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arXiv 2205.08166cs.CVcs.LG

CellTypeGraph: A New Geometric Computer Vision Benchmark

Heidelberg University(海德堡大学);Max Planck Institute for Plant Breeding Research(马克斯·普朗克植物育种研究所);Technical University of Munich(慕尼黑工业大学)

Lorenzo Cerrone, Athul Vijayan, Tejasvinee Mody, Kay Schneitz, Fred A. Hamprecht

英文摘要:

Classifying all cells in an organ is a relevant and difficult problem from plant developmental biology. We here abstract the problem into a new benchmark for node classification in a geo-referenced graph. Solving it requires learning the spatial layout of the organ including symmetries. To allow the convenient testing of new geometrical learning methods, the benchmark of Arabidopsis thaliana ovules is made available as a PyTorch data loader, along with a large number of precomputed features. Finally, we benchmark eight recent graph neural network architectures, finding that DeeperGCN currently works best on this problem.

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