The density ratio model (DRM) provides a flexible and useful platform for combining information from multiple sources. In this paper, we consider statistical inference under two-sample DRMs with additional parameters defined through and/or additional auxiliary information expressed as estimating equations. We examine the asymptotic properties of the maximum empirical likelihood estimators (MELEs) of the unknown parameters in the DRMs and/or defined through estimating equations, and establish the chi-square limiting distributions for the empirical likelihood ratio (ELR) statistics. We show that the asymptotic variance of the MELEs of the unknown parameters does not decrease if one estimating equation is dropped. Similar properties are obtained for inferences on the cumulative distribution function and quantiles of each of the populations involved. We also propose an ELR test for the validity and usefulness of the auxiliary information. Simulation studies show that correctly specified estimating equations for the auxiliary information result in more efficient estimators and shorter confidence intervals. Two real-data examples are used for illustrations.
We suggest an iterative approach to computing K-step maximum likelihood estimates (MLE) of the parametric components in semiparametric models based on their profile likelihoods. The higher order convergence rate of K-step MLE mainly depends on the precision of its initial estimate and the convergence rate of the nuisance functional parameter in the semiparametric model. Moreover, we can show that the K-step MLE is as asymptotically efficient as the regular MLE after a finite number of iterative steps. Our theory is verified for several specific semiparametric models. Simulation studies are als…
Interval-censored multi-state data arise in many studies of chronic diseases, where the health status of a subject can be characterized by a finite number of disease states and the transition between any two states is only known to occur over a broad time interval. We formulate the effects of potentially time-dependent covariates on multi-state processes through semiparametric proportional intensity models with random effects. We adopt nonparametric maximum likelihood estimation (NPMLE) under general interval censoring and develop a stable expectation-maximization (EM) algorithm. We show that …
There is a difficulty in finding an estimate of variance of the profile likelihood estimator in the joint model of longitudinal and survival data. We solve the difficulty by introducing the ``statistical generalized derivative''. The derivative is used to show the asymptotic normality of the estimator without assuming the second derivative of the density function in the model exists.
In this work we present a simple estimation procedure for a general frailty model for analysis of prospective correlated failure times. Earlier work showed this method to perform well in a simulation study. Here we provide rigorous large-sample theory for the proposed estimators of both the regression coefficient vector and the dependence parameter, including consistent variance estimators.
This paper considers an estimation of semiparametric functional (varying)-coefficient quantile regression with spatial data. A general robust framework is developed that treats quantile regression for spatial data in a natural semiparametric way. The local M-estimators of the unknown functional-coefficient functions are proposed by using local linear approximation, and their asymptotic distributions are then established under weak spatial mixing conditions allowing the data processes to be either stationary or nonstationary with spatial trends. Application to a soil data set is demonstrated wi…
Maximum likelihood estimators are proposed for the parameters and the densities in a semiparametric density ratio model in which the nonparametric baseline density is approximated by the Bernstein polynomial model. The EM algorithm is used to obtain the maximum approximate Bernstein likelihood estimates. Simulation study shows that the performance of the proposed method is much better than the existing ones. The proposed method is illustrated by real data examples. Some asymptotic results are also presented and proved.
