibility of mixtures of experts models as an analytic tool.
The distribution of single Stop Signal Reaction Times (SSRT) in the stop signal task (SST) as a measurement of the latency of the unobservable stopping process has been modeled with a nonparametric method by Hans Colonius (1990) and with a Bayesian parametric method by Eric-Jan Wagenmakers and colleagues (2012). These methods assume equal impact of the preceding trial type (go/stop) in the SST trials on the SSRT distributional estimation without addressing the case of the violated assumption. This study presents the required model by considering two-state mixture model for the SSRT distributio…
In this paper, we introduce and evaluate a data-driven staged mixture modeling technique for building density, regression, and classification models. Our basic approach is to sequentially add components to a finite mixture model using the structural expectation maximization (SEM) algorithm. We show that our technique is qualitatively similar to boosting. This correspondence is a natural byproduct of the fact that we use the SEM algorithm to sequentially fit the mixture model. Finally, in our experimental evaluation, we demonstrate the effectiveness of our approach on a variety of prediction an…
Ranked data arise in many areas of application ranging from the ranking of up-regulated genes for cancer to the ranking of academic statistics journals. Complications can arise when rankers do not report a full ranking of all entities; for example, they might only report their top--$M$ ranked entities after seeing some or all entities. It can also be useful to know whether rankers are equally informative, and whether some entities are effectively judged to be exchangeable. When there is important subgroup structure in the data, summaries such as aggregate (overall) rankings can be misleading. …
Consider a set of categorical variables where at least one of them is binary. The log-linear model that describes the counts in the resulting contingency table implies a specific logistic regression model, with the binary variable as the outcome. Within the Bayesian framework, the $g$-prior and mixtures of $g$-priors are commonly assigned to the parameters of a generalized linear model. We prove that assigning a $g$-prior (or a mixture of $g$-priors) to the parameters of a certain log-linear model designates a $g$-prior (or a mixture of $g$-priors) on the parameters of the corresponding logist…
University of Potsdam（波茨坦大学）；École Nationale de la Statistique et de l’administration économique（国家统计与经济管理学院）；CNRS（法国国家科学研究中心）；Université Paris-Dauphine（巴黎九大）；PSL Research University（巴黎文理研究大学）
We present a case-study demonstrating the usefulness of Bayesian hierarchical mixture modelling for investigating cognitive processes. In sentence comprehension, it is widely assumed that the distance between linguistic co-dependents affects the latency of dependency resolution: the longer the distance, the longer the retrieval time (the distance-based account). An alternative theory, direct-access, assumes that retrieval times are a mixture of two distributions: one distribution represents successful retrievals (these are independent of dependency distance) and the other represents an initial…
Exponential families are the workhorses of parametric modelling theory. One reason for their popularity is their associated inference theory, which is very clean, both from a theoretical and a computational point of view. One way in which this set of tools can be enriched in a natural and interpretable way is through mixing. This paper develops and applies the idea of local mixture modelling to exponential families. It shows that the highly interpretable and flexible models which result have enough structure to retain the attractive inferential properties of exponential families. In particular…
In this article, we present the maximum weighted likelihood estimator (MWLE) for robust estimations of heavy-tail finite mixture models (FMM). This is motivated by the complex distributional phenomena of insurance claim severity data, where flexible density estimation tools such as FMM are needed but MLE often produces unstable tail estimates under FMM. Under some regularity conditions, MWLE is proved to be consistent and asymptotically normal. We further prove that the tail index obtained by MWLE is consistent even if the model is misspecified, justifying the robustness of MWLE in estimating …
Next-generation sequencing technologies now constitute a method of choice to measure gene expression. Data to analyze are read counts, commonly modeled using Negative Binomial distributions. A relevant issue associated with this probabilistic framework is the reliable estimation of the overdispersion parameter, reinforced by the limited number of replicates generally observable for each gene. Many strategies have been proposed to estimate this parameter, but when differential analysis is the purpose, they often result in procedures based on plug-in estimates, and we show here that this discrep…
This paper is concerned with an important issue in finite mixture modelling, the selection of the number of mixing components. We propose a new penalized likelihood method for model selection of finite multivariate Gaussian mixture models. The proposed method is shown to be statistically consistent in determining of the number of components. A modified EM algorithm is developed to simultaneously select the number of components and to estimate the mixing weights, i.e. the mixing probabilities, and unknown parameters of Gaussian distributions. Simulations and a real data analysis are presented t…
