arXivDaily arXiv每日学术速递 周一至周五更新
arXiv 2102.01620cond-mat.mtrl-sci
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AlphaCrystal:基于接触图的深度学习晶体结构预测

AlphaCrystal: Contact map based crystal structure prediction using deep learning

Jianjun Hu, Yong Zhao, Qin Li, Yuqi Song, Rongzhi Dong, Wenhui Yang, Edirisuriya MD Siriwardane

AI总结:

针对传统晶体结构预测算法难以利用已知结构深度知识的问题,提出AlphaCrystal算法,结合深度残差网络预测接触图、遗传算法重建结构,能提升预测效率并可处理较大体系,是首类基于神经网络的相关方法。

摘要:

晶体结构预测是材料科学中尚未解决的核心问题之一。传统上,该问题被建模为全局优化问题:仅给定材料成分或化学体系时,将全局搜索算法与第一性原理自由能计算相结合,以预测基态晶体结构。这类从头算算法通常无法利用大量已知晶体结构中蕴含的原子构型隐式物理化学规则或几何约束(深度知识)。受深度学习推动蛋白质结构预测取得突破的启发,本文提出AlphaCrystal——一种晶体结构预测算法,它结合深度残差神经网络模型学习深度知识,以指导预测目标晶体材料的原子接触图,随后利用遗传算法重建其三维晶体结构。基于一组选定基准晶体材料的实验表明,AlphaCrystal算法能够预测出接近真实结构的晶体结构。该算法还可通过预测并利用预测得到的接触图加快晶体结构预测进程,因此具备处理相对较大体系的潜力。我们认为,这种基于深度学习、从现有材料结构中学习的从头算晶体结构预测方法,可用于拓展当前晶体结构预测的实践规模。据我们所知,AlphaCrystal是首个基于神经网络的晶体结构接触图预测算法,也是首个可从材料成分直接重建晶体结构的方法,其结果可通过DFT计算进一步优化。

英文摘要:

Crystal structure prediction is one of the major unsolved problems in materials science. Traditionally, this problem is formulated as a global optimization problem for which global search algorithms are combined with first principle free energy calculations to predict the ground-state crystal structure given only a material composition or a chemical system. These ab initio algorithms usually cannot exploit a large amount of implicit physicochemical rules or geometric constraints (deep knowledge) of atom configurations embodied in a large number of known crystal structures. Inspired by the deep learning enabled breakthrough in protein structure prediction, herein we propose AlphaCrystal, a crystal structure prediction algorithm that combines a deep residual neural network model that learns deep knowledge to guide predicting the atomic contact map of a target crystal material followed by reconstructing its 3D crystal structure using genetic algorithms. Based on the experiments of a selected set of benchmark crystal materials, we show that our AlphaCrystal algorithm can predict structures close to the ground truth structures. It can also speed up the crystal structure prediction process by predicting and exploiting the predicted contact map so that it has the potential to handle relatively large systems. We believe that our deep learning based ab initio crystal structure prediction method that learns from existing material structures can be used to scale up current crystal structure prediction practice. To our knowledge, AlphaCrystal is the first neural network based algorithm for crystal structure contact map prediction and the first method for directly reconstructing crystal structures from materials composition, which can be further optimized by DFT calculations.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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