On the increase of major depressive disorders (MDD), many researchers paid attention to their recognition and treatment. Existing MDD recognition algorithms always use a single time-frequency domain method method, but the single time-frequency domain method is too simple and is not conducive to simulating the complex link relationship between brain functions. To solve this problem, this paper proposes a recognition method based on multi-layer brain functional connectivity networks (MBFCN) for major depressive disorder and conducts cognitive analysis. Cognitive analysis based on the proposed MBFCN finds that the Alpha-Beta1 frequency band is the key sub-band for recognizing MDD. The connections between the right prefrontal lobe and the temporal lobe of the extremely depressed disorders (EDD) are deficient in the brain functional connectivity networks (BFCN) based on phase lag index (PLI). Furthermore, potential biomarkers by the significance analysis of depression features and PHQ-9 can be found.
Background: Real-time functional magnetic resonance imaging neurofeedback (rtfMRI-nf) has proven to be a powerful technique to help subjects to gauge and enhance emotional control. Traditionally, rtfMRI-nf has focused on emotional regulation through self-regulation of amygdala. Recently, rtfMRI studies have observed that regulation of a target brain region is accompanied by connectivity changes beyond the target region. Therefore, the aim of present study is to investigate the use of connectivity between amygdala and prefrontal regions as the target of neurofeedback training in healthy individ…
Emerging evidence showed that major depressive disorder (MDD) is associated with disruptions of brain structural and functional networks, rather than impairment of isolated brain region. Thus, connectome-based models capable of predicting the depression severity at the individual level can be clinically useful. Here, we applied a machine-learning approach to predict the severity of depression using resting-state networks derived from source-reconstructed Electroencephalography (EEG) signals. Using regression models and three independent EEG datasets (N=328), we tested whether resting state fun…
Graph Autoencoders for Embedding Learning in Brain Networks and Major Depressive Disorder Identification
Monash University Malaysia（莫纳什大学马来西亚校区）；Vanderbilt University Medical Center（范德比尔特大学医学中心）；King Abdullah University of Science and Technology（阿卜杜拉国王科技大学）
Southwest University（西南大学）；Collaborative Innovation Center of Assessment Toward Basic Education Quality at Beijing Normal University（北京师范大学基础教育质量评价协同创新中心）
Major depressive disorder (MDD) is one of the most common mental health conditions that has been intensively investigated for its association with brain atrophy and mortality. Recent studies reveal that the deviation between the predicted and the chronological age can be a marker of accelerated brain aging to characterize MDD. However, current conclusions are usually drawn based on structural MRI information collected from Caucasian participants. The universality of this biomarker needs to be further validated by subjects with different ethnic/racial backgrounds and by different types of data.…
Cognitive states are involving in our daily life, which motivates us to explore them and understand them by a vast variety of perspectives. Among these perspectives, brain connectivity is increasingly receiving attention in recent years. It is the right time to summarize the past achievements, serving as a cornerstone for the upcoming progress in the field. In this chapter, the definition of the cognitive state is first given and the cognitive states that are frequently investigated are then outlined. The introduction of the methods for estimating connectivity strength and graph theoretical me…
In cognitive network neuroscience, the connectivity and community structure of the brain network is related to cognition. Much of this research has focused on two measures of connectivity - modularity and flexibility - which frequently have been examined in isolation. By using resting state fMRI data from 52 young adults, we investigate the relationship between modularity, flexibility and performance on cognitive tasks. We show that flexibility and modularity are highly negatively correlated. However, we also demonstrate that flexibility and modularity make unique contributions to explain task…
The present review presents multiple techniques in which ocular assessments may serve as a noninvasive approach for the early diagnoses of various cognitive and psychiatric disorders, such as Alzheimer's disease (AD), autism spectrum disorder (ASD), schizophrenia (SZ), and major depressive disorder (MDD). Real-time ocular responses are tightly associated with emotional and cognitive processing within the central nervous system. Patterns seen in saccades, pupillary responses, and blinking, as well as retinal microvasculature and morphology visualized via office-based ophthalmic imaging, are pot…
By focusing on melancholic features with biological homogeneity, this study aimed to identify a small number of critical functional connections (FCs) that were specific only to the melancholic type of MDD. On the resting-state fMRI data, classifiers were developed to differentiate MDD patients from healthy controls (HCs). The classification accuracy was improved from 50 % (93 MDD and 93 HCs) to 70% (66 melancholic MDD and 66 HCs), when we specifically focused on the melancholic MDD with moderate or severer level of depressive symptoms. It showed 65% accuracy for the independent validation coho…
