APSP with small integer weights in undirected graphs [Seidel'95, Galil and Margalit'97] has an $\tilde{O}(n^ω)$ time algorithm, where $ω<2.373$ is the matrix multiplication exponent. APSP in directed graphs with small weights however, has a much slower running time that would be $Ω(n^{2.5})$ even if $ω=2$ [Zwick'02]. To understand this $n^{2.5}$ bottleneck, we build a web of reductions around directed unweighted APSP. We show that it is fine-grained equivalent to computing a rectangular Min-Plus product for matrices with integer entries; the dimensions and entry size of the matrices depend on the value of $ω$. As a consequence, we establish an equivalence between APSP in directed unweighted graphs, APSP in directed graphs with small $(\tilde{O}(1))$ integer weights, All-Pairs Longest Paths in DAGs with small weights, approximate APSP with additive error $c$ in directed graphs with small weights, for $c\le \tilde{O}(1)$ and several other graph problems. We also provide fine-grained reductions from directed unweighted APSP to All-Pairs Shortest Lightest Paths (APSLP) in undirected graphs with $\{0,1\}$ weights and $\#_{\text{mod}\ c}$APSP in directed unweighted graphs (computing counts mod $c$).
We complement our hardness results with new algorithms. We improve the known algorithms for APSLP in directed graphs with small integer weights and for approximate APSP with sublinear additive error in directed unweighted graphs. Our algorithm for approximate APSP with sublinear additive error is optimal, when viewed as a reduction to Min-Plus product. We also give new algorithms for variants of #APSP in unweighted graphs, as well as a near-optimal $\tilde{O}(n^3)$-time algorithm for the original #APSP problem in unweighted graphs. Our techniques also lead to a simpler alternative for the original APSP problem in undirected graphs with small integer weights.
Covers are a kind of quasiperiodicity in strings. A string $C$ is a cover of another string $T$ if any position of $T$ is inside some occurrence of $C$ in $T$. The shortest and longest cover arrays of $T$ have the lengths of the shortest and longest covers of each prefix of $T$, respectively. The literature has proposed linear-time algorithms computing longest and shortest cover arrays taking border arrays as input. An equivalence relation $\approx$ over strings is called a substring consistent equivalence relation (SCER) iff $X \approx Y$ implies (1) $|X| = |Y|$ and (2) $X[i:j] \approx Y[i:j]…
Although recent scientific output focuses on multiple shortest-path problem definitions for road networks, none of the existing solutions does efficiently answer all different types of SP queries. This work proposes SALT, a novel framework that not only efficiently answers SP related queries but also k-nearest neighbor queries not handled by previous approaches. Our solution offers all the benefits needed for practical use-cases, including excellent query performance and very short preprocessing times, thus making it also a viable option for dynamic road networks, i.e., edge weights changing f…
A superstring of a set of strings correspond to a string which contains all the other strings as substrings. The problem of finding the Shortest Linear Superstring is a well-know and well-studied problem in stringology. We present here a variant of this problem, the Shortest Circular Superstring problem where the sought superstring is a circular string. We show a strong link between these two problems and prove that the Shortest Circular Superstring problem is NP-complete. Moreover, we propose a new conjecture on the approximation ratio of the Shortest Circular Superstring problem.
