To study the interplay of jamming, cluster formation, and motility-induced phase separation in the zero temperature limit in two dimensions, we consider a simple model system consisting of a bidisperse mixture of disks that are only subject to a repulsion force in case of overlaps and an active force. The orientation of the disks is chosen randomly in the beginning and does not change anytime during the simulation thus corresponding to an infinite persistence length. Simulations with our model system reveal that jammed clusters of particles occur in the dense phase of a phase-separated state in case of intermediate values of the ratio of active to repulsive force. However, for smaller activities there are only a few overlaps between the particles in the dense phase and the coexistence region ends at a packing fraction below the onset of jamming. Finally, for large activities small clusters corresponding to small patches of the dense phase are found that are unstable due to the activity. Our findings on how jamming and phase separation are related are relevant to many active particle systems whose zero temperature and long persistence limits correspond to our model system.
The ability of cells to move through small spaces depends on the mechanical properties of the cellular cytoskeleton and on nuclear deformability. In mammalian cells, the cytoskeleton is comprised of three interacting, semi-flexible polymer networks: actin, microtubules, and intermediate filaments (IF). Recent experiments of mouse embryonic fibroblasts with and without vimentin have shown that the IF vimentin plays a role in confined cell motility. We, therefore, develop a minimal model of cells moving through confined geometries that effectively includes all three types of cytoskeletal filamen…
We present an experimental realization of the collective trapping phase transition [Kaiser et al., PRL 108, 268307 (2012)], using motile polar granular rods in the presence of a V-shaped obstacle. We offer a theory of this transition based on the interplay of motility-induced condensation and liquid-crystalline ordering and show that trapping occurs when persistent influx overcomes the collective expulsion of smectic defect structures. In agreement with the theory, our experiments find that a trap fills to the brim when the trap angle $θ$ is below a threshold $θ_c$, while all particles escape …
We use coarse-grained molecular dynamics simulations to study the motility of a 2D vesicle containing self-propelled rods, as a function of the vesicle bending rigidity and the number density, length, and activity of the enclosed rods. Above a threshold value of the rod length, distinct dynamical regimes emerge, including a dramatic enhancement of vesicle motility characterized by a highly persistent random walk. These regimes are determined by clustering of the rods within the vesicle; the maximum motility state arises when there is one long-lived polar cluster. We develop a scaling theory th…
In nature, objects which are in thermal contact with each other, usually approach the same temperature, unless a heat source (or sink) cherishes a persistent flow of heat. Accordingly, in a well-isolated apartment flat, most items are at a similar temperature. This is a general consequence of equilibrium thermodynamics, requiring coexisting phases to have identical temperatures. Opposing this generic situation, here we identify a system showing different temperatures in coexisting phases, which are separated from each other by a sharp and persistent temperature gradient. Thermodynamically, suc…
The persistent motion of bacteria produces clusters with a stationary cluster size distribution (CSD). Here we develop a minimal model for bacteria in a narrow channel to assess the relative importance of motility diversity (i.e. polydispersity in motility parameters) and confinement. A mixture of run-and-tumble particles with a distribution of tumbling rates (denoted generically by $α$) is considered on a 1D lattice. Particles facing each other cross at constant rate, rendering the lattice quasi-1D. To isolate the role of diversity, the global average $α$ stays fixed. For a binary mixture wit…
Active matter physics has been developed with various types of self-propelled particles, including those with polar and bipolar motility and beyond. However, the bipolar motions experimentally realized so far have been either random along the axis or periodic at intrinsic frequencies. Here we report another kind of bipolar active particles, whose periodic bipolar self-propulsion is set externally at a controllable frequency. We used Quincke rollers -- dielectric particles suspended in a conducting liquid driven by an electric field -- under an AC electric field instead of the usually used DC f…
The collective behaviour of confluent cell sheets is strongly influenced both by polar forces, arising through cytoskeletal propulsion and by active inter-cellular forces, which are mediated by interactions across cell-cell junctions. We use a phase-field model to explore the interplay between these two contributions and compare the dynamics of a cell sheet when the polarity of the cells aligns to (i) their main axis of elongation, (ii) their velocity, and (iii) when the polarity direction executes a persistent random walk.In all three cases, we observe a sharp transition from a jammed state (…
Mixtures of active and passive particles are predicted to exhibit a variety of nonequilibrium phases. Here we report a dynamic clustering phase in mixtures of colloids and motile bacteria. We show that colloidal clustering results from a balance between bond breaking due to persistent active motion and bond stabilization due to torques that align active particle velocity tangentially to the passive particle surface. Furthermore, dynamic clustering spans a broad regime between diffusivity-based and motility-induced phase separation that subsumes typical bacterial motility parameters.