Mixed-species growth models are needed as a synthesis of ecological knowledge and for guiding forest management. Individual-tree models have been commonly used, but the difficulties of reliably scaling from the individual to the stand level are often underestimated. Emergent properties and statistical issues limit their effectiveness. A more holistic modelling of aggregates at the whole stand level is a potentially attractive alternative. This work explores methodology for developing biologically consistent dynamic mixture models where the state is described by aggregate stand-level variables …
Mixture models are probabilistic models aimed at uncovering and representing latent subgroups within a population. In the realm of network data analysis, the latent subgroups of nodes are typically identified by their connectivity behaviour, with nodes behaving similarly belonging to the same community. In this context, mixture modelling is pursued through stochastic blockmodelling. We consider stochastic blockmodels and some of their variants and extensions from a mixture modelling perspective. We also survey some of the main classes of estimation methods available, and propose an alternative…
This paper focuses on modelling surrender time for policyholders in the context of life insurance. In this setup, a large lapse rate at the first months of a contract is often observed, with a decrease in this rate after some months. The modelling of the time to cancellation must account for this specific behaviour. Another stylised fact is that policies which are not cancelled in the study period are considered censored. To account for both censuring and heterogeneous lapse rates, this work assumes a Bayesian survival model with a mixture of regressions. The inference is based on data augment…
Mixture models are one of the most widely used statistical tools when dealing with data from heterogeneous populations. This paper considers the long-standing debate over finite mixture and infinite mixtures and brings the two modelling strategies together, by showing that a finite mixture is simply a realization of a point process. Following a Bayesian nonparametric perspective, we introduce a new class of prior: the Normalized Independent Point Processes. We investigate the probabilistic properties of this new class. Moreover, we design a conditional algorithm for finite mixture models with …
Most Item Response Theory (IRT) models for dichotomous responses are based on probit or logit link functions which assume a symmetric relationship between the probability of a correct response and the latent traits of individuals submitted to a test. This assumption restricts the use of those models to the case in which all items have a symmetric behaviour. On the other hand, asymmetric models proposed in the literature impose that all the items in a test have an asymmetric behaviour. This assumption is inappropriate for great part of the tests which are, in general, composed by both symmetric…
Mixture modelling involves explaining some observed evidence using a combination of probability distributions. The crux of the problem is the inference of an optimal number of mixture components and their corresponding parameters. This paper discusses unsupervised learning of mixture models using the Bayesian Minimum Message Length (MML) criterion. To demonstrate the effectiveness of search and inference of mixture parameters using the proposed approach, we select two key probability distributions, each handling fundamentally different types of data: the multivariate Gaussian distribution to a…
University of Washington（华盛顿大学）；Massachusetts Institute of Technology（麻省理工学院）
We present a Dirichlet process mixture model over discrete incomplete rankings and study two Gibbs sampling inference techniques for estimating posterior clusterings. The first approach uses a slice sampling subcomponent for estimating cluster parameters. The second approach marginalizes out several cluster parameters by taking advantage of approximations to the conditional posteriors. We empirically demonstrate (1) the effectiveness of this approximation for improving convergence, (2) the benefits of the Dirichlet process model over alternative clustering techniques for ranked data, and (3) t…
Mixture models have been around for over 150 years, as an intuitively simple and practical tool for enriching the collection of probability distributions available for modelling data. In this chapter we describe the basic ideas of the subject, present several alternative representations and perspectives on these models, and discuss some of the elements of inference about the unknowns in the models. Our focus is on the simplest set-up, of finite mixture models, but we discuss also how various simplifying assumptions can be relaxed to generate the rich landscape of modelling and inference ideas …
We propose a new framework for the modelling of count data exhibiting zero inflation (ZI). The main part of this framework includes a new and more general parameterisation for ZI models which naturally includes both over- and under-inflation. It further sheds new theoretical light on modelling and inference and permits a simpler alternative, which we term as multiplicative, in contrast to the dominant mixture and hurdle models. Our approach gives the statistician access to new types of ZI of which mixture and hurdle are special cases. We outline a simple parameterised modelling approach which …
