We introduce the R package \CRANpkg{SIHR} for statistical inference in high-dimensional generalized linear models with continuous and binary outcomes. The package provides functionalities for constructing confidence intervals and performing hypothesis tests for low-dimensional objectives in both one-sample and two-sample regression settings. We illustrate the usage of \CRANpkg{SIHR} through numerical examples and present real data applications to demonstrate the package's performance and practicality.
This paper presents a selective survey of recent developments in statistical inference and multiple testing for high-dimensional regression models, including linear and logistic regression. We examine the construction of confidence intervals and hypothesis tests for various low-dimensional objectives such as regression coefficients and linear and quadratic functionals. The key technique is to generate debiased and desparsified estimators for the targeted low-dimensional objectives and estimate their uncertainty. In addition to covering the motivations for and intuitions behind these statistica…
In this paper we discuss how to evaluate the differences between fitted logistic regression models across sub-populations. Our motivating example is in studying computerized diagnosis for learning disabilities, where sub-populations based on gender may or may not require separate models. In this context, significance tests for hypotheses of no difference between populations may provide perverse incentives, as larger variances and smaller samples increase the probability of not-rejecting the null. We argue that equivalence testing for a prespecified tolerance level on population differences inc…
We obtain new mathematical properties of the exponentiated odd log-logistic family of distributions, and of its special case named the exponentiated odd log-logistic Weibull, and its log transformed. A new location and scale regression model is constructed, and some simulations are carried out to verify the behavior of the maximum likelihood estimators, and of the modified deviance-based residuals. The methodology is applied to the Japanese-Brazilian emigration data.
This paper looks at effects, due to the boundary, on inference in logistic regression. It shows that first -- and, indeed, higher -- order asymptotic results are not uniform across the model. Near the boundary, effects such as high skewness, discreteness and collinearity dominate, any of which could render inference based on asymptotic normality suspect. A highly interpretable diagnostic tool is proposed allowing the analyst to check if the boundary is going to have an appreciable effect on standard inferential techniques.
In order to overcome multicollinearity, we propose a stochastic restricted Liu-type max- imum likelihood estimator by incorporating Liu-type maximum likelihood estimator (Inan and Erdo- gan, 2013) to the logistic regression model when the linear restrictions are stochastic. We also discuss the properties of the new estimator. Moreover, we give a method to choose the biasing parameter in the new estimator. Finally, a simulation study is given to show the performance of the new estimator.
Consider a set of categorical variables $\mathcal{P}$ where at least one, denoted by $Y$, is binary. The log-linear model that describes the counts in the resulting contingency table implies a specific logistic regression model, with the binary variable as the outcome. Extending results in Christensen (1997), by also considering the case where factors present in the contingency table disappear from the logistic regression model, we prove that the Maximum Likelihood Estimate (MLE) for the parameters of the logistic regression equals the MLE for the corresponding parameters of the log-linear mod…
This short note is to point the reader to notice that the proof of high dimensional asymptotic normality of MLE estimator for logistic regression under the regime $p_n=o(n)$ given in paper: "Maximum likelihood estimation in logistic regression models with a diverging number of covariates. Electronic Journal of Statistics, 6, 1838-1846." is wrong.
This paper derives a new family of estimators, namely the minimum density power divergence estimators, as a robust generalization of the maximum likelihood estimator for the polytomous logistic regression model. Based on these estimators, a family of Wald-type test statistics for linear hypotheses is introduced. Robustness properties of both the proposed estimators and the test statistics are theoretically studied through the classical influence function analysis. Appropriate real life examples are presented to justify the requirement of suitable robust statistical procedures in place of the l…
Compared to the conditional mean as a simple point estimator, the conditional density function is more informative to describe the distributions with multi-modality, asymmetry or heteroskedasticity. In this paper, we propose a novel parametric conditional density estimation method by showing the connection between the general density and the likelihood function of inhomogeneous Poisson process models. The maximum likelihood estimates can be obtained via weighted logistic regressions, and the computation can be significantly relaxed by combining a block-wise alternating maximization scheme and …
This paper rigorously establishes that the existence of the maximum likelihood estimate (MLE) in high-dimensional logistic regression models with Gaussian covariates undergoes a sharp `phase transition'. We introduce an explicit boundary curve $h_{\text{MLE}}$, parameterized by two scalars measuring the overall magnitude of the unknown sequence of regression coefficients, with the following property: in the limit of large sample sizes $n$ and number of features $p$ proportioned in such a way that $p/n \rightarrow κ$, we show that if the problem is sufficiently high dimensional in the sense tha…
We present new stochastic geometry theorems that give bounds on the probability that $m$ random data classes all contain a point in common in their convex hulls. We apply these stochastic separation theorems to obtain bounds on the probability of existence of maximum likelihood estimators in multinomial logistic regression. We also discuss connections to condition numbers for analysis of steepest descent algorithms in logistic regression and to the computation of centerpoints of data clouds.