In this article, the weighted empirical likelihood is applied to a general setting of two-sample semiparametric models, which includes biased sampling models and case-control logistic regression models as special cases. For various types of censored data, such as right censored data, doubly censored data, interval censored data and partly interval-censored data, the weighted empirical likelihood-based semiparametric maximum likelihood estimator $(\tildeθ_n,\tilde{F}_n)$ for the underlying parameter $θ_0$ and distribution $F_0$ is derived, and the strong consistency of $(\tildeθ_n,\tilde{F}_n)$…
We investigate a semiparametric regression model where one gets noisy non linear non invertible functions of the observations. We focus on the application to bearings-only tracking. We first investigate the least squares estimator and prove its consistency and asymptotic normality under mild assumptions. We study the semiparametric likelihood process and prove local asymptotic normality of the model. This allows to define the efficient Fisher information as a lower bound for the asymptotic variance of regular estimators, and to prove that the parametric likelihood estimator is regular and asym…
Statistical inference with nonresponse is quite challenging, especially when the response mechanism is nonignorable. The existing methods often require correct model specifications for both outcome and response models. However, due to nonresponse, both models cannot be verified from data directly and model misspecification can lead to a seriously biased inference. To overcome this limitation, we develop a robust and efficient semiparametric method based on the profile likelihood. The proposed method uses the robust semiparametric response model, in which fully unspecified function of study var…
We consider estimation in a particular semiparametric regression model for the mean of a counting process with ``panel count'' data. The basic model assumption is that the conditional mean function of the counting process is of the form $E\{\mathbb{N}(t)|Z\}=\exp(β_0^TZ)Λ_0(t)$ where $Z$ is a vector of covariates and $Λ_0$ is the baseline mean function. The ``panel count'' observation scheme involves observation of the counting process $\mathbb{N}$ for an individual at a random number $K$ of random time points; both the number and the locations of these time points may differ across individual…
Motivated by studies in biological sciences to detect differentially expressed genes, a semiparametric two-component mixture model with one known component is being studied in this paper. Assuming the density of the unknown component to be log-concave, which contains a very broad family of densities, we develop a semiparametric maximum likelihood estimator and propose an EM algorithm to compute it. Our new estimation method finds the mixing proportions and the distribution of the unknown component simultaneously. We establish the identifiability of the proposed semiparametric mixture model and…
We study semiparametric time series models with innovations following a log-concave distribution. We propose a general maximum likelihood framework which allows us to estimate simultaneously the parameters of the model and the density of the innovations. This framework can be easily adapted to many well-known models, including ARMA, GARCH and ARMA-GARCH. Furthermore, we show that the estimator under our new framework is consistent in both ARMA and ARMA-GARCH settings. We demonstrate its finite sample performance via a thorough simulation study and apply it to model the daily log-return of FTSE…
This paper deals with a situation when one is interested in the dependence structure of a multidimensional response variable in the presence of a multivariate covariate. It is assumed that the covariate affects only the marginal distributions through regression models while the dependence structure, which is described by a copula, is unaffected. A parametric estimation of the copula function is considered with focus on the maximum pseudo-likelihood method. It is proved that under some appropriate regularity assumptions the estimator calculated from the residuals is asymptotically equivalent to…
This work was motivated by observational studies in pregnancy with spontaneous abortion (SAB) as outcome. Clearly some women experience the SAB event but the rest do not. In addition, the data are left truncated due to the way pregnant women are recruited into these studies. For those women who do experience SAB, their exact event times are sometimes unknown. Finally, a small percentage of the women are lost to follow-up during their pregnancy. All these give rise to data that are left truncated, partly interval and right-censored, and with a clearly defined cured portion. We consider the non-…
This paper considers a wide family of semiparametric repeated measures regression models, in which the main interest is on estimating population-level quantities such as mean, variance, probabilities etc. Examples of our framework include generalized linear models for clustered/longitudinal data, among many others. We derive plug-in kernel-based estimators of the population level quantities and derive their asymptotic distribution. An example involving estimation of the survival function of hemoglobin measures in the Kenya hemoglobin study data is presented to demonstrate our methodology.