We present a new approach called GR (Graph Reduction) algorithm for searching loop-less k-shortest paths (1st to k-th shortest paths) in a graph based on graph reduction. Let a source vertex and a target vertex of k-shortest paths be v_s and v_t respectively. First our approach computes shortest paths to every vertex from v_s and v_t respectively, and reduce a graph to a subgraph that contains all vertices and edges of loop-less k-shortest paths using the already computed shortest paths, and apply an existing k-shortest path search algorithm to the reduced graph. A graph can be reduced quickly…
A shortest-path algorithm finds a path containing the minimal cost between two vertices in a graph. A plethora of shortest-path algorithms is studied in the literature that span across multiple disciplines. This paper presents a survey of shortest-path algorithms based on a taxonomy that is introduced in the paper. One dimension of this taxonomy is the various flavors of the shortest-path problem. There is no one general algorithm that is capable of solving all variants of the shortest-path problem due to the space and time complexities associated with each algorithm. Other important dimension…
The Random-Facet algorithm of Kalai and of Matousek, Sharir and Welzl is an elegant randomized algorithm for solving linear programs and more general LP-type problems. Its expected subexponential time of $2^{\tilde{O}(\sqrt{m})}$, where $m$ is the number of inequalities, makes it the fastest known combinatorial algorithm for solving linear programs. We previously showed that Random-Facet performs an expected number of $2^{\tildeΩ(\sqrt[3]{m})}$ pivoting steps on some LPs with $m$ inequalities that correspond to $m$-action Markov Decision Processes (MDPs). We also showed that Random-Facet-1P, a…
We consider the quantum time complexity of the all pairs shortest paths (APSP) problem and some of its variants. The trivial classical algorithm for APSP and most all pairs path problems runs in $O(n^3)$ time, while the trivial algorithm in the quantum setting runs in $\tilde{O}(n^{2.5})$ time, using Grover search. A major open problem in classical algorithms is to obtain a truly subcubic time algorithm for APSP, i.e. an algorithm running in $O(n^{3-\varepsilon})$ time for constant $\varepsilon>0$. To approach this problem, many truly subcubic time classical algorithms have been devised for AP…
We present an all-pairs shortest path algorithm whose running time on a complete directed graph on $n$ vertices whose edge weights are chosen independently and uniformly at random from $[0,1]$ is $O(n^2)$, in expectation and with high probability. This resolves a long standing open problem. The algorithm is a variant of the dynamic all-pairs shortest paths algorithm of Demetrescu and Italiano. The analysis relies on a proof that the number of \emph{locally shortest paths} in such randomly weighted graphs is $O(n^2)$, in expectation and with high probability. We also present a dynamic version o…
The problem of finding multiple simple shortest paths in a weighted directed graph $G=(V,E)$ has many applications, and is considerably more difficult than the corresponding problem when cycles are allowed in the paths. Even for a single source-sink pair, it is known that two simple shortest paths cannot be found in time polynomially smaller than $n^3$ (where $n=|V|$) unless the All-Pairs Shortest Paths problem can be solved in a similar time bound. The latter is a well-known open problem in algorithm design. We consider the all-pairs version of the problem, and we give a new algorithm to find…
We present improved deterministic algorithms for approximating shortest paths in the Congested Clique model of distributed computing. We obtain $poly(\log\log n)$-round algorithms for the following problems in unweighted undirected $n$-vertex graphs: -- $(1+ε)$-approximation of multi-source shortest paths (MSSP) from $O(\sqrt{n})$ sources. -- $(2+ε)$-approximation of all pairs shortest paths (APSP). -- $(1+ε,β)$-approximation of APSP where $β=O(\frac{\log\log n}ε)^{\log\log n}$. These bounds improve exponentially over the state-of-the-art poly-logarithmic bounds due to [Censor-Hillel et al., P…
We study the problem of minimizing overall trip time for battery electric vehicles in road networks. As battery capacity is limited, stops at charging stations may be inevitable. Careful route planning is crucial, since charging stations are scarce and recharging is time-consuming. We extend the Constrained Shortest Path problem for electric vehicles with realistic models of charging stops, including varying charging power and battery swapping stations. While the resulting problem is NP-hard, we propose a combination of algorithmic techniques to achieve good performance in practice. Extensive …