Functional connectivity, as estimated using resting state fMRI, has shown potential in bridging the gap between pathophysiology and cognition. However, clinical use of functional connectivity biomarkers is impeded by unreliable estimates of individual functional connectomes and lack of generalizability of models predicting cognitive outcomes from connectivity. To address these issues, we combine the frameworks of connectome predictive modeling and differential identifiability. Using the combined framework, we show that enhancing the individual fingerprint of resting state functional connectome…
Non-linear associations of amyloid-$β$ with resting-state functional networks and their cognitive relevance in a large community-based cohort of cognitively normal older adults
Simultaneous real-time fMRI and EEG neurofeedback (rtfMRI-EEG-nf) is an emerging neuromodulation approach, that enables simultaneous volitional regulation of both hemodynamic (BOLD fMRI) and electrophysiological (EEG) brain activities. Here we report the first application of rtfMRI-EEG-nf for emotion self-regulation training in patients with major depressive disorder (MDD). In this proof-of-concept study, MDD patients in the experimental group (n=16) used rtfMRI-EEG-nf during a happy emotion induction task to simultaneously upregulate two fMRI and two EEG activity measures relevant to MDD. The…
Neurofeedback cognitive training is a promising tool used to promote cognitive functions effectively and efficiently. In this study, we investigated a novel functional near-infrared spectroscopy (fNIRS)-based frontoparietal functional connectivity (FC) neurofeedback training paradigm related to working memory, involving healthy adults. Compared with conventional cognitive training studies, we chose the frontoparietal network, a key brain region for cognitive function modulation, as neurofeedback, yielding a strong targeting effect. In the experiment, 10 participants (test group) received three…
Northwest University（西北大学）；Air Force Medical University（空军军医大学）；Xijing Hospital（西京医院）
Identifying functional connectivity biomarkers of major depressive disorder (MDD) patients is essential to advance understanding of the disorder mechanisms and early intervention. However, due to the small sample size and the high dimension of available neuroimaging data, the performance of existing methods is often limited. Multi-site data could enhance the statistical power and sample size, while they are often subject to inter-site heterogeneity and data-sharing policies. In this paper, we propose a federated joint estimator, NOTEARS-PFL, for simultaneous learning of multiple Bayesian netwo…
Anatomical and functional brain studies have converged to the hypothesis that Autism Spectrum Disorders (ASD) are associated with atypical connectivity. Using a modified resting-state paradigm to drive subjects' attention, we provide evidence of a very marked interaction between ASD brain functional connectivity and cognitive state. We show that functional connectivity changes in opposite ways in ASD and typicals as attention shifts from external world towards one's body generated information. Furthermore, ASD subject alter more markedly than typicals their connectivity across cognitive states…
University of Denver（丹佛大学）；Indiana University, Bloomington（印第安纳大学伯明顿分校）
The human brain is a complex network comprised of functionally and anatomically interconnected brain regions. A growing number of studies have suggested that empirical estimates of brain networks may be useful for discovery of biomarkers of disease and cognitive state. A prerequisite for realizing this aim, however, is that brain networks also serve as reliable markers of an individual. Here, using Human Connectome Project data, we build upon recent studies examining brain-based fingerprints of individual subjects and cognitive states based on cognitively-demanding tasks that assess, for examp…
Background: A therapeutic intervention in psychiatry can be viewed as an attempt to influence the brain's large-scale, dynamic network state transitions underlying cognition and behavior. Building on connectome-based graph analysis and control theory, Network Control Theory is emerging as a powerful tool to quantify network controllability - i.e., the influence of one brain region over others regarding dynamic network state transitions. If and how network controllability is related to mental health remains elusive. Methods: From Diffusion Tensor Imaging data, we inferred structural connectivit…
We address a biophysical network dynamical model to study how the modulation of dopamine (DA) activity and related N-methyl-d-aspartate (NMDA) glutamate receptor activity as well as the emerging Pre-Frontal Cortex (PFC) functional connectivity network (FCN) affect inhibitory cognitive function in schizophrenia in an antisaccade task. The values of the model parameters and the topology of the PFC-FCN were estimated by minimizing the differences between simulations and the observed distributions of reaction times (RT) during the performance of the antisaccade task in 30 patients with schizophren…
Functional brain network has been widely studied to understand the relationship between brain organization and behavior. In this paper, we aim to explore the functional connectivity of brain network under a \emph{multi-step} cognitive task involving with consecutive behaviors, and further understand the effect of behaviors on the brain organization. The functional brain networks are constructed base on a high spatial and temporal resolution fMRI dataset and analyzed via complex network based approach. We find that at voxel level the functional brain network shows robust small-worldness and sca…
A key question in modern neuroscience is how cognitive changes in a human brain can be quantified and captured by functional connectomes (FC) . A systematic approach to measure pairwise functional distance at different brain states is lacking. This would provide a straight-forward way to quantify differences in cognitive processing across tasks; also, it would help in relating these differences in task-based FCs to the underlying structural network. Here we propose a framework, based on the concept of Jensen-Shannon divergence, to map the task-rest connectivity distance between tasks and resti…