We propose a general nonparametric Bayesian framework for binary regression, which is built from modeling for the joint response-covariate distribution. The observed binary responses are assumed to arise from underlying continuous random variables through discretization, and we model the joint distribution of these latent responses and the covariates using a Dirichlet process mixture of multivariate normals. We show that the kernel of the induced mixture model for the observed data is identifiable upon a restriction on the latent variables. To allow for appropriate dependence structure while f…
Rapidly estimating the remaining wall thickness (RWT) is paramount for the non-destructive condition assessment evaluation of large critical metallic pipelines. A robotic vehicle with embedded magnetism-based sensors has been developed to traverse the inside of a pipeline and conduct inspections at the location of a break. However its sensing speed is constrained by the magnetic principle of operation, thus slowing down the overall operation in seeking dense RWT mapping. To ameliorate this drawback, this work proposes the partial scanning of the pipe and then employing Gaussian Processes (GPs)…
In the univariate setting, using the kernel spectral representation is an appealing approach for generating stationary covariance functions. However, performing the same task for multiple-output Gaussian processes is substantially more challenging. We demonstrate that current approaches to modelling cross-covariances with a spectral mixture kernel possess a critical blind spot. For a given pair of processes, the cross-covariance is not reproducible across the full range of permitted correlations, aside from the special case where their spectral densities are of identical shape. We present a so…
The trimming scheme with a prefixed cutoff portion is known as a method of improving the robustness of statistical models such as multivariate Gaussian mixture models (MG- MMs) in small scale tests by alleviating the impacts of outliers. However, when this method is applied to real- world data, such as noisy speech processing, it is hard to know the optimal cut-off portion to remove the outliers and sometimes removes useful data samples as well. In this paper, we propose a new method based on measuring the dispersion degree (DD) of the training data to avoid this problem, so as to realise auto…
The modelling of data on a spherical surface requires the consideration of directional probability distributions. To model asymmetrically distributed data on a three-dimensional sphere, Kent distributions are often used. The moment estimates of the parameters are typically used in modelling tasks involving Kent distributions. However, these lack a rigorous statistical treatment. The focus of the paper is to introduce a Bayesian estimation of the parameters of the Kent distribution which has not been carried out in the literature, partly because of its complex mathematical form. We employ the B…
Mixtures of factor analyzers (MFA) provide a powerful tool for modelling high-dimensional datasets. In recent years, several generalizations of MFA have been developed where the normality assumption of the factors and/or of the errors was relaxed to allow for skewness in the data. However, due to the form of the adopted component densities, the distribution of the factors/errors in most of these models is typically limited to modelling skewness oncentrated in a single direction. Here, we introduce a more flexible finite mixture of factor analyzers based on the class of scale mixtures of canoni…
This paper exploits a simplified version of the mixture of multivariate t-factor analyzers (MtFA) for robust mixture modelling and clustering of high-dimensional data that frequently contain a number of outliers. Two classes of eight parsimonious t mixture models are introduced and computation of maximum likelihood estimates of parameters is achieved using the alternating expectation conditional maximization (AECM) algorithm. The usefulness of the methodology is illustrated through applications of image compression and compact facial representation.
The complete part of the earthquake frequency-magnitude distribution (FMD), above completeness magnitude mc, is well described by the Gutenberg-Richter law. The parameter mc however varies in space due to the seismic network configuration, yielding a convoluted FMD shape below max(mc). This paper investigates the shape of the generalized FMD (GFMD), which may be described as a mixture of elemental FMDs (eFMDs) defined as asymmetric Laplace distributions of mode mc [Mignan, 2012, https://doi.org/10.1029/2012JB009347]. An asymmetric Laplace mixture model (GFMD- ALMM) is thus proposed with its pa…
Because of its mathematical tractability, the Gaussian mixture model holds a special place in the literature for clustering and classification. For all its benefits, however, the Gaussian mixture model poses problems when the data is skewed or contains outliers. Because of this, methods have been developed over the years for handling skewed data, and fall into two general categories. The first is to consider a mixture of more flexible skewed distributions, and the second is based on incorporating a transformation to near normality. Although these methods have been compared in their respective …
Modelling spatio-temporal processes has become an important issue in current research. Since Gaussian processes are essentially determined by their second order structure, broad classes of covariance functions are of interest. Here, a new class is described that merges and generalizes various models presented in the literature, in particular models in Gneiting (J. Amer. Statist. Assoc. 97 (2002) 590--600) and Stein (Nonstationary spatial covariance functions (2005) Univ. Chicago). Furthermore, new models and a multivariate extension are introduced.
