Finding meaningful communities - subnetworks of interest within a large scale network - is a problem with a variety of applications. Most existing work towards community detection focuses on a single network. However, many real-life applications naturally yield what we refer to as Triple Networks. Triple Networks are comprised of two networks, and the network of bipartite connections between their nodes. In this paper, we formulate and investigate the problem of finding Connected-Dense-Connected subgraph (CDC), a subnetwork which has the largest density in the bipartite network and whose sets of end points within each network induce connected subnetworks. These patterns represent communities based on the bipartite association between the networks. To our knowledge, such patterns cannot be detected by existing algorithms for a single network or heterogeneous networks. We show that finding CDC subgraphs is NP-hard and develop novel heuristics to obtain feasible solutions, the fastest of which is O(nlogn+m) with n nodes and m edges. We also study different variations of the CDC subgraphs. We perform experiments on a variety of real and synthetic Triple Networks to evaluate the effectiveness and efficiency of the developed methods. Employing these heuristics, we demonstrate how to identify communities of similar opinions and research interests, and factors influencing communities.
Discovering dense subgraphs and understanding the relations among them is a fundamental problem in graph mining. We want to not only identify dense subgraphs, but also build a hierarchy among them (e.g., larger but sparser subgraphs formed by two smaller dense subgraphs). Peeling algorithms (k-core, k-truss, and nucleus decomposition) have been effective to locate many dense subgraphs. However, constructing a hierarchical representation of density structure, even correctly computing the connected k-cores and k-trusses, have been mostly overlooked. Keeping track of connected components during p…
Finding dense substructures in a graph is a fundamental graph mining operation, with applications in bioinformatics, social networks, and visualization to name a few. Yet most standard formulations of this problem (like clique, quasiclique, k-densest subgraph) are NP-hard. Furthermore, the goal is rarely to find the "true optimum", but to identify many (if not all) dense substructures, understand their distribution in the graph, and ideally determine relationships among them. Current dense subgraph finding algorithms usually optimize some objective, and only find a few such subgraphs without p…
Dense subgraph discovery is a key primitive in many graph mining applications, such as detecting communities in social networks and mining gene correlation from biological data. Most studies on dense subgraph mining only deal with one graph. However, in many applications, we have more than one graph describing relations among a same group of entities. In this paper, given two graphs sharing the same set of vertices, we investigate the problem of detecting subgraphs that contrast the most with respect to density. We call such subgraphs Density Contrast Subgraphs, or DCS in short. Two widely use…
Dense subgraph discovery is an important primitive in graph mining, which has a wide variety of applications in diverse domains. In the densest subgraph problem, given an undirected graph $G=(V,E)$ with an edge-weight vector $w=(w_e)_{e\in E}$, we aim to find $S\subseteq V$ that maximizes the density, i.e., $w(S)/|S|$, where $w(S)$ is the sum of the weights of the edges in the subgraph induced by $S$. Although the densest subgraph problem is one of the most well-studied optimization problems for dense subgraph discovery, there is an implicit strong assumption; it is assumed that the weights of…
Computing the densest subgraph is a primitive graph operation with critical applications in detecting communities, events, and anomalies in biological, social, Web, and financial networks. In this paper, we study the novel problem of Most Probable Densest Subgraph (MPDS) discovery in uncertain graphs: Find the node set that is the most likely to induce a densest subgraph in an uncertain graph. We further extend our problem by considering various notions of density, e.g., clique and pattern densities, studying the top-k MPDSs, and finding the node set with the largest containment probability wi…
Finding dense bipartite subgraphs and detecting the relations among them is an important problem for affiliation networks that arise in a range of domains, such as social network analysis, word-document clustering, the science of science, internet advertising, and bioinformatics. However, most dense subgraph discovery algorithms are designed for classic, unipartite graphs. Subsequently, studies on affiliation networks are conducted on the co-occurrence graphs (e.g., co-author and co-purchase) that project the bipartite structure to a unipartite structure by connecting two entities if they shar…
A central problem in graph mining is finding dense subgraphs, with several applications in different fields, a notable example being identifying communities. While a lot of effort has been put on the problem of finding a single dense subgraph, only recently the focus has been shifted to the problem of finding a set of densest subgraphs. Some approaches aim at finding disjoint subgraphs, while in many real-world networks communities are often overlapping. An approach introduced to find possible overlapping subgraphs is the Top-k Overlapping Densest Subgraphs problem. For a given integer k >= 1,…