It is known that when the multicollinearity exists in the logistic regression model, variance of maximum likelihood estimator is unstable. As a remedy, in the context of biased shrinkage ridge estimation, Chang (2015) introduced an almost unbiased Liu estimator in the logistic regression model. Making use of his approach, when some prior knowledge in the form of linear restrictions are also available, we introduce a restricted almost unbiased Liu estimator in the logistic regression model. Statistical properties of this newly defined estimator are derived and some comparison result are also pr…
Logistic regression with unknown sizes has many important applications in biological and medical sciences. All models about this problem in the literature are parametric ones. A semiparametric regression model is proposed. This model incorporates overdispersion due to the variation of sizes, and allows general dose-response relations. An Expectation Conditional Maximization algorithm is provided to maximize the log likelihood. The bootstrap method can be used to construct confidence intervals for regression coefficients. Simulation is performed to study the behavior of the proposed model. Two …
Estimation for the log-logistic and Weibull distributions can be performed by using the equations used for probability plotting. The equations leads to highly heteroscedastic regression. Exact expressions for the variances of the residuals are derived which can be used to perform weighted regression. In large samples maximum likelihood performs best, but it is shown that in smaller samples the weighted regression outperforms maximum likelihood estimation with respect to bias and mean square error.
Analyzing polytomous response from a complex survey scheme, like stratified or cluster sampling is very crucial in several socio-economics applications. We present a class of minimum quasi weighted density power divergence estimators for the polytomous logistic regression model with such a complex survey. This family of semiparametric estimators is a robust generalization of the maximum quasi weighted likelihood estimator exploiting the advantages of the popular density power divergence measure. Accordingly robust estimators for the design effects are also derived. Robust testing of general li…
This article presents methods for the construction of two-sided and one-sided simultaneous hyperbolic bands for the logistic and probit regression models when the predictor variable is restricted to a given interval. The bands are constructed based on the asymptotic properties of the maximum likelihood estimators. Past articles have considered building two-sided asymptotic confidence bands for the logistic model, such as Piegorsch and Casella (1988). However, the confidence bands given by Piegorsch and Casella are conservative under a single interval restriction, and it is shown in this articl…
We want to analyse EEG recordings in order to investigate the phonemic categorization at a very early stage of auditory processing. This problem can be modelled by a supervised classification of functional data. Discrimination is explored via a logistic functional linear model, using a wavelet representation of the data. Different procedures are investigated, based on penalized likelihood and principal component reduction or partial least squares reduction.
In the last decade, the secondary use of large data from health systems, such as electronic health records, has demonstrated great promise in advancing biomedical discoveries and improving clinical decision making. However, there is an increasing concern about biases in association studies caused by misclassification in the binary outcomes derived from electronic health records. We revisit the classical logistic regression model with misclassified outcomes. Despite that local identification conditions in some related settings have been previously established, the global identification of such …
We consider the problem of link prediction, based on partial observation of a large network, and on side information associated to its vertices. The generative model is formulated as a matrix logistic regression. The performance of the model is analysed in a high-dimensional regime under a structural assumption. The minimax rate for the Frobenius-norm risk is established and a combinatorial estimator based on the penalised maximum likelihood approach is shown to achieve it. Furthermore, it is shown that this rate cannot be attained by any (randomised) algorithm computable in polynomial time un…
Logistic regression is a well-known statistical model which is commonly used in the situation where the output is a binary random variable. It has a wide range of applications including machine learning, public health, social sciences, ecology and econometry. In order to estimate the unknown parameters of logistic regression with data streams arriving sequentially and at high speed, we focus our attention on a recursive stochastic algorithm. More precisely, we investigate the asymptotic behavior of a new stochastic Newton algorithm. It enables to easily update the estimates when the data arriv…
In cluster-specific studies, ordinary logistic regression and conditional logistic regression for binary outcomes provide maximum likelihood estimator (MLE) and conditional maximum likelihood estimator (CMLE), respectively. In this paper, we show that CMLE is approaching to MLE asymptotically when each individual data point is replicated infinitely many times. Our theoretical derivation is based on the observation that a term appearing in the conditional average log-likelihood function is the coefficient of a polynomial, and hence can be transformed to a complex integral by Cauchy's differenti…