Ecologists often interpret variation in the spatial distribution of populations in terms of responses to environmental features, but disentangling the effects of individual variables can be difficult if latent effects and spatial and temporal correlations are not accounted for properly. Here, we use hierarchical models based on a Poisson log-normal mixture to understand the spatial variation in relative abundance (counts per standardized unit of effort) of yellow perch, Perca flavescens, the most abundant fish species in Lake Saint Pierre, Quebec, Canada. The mixture incorporates spatially var…
University of Exeter（埃克塞特大学）；The Cyprus Institute（塞浦路斯研究所）；University of Glasgow（格拉斯哥大学）；Met Office（英国气象局）
As the costs of sensors and associated IT infrastructure decreases - as exemplified by the Internet of Things - increasing volumes of observational data are becoming available for use by environmental scientists. However, as the number of available observation sites increases, so too does the opportunity for data quality issues to emerge, particularly given that many of these sensors do not have the benefit of official maintenance teams. To realise the value of crowd sourced 'Internet of Things' type observations for environmental modelling, we require approaches that can automate the detectio…
We propose a new procedure for clustering nucleotide sequences based on the "Laplacian Eigenmaps" and Gaussian Mixture modelling. This proposal is then applied to a set of 100 DNA sequences from the mitochondrially encoded NADH dehydrogenase 3 (ND3) gene of a collection of Platyhelminthes and Nematoda species. The resulting clusters are then shown to be consistent with the gene phylogenetic tree computed using a maximum likelihood approach. This comparison shows in particular that the clustering produced by the methodology combining Laplacian Eigenmaps with Gaussian Mixture models is coherent …
We propose the use of probability models for ranked data as a useful alternative to a quantitative data analysis to investigate the outcome of bioassay experiments, when the preliminary choice of an appropriate normalization method for the raw numerical responses is difficult or subject to criticism. We review standard distance-based and multistage ranking models and in this last context we propose an original generalization of the Plackett-Luce model to account for the order of the ranking elicitation process. The usefulness of the novel model is illustrated with its maximum likelihood estima…
University of Pretoria（比勒陀利亚大学）；Center for Artificial Intelligence Research (CAIR)（人工智能研究中心（CAIR））
Most topic models are constructed under the assumption that documents follow a multinomial distribution. The Poisson distribution is an alternative distribution to describe the probability of count data. For topic modelling, the Poisson distribution describes the number of occurrences of a word in documents of fixed length. The Poisson distribution has been successfully applied in text classification, but its application to topic modelling is not well documented, specifically in the context of a generative probabilistic model. Furthermore, the few Poisson topic models in literature are admixtu…
Continuous mixtures of Gaussian processes as models for spatial extremes
Université de Montpellier（蒙彼利埃大学）；Inria（法国国家信息与自动化研究所）；Université Côte d’Azur（蔚蓝海岸大学）；Università Ca’ Foscari di Venezia（威尼斯卡福斯卡里大学）；INRAE（法国国家农业、食品与环境研究院）
In recent work, robust mixture modelling approaches using skewed distributions have been explored to accommodate asymmetric data. We introduce parsimony by developing skew-t and skew-normal analogues of the popular GPCM family that employ an eigenvalue decomposition of a positive-semidefinite matrix. The methods developed in this paper are compared to existing models in both an unsupervised and semi-supervised classification framework. Parameter estimation is carried out using the expectation-maximization algorithm and models are selected using the Bayesian information criterion. The efficacy …
Characterizing the wind speed distribution properly is essential for the satisfactory production of potential energy in wind farms, being the mixture models usually employed in the description of such data. However, some mixture models commonly have the undesirable property of non-identifiability. In this work, we present an alternative distribution which is able to fit the wind speed data adequately. The new model, called Normal-Weibull-Weibull, is identifiable and its cumulative distribution function is written as a composition of two baseline functions. We discuss structural properties of t…
In this paper we propose a deep recurrent architecture for the probabilistic modelling of high-frequency market prices, important for the risk management of automated trading systems. Our proposed architecture incorporates probabilistic mixture models into deep recurrent neural networks. The resulting deep mixture models simultaneously address several practical challenges important in the development of automated high-frequency trading strategies that were previously neglected in the literature: 1) probabilistic forecasting of the price movements; 2) single objective prediction of both the dir…
Estimating probabilistic deformable template models is a new approach in the fields of computer vision and probabilistic atlases in computational anatomy. A first coherent statistical framework modelling the variability as a hidden random variable has been given by Allassonnière, Amit and Trouvé in [1] in simple and mixture of deformable template models. A consistent stochastic algorithm has been introduced in [2] to face the problem encountered in [1] for the convergence of the estimation algorithm for the one component model in the presence of noise. We propose here to go on in this directio…
Discrete mixture models are one of the most successful approaches for density estimation. Under a Bayesian nonparametric framework, Dirichlet process location-scale mixture of Gaussian kernels is the golden standard, both having nice theoretical properties and computational tractability. In this paper we explore the use of the skew-normal kernel, which can naturally accommodate several degrees of skewness by the use of a third parameter. The choice of this kernel function allows us to formulate nonparametric location-scale-shape mixture prior with large support and good performance in differen…
Analyses of high-throughput genomic data often lead to ranked lists of genomic loci. How to characterize concordant signals between two rank lists is a common problem with many applications. One example is measuring the reproducibility between two replicate experiments. Another is to characterize the interaction and co-binding between two transcription factors (TF) based on the overlap between their binding sites. As an exploratory tool, the simple Venn diagram approach can be used to show the common loci between two lists. However, this approach does not account for changes in overlap with de…
Detection heterogeneity is inherent to ecological data, arising from factors such as varied terrain or weather conditions, inconsistent sampling effort, or heterogeneity of individuals themselves. Incorporating additional covariates into a statistical model is one approach for addressing heterogeneity, but is no guarantee that any set of measurable covariates will adequately address the heterogeneity, and the presence of unmodelled heterogeneity has been shown to produce biases in the resulting inferences. Other approaches for addressing heterogeneity include the use of random effects, or fini…