In many semiparametric models that are parameterized by two types of parameters---a Euclidean parameter of interest and an infinite-dimensional nuisance parameter---the two parameters are bundled together, that is, the nuisance parameter is an unknown function that contains the parameter of interest as part of its argument. For example, in a linear regression model for censored survival data, the unspecified error distribution function involves the regression coefficients. Motivated by developing an efficient estimating method for the regression parameters, we propose a general sieve M-theorem…
Semiparametric regression offers a flexible framework for modeling non-linear relationships between a response and covariates. A prime example are generalized additive models where splines (say) are used to approximate non-linear functional components in conjunction with a quadratic penalty to control for overfitting. Estimation and inference are then generally performed based on the penalized likelihood, or under a mixed model framework. The penalized likelihood framework is fast but potentially unstable, and choosing the smoothing parameters needs to be done externally using cross-validation…
Logistic regression with unknown sizes has many important applications in biological and medical sciences. All models about this problem in the literature are parametric ones. A semiparametric regression model is proposed. This model incorporates overdispersion due to the variation of sizes, and allows general dose-response relations. An Expectation Conditional Maximization algorithm is provided to maximize the log likelihood. The bootstrap method can be used to construct confidence intervals for regression coefficients. Simulation is performed to study the behavior of the proposed model. Two …
In this paper, we are concerned with how to select significant variables in semiparametric modeling. Variable selection for semiparametric regression models consists of two components: model selection for nonparametric components and selection of significant variables for the parametric portion. Thus, semiparametric variable selection is much more challenging than parametric variable selection (e.g., linear and generalized linear models) because traditional variable selection procedures including stepwise regression and the best subset selection now require separate model selection for the non…
We derive independence tests by means of dependence measures thresholding in a semiparametric context. Precisely, estimates of phi-mutual informations, associated to phi-divergences between a joint distribution and the product distribution of its margins, are derived through the dual representation of phi-divergences. The asymptotic properties of the proposed estimates are established, including consistency, asymptotic distributions and large deviations principle. The obtained tests of independence are compared via their relative asymptotic Bahadur efficiency and numerical simulations. It foll…
Consider the semiparametric transformation model $Λ_{θ_o}(Y)=m(X)+ε$, where $θ_o$ is an unknown finite dimensional parameter, the functions $Λ_{θ_o}$ and $m$ are smooth, $ε$ is independent of $X$, and $\esp(ε)=0$. We propose a kernel-type estimator of the density of the error $ε$, and prove its asymptotic normality. The estimated errors, which lie at the basis of this estimator, are obtained from a profile likelihood estimator of $θ_o$ and a nonparametric kernel estimator of $m$. The practical performance of the proposed density estimator is evaluated in a simulation study.
Estimating the effective dimension reduction (EDR) space, related to the semiparametric regression model introduced by Li \cite{sir}, is based on the estimation of the covariance matrix $Λ$ of the conditional expectation of the vector of predictors given the response. An estimator $\widehatΛ_n$ of $Λ$ based on kernel method was introduced by Zhu and Fang \cite{Asymptotics} who then derived, under some conditions, the asymptotic distribution of $\sqrt{n}\left(\widehatΛ_n-Λ\right)$, as $n\rightarrow +\infty$. In this paper, we obtain, under specified conditions, the almost sure convergence of $\…
The Gini index is a popular inequality measure with many applications in social and economic studies. This paper studies semiparametric inference on the Gini indices of two semicontinuous populations. We characterize the distribution of each semicontinuous population by a mixture of a discrete point mass at zero and a continuous skewed positive component. A semiparametric density ratio model is then employed to link the positive components of the two distributions. We propose the maximum empirical likelihood estimators of the two Gini indices and their difference, and further investigate the a…
The problem of estimating the shift (or, equivalently, the center of symmetry) of an unknown symmetric and periodic function $f$ observed in Gaussian white noise is considered. Using the blockwise Stein method, a penalized profile likelihood with a data-driven penalization is introduced so that the estimator of the center of symmetry is defined as the maximizer of the penalized profile likelihood. This estimator has the advantage of being independent of the functional class to which the signal $f$ si assumed to belong and, furthermore, is shown to be semiparametrically adaptive and efficient. …