In the last decades, it has been discussed the use of epidemiological prevalence ratio (PR) rather than odds ratio as a measure of association to be estimated in cross-sectional studies. The main difficulties in use of statistical models for the calculation of PR are convergence problems, availability of adequate tools and strong assumptions. The goal of this study is to illustrate how to estimate PR and its confidence interval directly from logistic regression estimates. We present three examples and compare the adjusted estimates of PR with the estimates obtained by use of log-binomial, robu…
This paper proposes a distributionally robust approach to logistic regression. We use the Wasserstein distance to construct a ball in the space of probability distributions centered at the uniform distribution on the training samples. If the radius of this ball is chosen judiciously, we can guarantee that it contains the unknown data-generating distribution with high confidence. We then formulate a distributionally robust logistic regression model that minimizes a worst-case expected logloss function, where the worst case is taken over all distributions in the Wasserstein ball. We prove that t…
Finite-sample performance of the maximum likelihood estimator in logistic regression
Department of Statistics, University of California, Berkeley, USA（加州大学伯克利分校统计学系）；Department of Statistics, CREST/ENSAE Paris, Palaiseau, France（巴黎中央银行与应用经济学院统计学系）
Logistic regression is commonly used for modeling dichotomous outcomes. In the classical setting, where the number of observations is much larger than the number of parameters, properties of the maximum likelihood estimator in logistic regression are well understood. Recently, Sur and Candes have studied logistic regression in the high-dimensional regime, where the number of observations and parameters are comparable, and show, among other things, that the maximum likelihood estimator is biased. In the high-dimensional regime the underlying parameter vector is often structured (sparse, block-s…
In this paper we introduce a novel Bayesian data augmentation approach for estimating the parameters of the generalised logistic regression model. We propose a Pólya-Gamma sampler algorithm that allows us to sample from the exact posterior distribution, rather than relying on approximations. A simulation study illustrates the flexibility and accuracy of the proposed approach to capture heavy and light tails in binary response data of different dimensions. The methodology is applied to two different real datasets, where we demonstrate that the Pólya-Gamma sampler provides more precise estimates…
Scalar-on-function logistic regression, where the response is a binary outcome and the predictor consists of random curves, has become a general framework to explore a linear relationship between the binary outcome and functional predictor. Most of the methods used to estimate this model are based on the least-squares type estimators. However, the least-squares estimator is seriously hindered by outliers, leading to biased parameter estimates and an increased probability of misclassification. This paper proposes a robust partial least squares method to estimate the regression coefficient funct…
In this paper, we develop a simulation-based framework for regularized logistic regression, exploiting two novel results for scale mixtures of normals. By carefully choosing a hierarchical model for the likelihood by one type of mixture, and implementing regularization with another, we obtain new MCMC schemes with varying efficiency depending on the data type (binary v. binomial, say) and the desired estimator (maximum likelihood, maximum a posteriori, posterior mean). Advantages of our omnibus approach include flexibility, computational efficiency, applicability in p >> n settings, uncertaint…
Logistic regression models are a popular and effective method to predict the probability of categorical response data. However inference for these models can become computationally prohibitive for large datasets. Here we adapt ideas from symbolic data analysis to summarise the collection of predictor variables into histogram form, and perform inference on this summary dataset. We develop ideas based on composite likelihoods to derive an efficient one-versus-rest approximate composite likelihood model for histogram-based random variables, constructed from low-dimensional marginal histograms obt…
Extra-large datasets are becoming increasingly accessible, and computing tools designed to handle huge amount of data efficiently are democratizing rapidly. However, conventional statistical and econometric tools are still lacking fluency when dealing with such large datasets. This paper dives into econometrics on big datasets, specifically focusing on the logistic regression on Spark. We review the robustness of the functions available in Spark to fit logistic regression and introduce a package that we developed in PySpark which returns the statistical summary of the logistic regression, nece…
Previous work has demonstrated the feasibility and value of conducting distributed regression analysis (DRA), a privacy-protecting analytic method that performs multivariable-adjusted regression analysis with only summary-level information from participating sites. To our knowledge, there are no DRA applications in SAS, the statistical software used by several large national distributed data networks (DDNs), including the Sentinel System and PCORnet. SAS/IML is available to perform the required matrix computations for DRA in the SAS system. However, not all data partners in these large DDNs ha…
We present a family of expectation-maximization (EM) algorithms for binary and negative-binomial logistic regression, drawing a sharp connection with the variational-Bayes algorithm of Jaakkola and Jordan (2000). Indeed, our results allow a version of this variational-Bayes approach to be re-interpreted as a true EM algorithm. We study several interesting features of the algorithm, and of this previously unrecognized connection with variational Bayes. We also generalize the approach to sparsity-promoting priors, and to an online method whose convergence properties are easily established. This …