Understanding neurocognitive computations will require not just localizing cognitive information distributed throughout the brain but also determining how that information got there. We review recent advances in linking empirical and simulated brain network organization with cognitive information processing. Building on these advances, we offer a new framework for understanding the role of connectivity in cognition - network coding (encoding/decoding) models. These models utilize connectivity to specify the transfer of information via neural activity flow processes, successfully predicting the…
Studies in recent years have demonstrated that neural organization and structure impact an individual's ability to perform a given task. Specifically, individuals with greater neural efficiency have been shown to outperform those with less organized functional structure. In this work, we compare the predictive ability of properties of neural connectivity on a working memory task. We provide two novel approaches for characterizing functional network connectivity from electroencephalography (EEG), and compare these features to the average power across frequency bands in EEG channels. Our first n…
Previous research has found that functional connectivity (FC) can accurately predict the identity of a subject performing a task and the type of task being performed. We replicate these results using a large dataset collected at the OSU Center for Cognitive and Behavioral Brain Imaging. We also introduce a novel perspective on task and subject identity prediction: BOLD Variability (BV). Conceptually, BV is a region-specific measure based on the variance within each brain region. BV is simple to compute, interpret, and visualize. We show that both FC and BV are predictive of task and subject, e…
Several approaches to cognition and intelligence research rely on statistics-based models testing, namely factor analysis. In the present work we exploit the emerging dynamical systems perspective putting the focus on the role of the network topology underlying the relationships between cognitive processes. We go through a couple of models of distinct cognitive phenomena and yet find the conditions for them to be mathematically equivalent. We find a non-trivial attractor of the system that corresponds to the exact definition of a well-known network centrality and hence stress the interplay bet…
Exploring General Intelligence via Gated Graph Transformer in Functional Connectivity Studies
Tulane University（杜兰大学）；Mayo Clinic（梅奥诊所）；University of Science and Technology of China（中国科学技术大学）；Institute of Artificial Intelligence（人工智能研究所）；University of Virginia（弗吉尼亚大学）
Monash University Malaysia（莫纳什大学马来西亚分校）；King Abdullah University of Science and Technology（阿卜杜拉国王科技大学）；University College London（伦敦大学学院）
Common measures of brain functional connectivity (FC) including covariance and correlation matrices are semi-positive definite (SPD) matrices residing on a cone-shape Riemannian manifold. Despite its remarkable success for Euclidean-valued data generation, use of standard generative adversarial networks (GANs) to generate manifold-valued FC data neglects its inherent SPD structure and hence the inter-relatedness of edges in real FC. We propose a novel graph-regularized manifold-aware conditional Wasserstein GAN (GR-SPD-GAN) for FC data generation on the SPD manifold that can preserve the globa…
Functional connectivity of cognitive tasks allows researchers to analyse the interaction mapping occurring between different regions of the brain using electroencephalography (EEG) signals. Standard practice in functional connectivity involve studying the electrode pair interactions across several trials. As the cognitive task always involves the human factor, it is inevitable to have lower quality data from the brain signals influenced by the subject concentration or other mental states which can occur anytime over the whole experimental trials. The connectivity among electrodes are heavily i…
BDHT: Generative AI Enables Causality Analysis for Mild Cognitive Impairment
Hubei University of Economics（湖北经济学院）；Hong Kong Baptist University（香港浸会大学）；Shenzhen University（深圳大学）；Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences（中国科学院深圳先进技术研究院）
Fusion Learning from Dynamic Functional Connectivity: Combining the Amplitude and Phase of fMRI Signals to Identify Brain Disorders
Guangdong Provincial Key Laboratory of Multimodal Big Data Intelligent Analysis（广东省多模态大数据智能分析重点实验室）；School of Computer Science and Engineering, South China University of Technology（华南理工大学计算机科学与工程学院）
The human brain network is modular--comprised of communities of tightly interconnected nodes. This network contains local hubs, which have many connections within their own communities, and connector hubs, which have connections diversely distributed across communities. A mechanistic understanding of these hubs and how they support cognition has not been demonstrated. Here, we leveraged individual differences in hub connectivity and cognition. We show that a model of hub connectivity accurately predicts the cognitive performance of 476 individuals in four distinct tasks. Moreover, there is a g…
In recent years, there has been strong interest in neuroscience studies to investigate brain organization through networks of brain regions that demonstrate strong functional connectivity (FC). These networks are extracted from observed fMRI using data-driven analytic methods such as independent component analysis (ICA). A notable limitation of these FC methods is that they do not provide any information on the underlying structural connectivity (SC), which is believed to serve as the basis for interregional interactions in brain activity. We propose a new statistical measure of the strength o…