In this paper, we propose new semiparametric procedures for making inference on linear functionals and their functions of two semicontinuous populations. The distribution of each population is usually characterized by a mixture of a discrete point mass at zero and a continuous skewed positive component, and hence such distribution is semicontinuous in the nature. To utilize the information from both populations, we model the positive components of the two mixture distributions via a semiparametric density ratio model. Under this model setup, we construct the maximum empirical likelihood estima…
The complexity of semiparametric models poses new challenges to statistical inference and model selection that frequently arise from real applications. In this work, we propose new estimation and variable selection procedures for the semiparametric varying-coefficient partially linear model. We first study quantile regression estimates for the nonparametric varying-coefficient functions and the parametric regression coefficients. To achieve nice efficiency properties, we further develop a semiparametric composite quantile regression procedure. We establish the asymptotic normality of proposed …
In this paper, we consider nonparametric multidimensional finite mixture models and we are interested in the semiparametric estimation of the population weights. Here, the i.i.d. observations are assumed to have at least three components which are independent given the population. We approximate the semiparametric model by projecting the conditional distributions on step functions associated to some partition. Our first main result is that if we refine the partition slowly enough, the associated sequence of maximum likelihood estimators of the weights is asymptotically efficient, and the poste…
The Youden index is a popular summary statistic for receiver operating characteristic curve. It gives the optimal cutoff point of a biomarker to distinguish the diseased and healthy individuals. In this paper, we propose to model the distributions of a biomarker for individuals in the healthy and diseased groups via a semiparametric density ratio model. Based on this model, we use the maximum empirical likelihood method to estimate the Youden index and the optimal cutoff point. We further establish the asymptotic normality of the proposed estimators and construct valid confidence intervals for…
We consider a class of doubly weighted rank-based estimating methods for the transformation (or accelerated failure time) model with missing data as arise, for example, in case-cohort studies. The weights considered may not be predictable as required in a martingale stochastic process formulation. We treat the general problem as a semiparametric estimating equation problem and provide proofs of asymptotic properties for the weighted estimators, with either true weights or estimated weights, by using empirical process theory where martingale theory may fail. Simulations show that the outcome-de…
We study the weak convergence (in the high-frequency limit) of the parameter estimators of power spectrum coefficients associated with Gaussian, spherical and isotropic random fields. In particular, we introduce a Whittle-type approximate maximum likelihood estimator and we investigate its asympotic weak consistency and Gaussianity, in both parametric and semiparametric cases.
Analyzing polytomous response from a complex survey scheme, like stratified or cluster sampling is very crucial in several socio-economics applications. We present a class of minimum quasi weighted density power divergence estimators for the polytomous logistic regression model with such a complex survey. This family of semiparametric estimators is a robust generalization of the maximum quasi weighted likelihood estimator exploiting the advantages of the popular density power divergence measure. Accordingly robust estimators for the design effects are also derived. Robust testing of general li…
This paper considers the efficient estimation of copula-based semiparametric strictly stationary Markov models. These models are characterized by nonparametric invariant (one-dimensional marginal) distributions and parametric bivariate copula functions where the copulas capture temporal dependence and tail dependence of the processes. The Markov processes generated via tail dependent copulas may look highly persistent and are useful for financial and economic applications. We first show that Markov processes generated via Clayton, Gumbel and Student's $t$ copulas and their survival copulas are…
We consider a semiparametric generalized linear model and study estimation of both marginal and quantile effects in this model. We propose an approximate maximum likelihood estimator, and rigorously establish the consistency, the asymptotic normality, and the semiparametric efficiency of our method in both the marginal effect and the quantile effect estimation. Simulation studies are conducted to illustrate the finite sample performance, and we apply the new tool to analyze a Swiss non-labor income data and discover a new interesting predictor.