Meso-scale turbulence was originally observed experimentally in various suspensions of swimming bacteria, as well as in the collective motion of active colloids. The corresponding large-scale dynamical patterns were reproduced in a simple model of a polar fluid, assuming a constant density of active particles. Recent, more detailed experimental studies revealed additional interesting aspects, such as anomalous velocity statistics and clustering phenomena. Those phenomena cannot be explained by currently available models for active polar fluids. Herein, we extend the continuum model suggested b…
Off-lattice active Brownian particles form clusters and undergo phase separation even in the absence of attractions or velocity-alignment mechanisms. Arguments that explain this phenomenon appeal only to the ability of particles to move persistently in a direction that fluctuates, but existing lattice models of hard particles that account for this behavior do not exhibit phase separation. Here we present a lattice model of active matter that exhibits motility-induced phase separation in the absence of velocity alignment. Using direct and rare-event sampling of dynamical trajectories we show th…
Self-propelled swimmers such as bacteria agglomerate into clusters as a result of their persistent motion. In 1D, those clusters do not coalesce macroscopically and the stationary cluster size distribution (CSD) takes an exponential form. We develop a minimal lattice model for active particles in narrow channels to study how clustering is affected by the interplay between self-propulsion speed diversity and confinement. A mixture of run-and-tumble particles with a distribution of self-propulsion speeds is simulated in 1D. Particles can swap positions at rates proportional to their relative sel…
Epithelial cell monolayers show remarkable displacement and velocity correlations over distances of ten or more cell sizes that are reminiscent of supercooled liquids and active nematics. We show that many observed features can be described within the framework of dense active matter, and argue that persistent uncoordinated cell motility coupled to the collective elastic modes of the cell sheet is sufficient to produce swirl-like correlations. We obtain this result using both continuum active linear elasticity and a normal modes formalism, and validate analytical predictions with numerical sim…
Modeling the dynamics of an individual active particle invariably involves an isotropic noisy self-propulsion component, in the form of run-and-tumble motion or variations around it. This nonequilibrium source of noise is neither white---there is persistence---nor Gaussian. While emerging collective behavior in active matter has hitherto been attributed to the persistent ingredient, we focus on the non-Gaussian ingredient of self-propulsion. We show that by itself, that is without invoking any memory effect, it is able to generate particle accumulation close to boundaries and effective attract…
Programming active-molecule dynamics via intramolecular nonreciprocity
Key Laboratory of Artificial Micro- and Nano-structures of Ministry of Education（教育部人工微纳结构重点实验室）；School of Physics and Technology, Wuhan University（武汉大学物理科学与技术学院）；Wuhan Institute of Quantum Technology（武汉量子技术研究院）
Active colloids exhibit persistent motion, which can lead to motility-induced phase separation (MIPS). However, there currently exists no microscopic theory to account for this phenomenon. We report a first-principles theory, free of fit parameters, for active spherical colloids, which shows explicitly how an effective many-body interaction potential is generated by activity and how this can rationalize MIPS. For a passively repulsive system the theory predicts phase separation and pair correlations in quantitative agreement with simulation. For an attractive system the theory shows that phase…
We study non-equilibrium phases for interacting two-dimensional self-propelled particles with isotropic pair-wise interactions using a persistent kinetic Monte Carlo (MC) approach. We establish the quantitative phase diagram, including the motility-induced phase separation (MIPS) that is a commonly observed collective phenomena in active matter. In addition, we demonstrate for several different potential forms the presence of two-step melting, with an intermediate hexatic phase, in regions far from equilibrium. Increased activity can melt a two-dimensional solid and the melting lines remain di…
We study the dynamics of a self-propelled particle advected by a steady laminar flow. The persistent motion of the self-propelled particle is described by an active Ornstein-Uhlenbeck process. We focus on the diffusivity properties of the particle as a function of persistence time and free-diffusion coefficient, revealing non-monotonic behaviors, with the occurrence of a minimum and steep growth in the regime of large persistence time. In the latter limit, we obtain an analytical prediction for the scaling of the diffusion coefficient with the parameters of the active force. Our study sheds li…
We study the collective dynamics of groups of whirligig beetles Dineutus discolor (Coleoptera: Gyrinidae) swimming freely on the surface of water. We extract individual trajectories for each beetle, including positions and orientations, and use this to discover (i) a density dependent speed scaling like $v\simρ^{-ν}$ with $ν\approx0.4$ over two orders of magnitude in density (ii) an inertial delay for velocity alignment of $\sim 13$ ms and (iii) coexisting high and low density phases, consistent with motility induced phase separation (MIPS). We modify a standard active brownian particle (ABP) …
Molecular-motor generated active stresses drive the cytoskeleton away from equilibrium, endowing it with tunable mechanical properties that are essential for diverse functions such as cell division and motility[1-5]. Designing analogous biomimetic systems is a key prerequisite for creating active matter that can emulate cellular functions[6-7]. These long-term goals requires understanding of how motor-generated stresses tune the mechanics of filamentous networks[8-11]. In microtubule-based active matter, kinesin motors generate extensile motion that leads to persistent breaking and reforming o…