Fine-grained reductions have established equivalences between many core problems with $\tilde{O}(n^3)$-time algorithms on $n$-node weighted graphs, such as Shortest Cycle, All-Pairs Shortest Paths (APSP), Radius, Replacement Paths, Second Shortest Paths, and so on. These problems also have $\tilde{O}(mn)$-time algorithms on $m$-edge $n$-node weighted graphs, and such algorithms have wider applicability. Are these $mn$ bounds optimal when $m \ll n^2$? Starting from the hypothesis that the minimum weight $(2\ell+1)$-Clique problem in edge weighted graphs requires $n^{2\ell+1-o(1)}$ time, we prov…
In this paper we study a variant of the shortest path problem in graphs: given a weighted graph G and vertices s and t, and given a set X of forbidden paths in G, find a shortest s-t path P such that no path in X is a subpath of P. Path P is allowed to repeat vertices and edges. We call each path in X an exception, and our desired path a shortest exception-avoiding path. We formulate a new version of the problem where the algorithm has no a priori knowledge of X, and finds out about an exception x in X only when a path containing x fails. This situation arises in computing shortest paths in op…
National University of Singapore（新加坡国立大学）；École polytechnique fédérale de Lausanne（洛桑联邦理工学院）；Ben-Gurion University of the Negev（内盖夫本-古里安大学）；Ariel University（阿里埃勒大学）
Reconfiguring two shortest paths in a graph means modifying one shortest path to the other by changing one vertex at a time so that all the intermediate paths are also shortest paths. This problem has several natural applications, namely: (a) revamping road networks, (b) rerouting data packets in synchronous multiprocessing setting, (c) the shipping container stowage problem, and (d) the train marshalling problem. When modelled as graph problems, (a) is the most general case while (b), (c) and (d) are restrictions to different graph classes. We show that (a) is intractable, even for relaxed va…
For a string $S$, a palindromic substring $S[i..j]$ is said to be a \emph{shortest unique palindromic substring} ($\mathit{SUPS}$) for an interval $[s, t]$ in $S$, if $S[i..j]$ occurs exactly once in $S$, the interval $[i, j]$ contains $[s, t]$, and every palindromic substring containing $[s, t]$ which is shorter than $S[i..j]$ occurs at least twice in $S$. In this paper, we study the problem of answering $\mathit{SUPS}$ queries on run-length encoded strings. We show how to preprocess a given run-length encoded string $\mathit{RLE}_{S}$ of size $m$ in $O(m)$ space and $O(m \log σ_{\mathit{RLE}…
We consider the all pairs all shortest paths (APASP) problem, which maintains all of the multiple shortest paths for every vertex pair in a directed graph $G=(V,E)$ with a positive real weight on each edge. We present two fully dynamic algorithms for this problem in which an update supports either weight increases or weight decreases on a subset of edges incident to a vertex. Our first algorithm runs in amortized $O({ν^*}^2 \cdot \log^3 n)$ time per update, where $n = |V|$, and $ν^*$ bounds the number of edges that lie on shortest paths through any single vertex. Our APASP algorithm leads to t…
In this paper, we study a set of combinatorial optimization problems on weighted graphs: the shortest path problem with negative weights, the weighted perfect bipartite matching problem, the unit-capacity minimum-cost maximum flow problem and the weighted perfect bipartite $b$-matching problem under the assumption that $\Vert b\Vert_1=O(m)$. We show that each one of these four problems can be solved in $\tilde{O}(m^{10/7}\log W)$ time, where $W$ is the absolute maximum weight of an edge in the graph, which gives the first in over 25 years polynomial improvement in their sparse-graph time compl…
We study a constrained shortest path problem in group-labeled graphs with nonnegative edge length, called the shortest non-zero path problem. Depending on the group in question, this problem includes two types of tractable variants in undirected graphs: one is the parity-constrained shortest path/cycle problem, and the other is computing a shortest noncontractible cycle in surface-embedded graphs. For the shortest non-zero path problem with respect to finite abelian groups, Kobayashi and Toyooka (2017) proposed a randomized, pseudopolynomial-time algorithm via permanent computation. For a slig…
We consider the parity variants of basic problems studied in fine-grained complexity. We show that finding the exact solution is just as hard as finding its parity (i.e. if the solution is even or odd) for a large number of classical problems, including All-Pairs Shortest Paths (APSP), Diameter, Radius, Median, Second Shortest Path, Maximum Consecutive Subsums, Min-Plus Convolution, and $0/1$-Knapsack. A direct reduction from a problem to its parity version is often difficult to design. Instead, we revisit the existing hardness reductions and tailor them in a problem-specific way to the parity…
This paper explores the notion of approximate data structures, which return approximately correct answers to queries, but run faster than their exact counterparts. The paper describes approximate variants of the van Emde Boas data structure, which support the same dynamic operations as the standard van Emde Boas data structure (min, max, successor, predecessor, and existence queries, as well as insertion and deletion), except that answers to queries are approximate. The variants support all operations in constant time provided the performance guarantee is 1+1/polylog(n), and in O(loglogn) time…