The cumulative incidence is the probability of failure from the cause of interest over a certain time period in the presence of other risks. A semiparametric regression model proposed by Fine and Gray (1999) has become the method of choice for formulating the effects of covariates on the cumulative incidence. Its estimation, however, requires modeling of the censoring distribution and is not statistically efficient. In this paper, we present a broad class of semiparametric transformation models which extends the Fine and Gray model, and we allow for unknown causes of failure. We derive the non…
Recent methods for estimating sparse undirected graphs for real-valued data in high dimensional problems rely heavily on the assumption of normality. We show how to use a semiparametric Gaussian copula--or "nonparanormal"--for high dimensional inference. Just as additive models extend linear models by replacing linear functions with a set of one-dimensional smooth functions, the nonparanormal extends the normal by transforming the variables by smooth functions. We derive a method for estimating the nonparanormal, study the method's theoretical properties, and show that it works well in many ex…
Consider semiparametric estimation where a doubly robust estimating function for a low-dimensional parameter is available, depending on two working models. With high-dimensional data, we develop regularized calibrated estimation as a general method for estimating the parameters in the two working models, such that valid Wald confidence intervals can be obtained for the parameter of interest under suitable sparsity conditions if either of the two working models is correctly specified. We propose a computationally tractable two-step algorithm and provide rigorous theoretical analysis which justi…
We study semiparametric inference in some linear regression models with time-varying coefficients, dependent regressors and dependent errors. This problem, which has been considered recently by Zhang and Wu (2012) under the functional dependence measure, is interesting for parsimony reasons or for testing stability of some coefficients in a linear regression model. In this paper, we propose a different procedure for estimating non time-varying parameters at the rate root n, in the spirit of the method introduced by Robinson (1988) for partially linear models. When the errors in the model are m…
It is well known that the minimax rates of convergence of nonparametric density and regression function estimation of a random variable measured with error is much slower than the rate in the error free case. Surprisingly, we show that if one is willing to impose a relatively mild assumption in requiring that the error-prone variable has a compact support, then the results can be greatly improved. We describe new and constructive methods to take full advantage of the compact support assumption via spline-assisted semiparametric methods. We further prove that the new estimator achieves the usua…
This paper revisits the classical inference results for profile quasi maximum likelihood estimators (profile MLE) in the semiparametric estimation problem. We mainly focus on two prominent theorems: the Wilks phenomenon and Fisher expansion for the profile MLE are stated in a new fashion allowing finite samples and model misspecification. The method of study is also essentially different from the usual analysis of the semiparametric problem based on the notion of the hardest parametric submodel. Instead we derive finite sample deviation bounds for the linear approximation error for the gradien…
The purpose of this paper is to introduce two semiparametric methods for the estimation of copula parameter. These methods are based on minimum Alpha-Divergence between a non-parametric estimation of copula density using local likelihood probit transformation method and a true copula density function. A Monte Carlo study is performed to measure the performance of these methods based on Hellinger distance and Neyman divergence as special cases of Alpha-Divergence. Simulation results are compared to the Maximum Pseudo-Likelihood (MPL) estimation as a conventional estimation method in well-known …
Using the classical estimation method of moments, we propose a new semiparametric estimation procedure for multi-parameter copula models. Consistency and asymptotic normality of the obtained estimators are established. By considering an Archimedean copula model, an extensive simulation study, comparing these estimators with the pseudo maximum likelihood, rho-inversion and tau-inversion ones, is carried out. We show that, with regards to the other methods, the moment based estimation is quick and simple to use with reasonable bias and root mean squared error.