A major challenge in neuroimaging is understanding the mapping of neurophysiological dynamics onto cognitive functions. Traditionally, these maps have been constructed by examining changes in the activity magnitude of regions related to task performance. Recently, network neuroscience has produced methods to map connectivity patterns among many regions to certain cognitive functions by drawing on tools from network science and graph theory. However, these two different views are rarely addressed simultaneously, largely because few tools exist that account for patterns between nodes while simul…
The shape of the brain's connections is predictive of cognitive performance: an explainable machine learning study
Harvard Medical School（哈佛医学院）；Brigham and Women’s Hospital（布莱根妇女医院）；Massachusetts General Hospital（麻省总医院）；The University of Sydney（悉尼大学）；Beijing Institute of Technology（北京理工大学）；Boston University（波士顿大学）；University of Electronic Science and Technology of China（电子科技大学）；Harvard University（哈佛大学）；Harvard-MIT Health Sciences and Technology（哈佛-麻省理工健康科学与技术学部）
A developmental disorder that severely damages communicative and social functions, the Autism Spectrum Disorder (ASD) also presents aspects related to mental rigidity, repetitive behavior, and difficulty in abstract reasoning. More, imbalances between excitatory and inhibitory brain states, in addition to cortical connectivity disruptions, are at the source of the autistic behavior. Our main goal consists in unveiling the way by which these local excitatory imbalances and/or long brain connections disruptions are linked to the above mentioned cognitive features. We developed a theoretical mode…
The dynamic characteristics of functional network connectivity have been widely acknowledged and studied. Both shared and unique information has been shown to be present in the connectomes. However, very little has been known about whether and how this common pattern can predict the individual variability of the brain, i.e. "brain fingerprinting", which attempts to reliably identify a particular individual from a pool of subjects. In this paper, we propose to enhance the individual uniqueness based on an autoencoder network. More specifically, we rely on the hypothesis that the common neural a…
Cornell University（康奈尔大学）；Weill Cornell Medicine（威尔康奈尔医学院）；Brain and Mind Research Institute, Weill Cornell Medicine（威尔康奈尔医学院脑与心智研究所）；Nancy E. & Peter C. Meinig School of Biomedical Engineering, Cornell University（康奈尔大学南希·E·与彼得·C·梅尼格生物医学工程学院）
Resting-state functional MRI (rsfMRI) yields functional connectomes that can serve as cognitive fingerprints of individuals. Connectomic fingerprints have proven useful in many machine learning tasks, such as predicting subject-specific behavioral traits or task-evoked activity. In this work, we propose a surface-based convolutional neural network (BrainSurfCNN) model to predict individual task contrasts from their resting-state fingerprints. We introduce a reconstructive-contrastive loss that enforces subject-specificity of model outputs while minimizing predictive error. The proposed approac…
Cognitive processes in the brain, like learning, formation of memory, recovery of memorized images, classification of objects have two features: First, there is no supervisor in the brain who controls these processes. Second there is a hugh number of neurons (10^{6} to 10^{10}) involved in those cognitive tasks. For this reason, the search of understanding cognitive processes uses models built from a large number of neurons, but very much simplified neurons. The so-called neural networks have been quite successful in describing certain aspects of brain functions, like the mechanism of associat…
DSAM: A Deep Learning Framework for Analyzing Temporal and Spatial Dynamics in Brain Networks
Georgia State University（佐治亚州立大学）；TReNDs Center（TReNDs中心）；Georgia Institute of Technology（佐治亚理工学院）；Tulane University（杜兰大学）；Los Alamos National Laboratory（洛斯阿拉莫斯国家实验室）；Tribhuvan University（特里布文大学）
Today, the human brain can be studied as a whole. Electroencephalography, magnetoencephalography, or functional magnetic resonance imaging techniques provide functional connectivity patterns between different brain areas, and during different pathological and cognitive neuro-dynamical states. In this Tutorial we review novel complex networks approaches to unveil how brain networks can efficiently manage local processing and global integration for the transfer of information, while being at the same time capable of adapting to satisfy changing neural demands.
Finding the common structural brain connectivity network for a given population is an open problem, crucial for current neuro-science. Recent evidence suggests there's a tightly connected network shared between humans. Obtaining this network will, among many advantages , allow us to focus cognitive and clinical analyses on common connections, thus increasing their statistical power. In turn, knowledge about the common network will facilitate novel analyses to understand the structure-function relationship in the brain. In this work, we present a new algorithm for computing the core structural …
Little is currently known about the coordination of neural activity over longitudinal time-scales and how these changes relate to behavior. To investigate this issue, we used resting-state fMRI data from a single individual to identify the presence of two distinct temporal states that fluctuated over the course of 18 months. We then demonstrated that these temporal states were associated with distinct neural dynamics within individual scanning sessions. In addition, the temporal states were also related to significant alterations in global efficiency, as well as differences in self-reported at…