Computing shortest paths is one of the central problems in the theory of distributed computing. For the last few years, substantial progress has been made on the approximate single source shortest paths problem, culminating in an algorithm of Becker et al. [DISC'17] which deterministically computes $(1+o(1))$-approximate shortest paths in $\tilde O(D+\sqrt n)$ time, where $D$ is the hop-diameter of the graph. Up to logarithmic factors, this time complexity is optimal, matching the lower bound of Elkin [STOC'04]. The question of exact shortest paths however saw no algorithmic progress for decad…
We study two variants of the shortest path problem. Given an integer k, the k-color-constrained and the k-interchange-constrained shortest path problems, respectively seek a shortest path that uses no more than k colors and one that makes no more than k - 1 alternations of colors. We show that the former problem is NP-hard, when the latter is tractable. The study of these problems is motivated by some limitations in the use of diameter-based metrics to evaluate the topological structure of transit networks. We notably show that indicators such as the diameter or directness of a transit network…
We describe a new forward-backward variant of Dijkstra's and Spira's Single-Source Shortest Paths (SSSP) algorithms. While essentially all SSSP algorithm only scan edges forward, the new algorithm scans some edges backward. The new algorithm assumes that edges in the outgoing and incoming adjacency lists of the vertices appear in non-decreasing order of weight. (Spira's algorithm makes the same assumption about the outgoing adjacency lists, but does not use incoming adjacency lists.) The running time of the algorithm on a complete directed graph on $n$ vertices with independent exponential edg…
In this paper, we study the problem of computing Euclidean geodesic centers of a polygonal domain $\mathcal{P}$ with a total of $n$ vertices. We discover many interesting observations. We give a necessary condition for a point being a geodesic center. We show that there is at most one geodesic center among all points of $\mathcal{P}$ that have topologically-equivalent shortest path maps. This implies that the total number of geodesic centers is bounded by the combinatorial size of the shortest path map equivalence decomposition of $\mathcal{P}$, which is known to be $O(n^{10})$. One key observ…
The quadratic shortest path problem (QSPP) is \textcolor{black}{the problem of finding a path with prespecified start vertex $s$ and end vertex $t$ in a digraph} such that the sum of weights of arcs and the sum of interaction costs over all pairs of arcs on the path is minimized. We first consider a variant of the QSPP known as the adjacent QSPP. It was recently proven that the adjacent QSPP on cyclic digraphs cannot be approximated unless P=NP. Here, we give a simple proof for the same result. We also show that if the quadratic cost matrix is a symmetric weak sum matrix \textcolor{black}{ and…
The distributed single-source shortest paths problem is one of the most fundamental and central problems in the message-passing distributed computing. Classical Bellman-Ford algorithm solves it in $O(n)$ time, where $n$ is the number of vertices in the input graph $G$. Peleg and Rubinovich (FOCS'99) showed a lower bound of $\tildeΩ(D + \sqrt{n})$ for this problem, where $D$ is the hop-diameter of $G$. Whether or not this problem can be solved in $o(n)$ time when $D$ is relatively small is a major notorious open question. Despite intensive research \cite{LP13,N14,HKN15,EN16,BKKL16} that yielded…
In this note, we consider the complexity of maintaining the longest increasing subsequence (LIS) of an array under (i) inserting an element, and (ii) deleting an element of an array. We show that no algorithm can support queries and updates in time $\mathcal{O}(n^{1/2-ε})$ and $\mathcal{O}(n^{1/3-ε})$ for the dynamic LIS problem, for any constant $ε>0$, when the elements are weighted or the algorithm supports 1D-queries (on subarrays), respectively, assuming the All-Pairs Shortest Paths (APSP) conjecture or the Online Boolean Matrix-Vector Multiplication (OMv) conjecture. The main idea in our …
We describe a variant of the Bellman-Ford algorithm for single-source shortest paths in graphs with negative edges but no negative cycles that randomly permutes the vertices and uses this randomized order to process the vertices within each pass of the algorithm. The modification reduces the worst-case expected number of relaxation steps of the algorithm, compared to the previously-best variant by Yen (1970), by a factor of 2/3 with high probability. We also use our high probability bound to add negative cycle detection to the randomized algorithm.