This paper highlights a tension between semiparametric efficiency and bootstrap consistency in the context of a canonical semiparametric estimation problem, namely the problem of estimating the average density. It is shown that although simple plug-in estimators suffer from bias problems preventing them from achieving semiparametric efficiency under minimal smoothness conditions, the nonparametric bootstrap automatically corrects for this bias and that, as a result, these seemingly inferior estimators achieve bootstrap consistency under minimal smoothness conditions. In contrast, several "debi…
Extreme-value copulas arise as the limiting dependence structure of component-wise maxima. Defined in terms of a functional parameter, they are one of the most widespread copula families due to their flexibility and ability to capture asymmetry. Despite this, meeting the complex analytical properties of this parameter in an unconstrained setting remains a challenge, restricting most uses to models with very few parameters or nonparametric models. Focusing on the bivariate case, we propose a novel semiparametric approach. Our procedure relies on a series of transformations, including Williamson…
Structural failure time models are causal models for estimating the effect of time-varying treatments on a survival outcome. G-estimation and artificial censoring have been proposed to estimate the model parameters in the presence of time-dependent confounding and administrative censoring. However, most of existing methods require manually preprocessing data into regularly spaced data, which may invalidate the subsequent causal analysis. Moreover, the computation and inference are challenging due to the non-smoothness of artificial censoring. We propose a class of continuous-time structural fa…
Stimulated by the Boston house price data, in this paper, we propose a semiparametric spatial dynamic model, which extends the ordinary spatial autoregressive models to accommodate the effects of some covariates associated with the house price. A profile likelihood based estimation procedure is proposed. The asymptotic normality of the proposed estimators are derived. We also investigate how to identify the parametric/nonparametric components in the proposed semiparametric model. We show how many unknown parameters an unknown bivariate function amounts to, and propose an AIC/BIC of nonparametr…
A common practice in obtaining a semiparametric efficient estimate is through iteratively maximizing the (penalized) log-likelihood w.r.t. its Euclidean parameter and functional nuisance parameter via Newton-Raphson algorithm. The purpose of this paper is to provide a formula in calculating the minimal number of iterations $k^\ast$ needed to produce an efficient estimate $\hatθ_n^{(k^\ast)}$ from a theoretical point of view. We discover that (a) $k^\ast$ depends on the convergence rates of the initial estimate and nuisance estimate; (b) more than $k^\ast$ iterations, i.e., $k$, will only impro…
One fundamental statistical question for research areas such as precision medicine and health disparity is about discovering effect modification of treatment or exposure by observed covariates. We propose a semiparametric framework for identifying such effect modification. Instead of using the traditional outcome models, we directly posit semiparametric models on contrasts, or expected differences of the outcome under different treatment choices or exposures. Through semiparametric estimation theory, all valid estimating equations, including the efficient scores, are derived. Besides doubly ro…
Consider $M$-estimation in a semiparametric model that is characterized by a Euclidean parameter of interest and an infinite-dimensional nuisance parameter. As a general purpose approach to statistical inferences, the bootstrap has found wide applications in semiparametric $M$-estimation and, because of its simplicity, provides an attractive alternative to the inference approach based on the asymptotic distribution theory. The purpose of this paper is to provide theoretical justifications for the use of bootstrap as a semiparametric inferential tool. We show that, under general conditions, the…
How to deal with nonignorable response is often a challenging problem encountered in statistical analysis with missing data. Parametric model assumption for the response mechanism is often made and there is no way to validate the model assumption with missing data. We consider a semiparametric response model that relaxes the parametric model assumption in the response mechanism. Two types of efficient estimators, profile maximum likelihood estimator and profile calibration estimator, are proposed and their asymptotic properties are investigated. Two extensive simulation studies are used to com…
We consider tests of hypotheses when the parameters are not identifiable under the null in semiparametric models, where regularity conditions for profile likelihood theory fail. Exponential average tests based on integrated profile likelihood are constructed and shown to be asymptotically optimal under a weighted average power criterion with respect to a prior on the nonidentifiable aspect of the model. These results extend existing results for parametric models, which involve more restrictive assumptions on the form of the alternative than do our results. Moreover, the proposed tests accommod…
This paper provides a semiparametric model of estimating states of the volatility defined as the squared diffusion coefficient of a stochastic differential equation. Without assuming any functional form of the volatility function, we consider the volatility state as an unobservable state in a state space model and estimate it by filtering. By using the estimates, we can draw the information on what kind of functions the volatility has behind the observable state of the process. We also prove the consistency of the model in the sense that estimated states converges to the true ones as the obser…