Delft University of Technology（代尔夫特理工大学）；University College Cork（科克大学学院）
We present two new and efficient algorithms for computing all-pairs shortest paths. The algorithms operate on directed graphs with real (possibly negative) weights. They make use of directed path consistency along a vertex ordering d. Both algorithms run in O(n^2 w_d) time, where w_d is the graph width induced by this vertex ordering. For graphs of constant treewidth, this yields O(n^2) time, which is optimal. On chordal graphs, the algorithms run in O(nm) time. In addition, we present a variant that exploits graph separators to arrive at a run time of O(n w_d^2 + n^2 s_d) on general graphs, w…
We introduce a variant of the capacitated vehicle routing problem that is encountered in sensor networks for scientific data collection. Consider an undirected graph $G=(V \cup \{\mathbf{sink}\},E)$. Each vertex $v \in V$ holds a constant-sized reading normalized to 1 byte that needs to be communicated to the $\mathbf{sink}$. The communication protocol is defined such that readings travel in packets. The packets have a capacity of $k$ bytes. We define a {\em packet hop} to be the communication of a packet from a vertex to its neighbor. Each packet hop drains one unit of energy and therefore, w…
Given a graph $G$ cellularly embedded on a surface $Σ$ of genus $g$, a cut graph is a subgraph of $G$ such that cutting $Σ$ along $G$ yields a topological disk. We provide a fixed parameter tractable approximation scheme for the problem of computing the shortest cut graph, that is, for any $\varepsilon >0$, we show how to compute a $(1+ \varepsilon)$ approximation of the shortest cut graph in time $f(\varepsilon, g)n^3$. Our techniques first rely on the computation of a spanner for the problem using the technique of brick decompositions, to reduce the problem to the case of bounded tree-width.…
We analyze two classic variants of the Traveling Salesman Problem using the toolkit of fine-grained complexity. Our first set of results is motivated by the Bitonic TSP problem: given a set of $n$ points in the plane, compute a shortest tour consisting of two monotone chains. It is a classic dynamic-programming exercise to solve this problem in $O(n^2)$ time. While the near-quadratic dependency of similar dynamic programs for Longest Common Subsequence and Discrete Frechet Distance has recently been proven to be essentially optimal under the Strong Exponential Time Hypothesis, we show that bit…
In this thesis, we address the problem of identifying and quantifying variants (alternative splicing and genomic polymorphism) in RNA-seq data when no reference genome is available, without assembling the full transcripts. Based on the fundamental idea that each variant corresponds to a recognizable pattern, a bubble, in a de Bruijn graph constructed from the RNA-seq reads, we propose a general model for all variants in such graphs. We then introduce an exact method, called KisSplice, to extract alternative splicing events. Finally, we show that it enables to identify more correct events than …