Dense subgraph discovery is an important graph-mining primitive with a variety of real-world applications. One of the most well-studied optimization problems for dense subgraph discovery is the densest subgraph problem, where given an edge-weighted undirected graph $G=(V,E,w)$, we are asked to find $S\subseteq V$ that maximizes the density $d(S)$, i.e., half the weighted average degree of the induced subgraph $G[S]$. This problem can be solved exactly in polynomial time and well-approximately in almost linear time. However, a densest subgraph has a structural drawback, namely, the subgraph may…
In the densest subgraph problem, given a weighted undirected graph $G(V,E,w)$, with non-negative edge weights, we are asked to find a subset of nodes $S\subseteq V$ that maximizes the degree density $w(S)/|S|$, where $w(S)$ is the sum of the edge weights induced by $S$. This problem is a well studied problem, known as the {\em densest subgraph problem}, and is solvable in polynomial time. But what happens when the edge weights are negative? Is the problem still solvable in polynomial time? Also, why should we care about the densest subgraph problem in the presence of negative weights? In this …
In this paper we study the problem of discovering a timeline of events in a temporal network. We model events as dense subgraphs that occur within intervals of network activity. We formulate the event-discovery task as an optimization problem, where we search for a partition of the network timeline into k non-overlapping intervals, such that the intervals span subgraphs with maximum total density. The output is a sequence of dense subgraphs along with corresponding time intervals, capturing the most interesting events during the network lifetime. A naive solution to our optimization problem ha…
Given a dynamic network, where edges appear and disappear over time, we are interested in finding sets of edges that have similar temporal behavior and form a dense subgraph. Formally, we define the problem as the enumeration of the maximal subgraphs that satisfy specific density and similarity thresholds. To measure the similarity of the temporal behavior, we use the correlation between the binary time series that represent the activity of the edges. For the density, we study two variants based on the average degree. For these problem variants we enumerate the maximal subgraphs and compute a …
Finding dense subgraphs of a large graph is a standard problem in graph mining that has been studied extensively both for its theoretical richness and its many practical applications. In this paper we introduce a new family of dense subgraph objectives, parameterized by a single parameter $p$, based on computing generalized means of degree sequences of a subgraph. Our objective captures both the standard densest subgraph problem and the maximum $k$-core as special cases, and provides a way to interpolate between and extrapolate beyond these two objectives when searching for other notions of de…
Network analysis has played a key role in knowledge discovery and data mining. In many real-world applications in recent years, we are interested in mining multilayer networks, where we have a number of edge sets called layers, which encode different types of connections and/or time-dependent connections over the same set of vertices. Among many network analysis techniques, dense subgraph discovery, aiming to find a dense component in a network, is an essential primitive with a variety of applications in diverse domains. In this paper, we introduce a novel optimization model for dense subgraph…
The University of Tokyo（东京大学）；RIKEN AIP（理化学研究所人工智能研究中心）
Dense subgraph discovery aims to find a dense component in edge-weighted graphs. This is a fundamental graph-mining task with a variety of applications and thus has received much attention recently. Although most existing methods assume that each individual edge weight is easily obtained, such an assumption is not necessarily valid in practice. In this paper, we introduce a novel learning problem for dense subgraph discovery in which a learner queries edge subsets rather than only single edges and observes a noisy sum of edge weights in a queried subset. For this problem, we first propose a po…
Community detection is one of the most investigated problems in the field of complex networks. Although several methods were proposed, there is still no precise definition of communities. As a step towards a definition, I highlight two necessary properties of communities, separation and internal cohesion, the latter being a new concept. I propose a local method of community detection based on two-dimensional local optimization, which I tested on common benchmarks and on the word association database.
Finding the dense regions of a graph and relations among them is a fundamental problem in network analysis. Core and truss decompositions reveal dense subgraphs with hierarchical relations. The incremental nature of algorithms for computing these decompositions and the need for global information at each step of the algorithm hinders scalable parallelization and approximations since the densest regions are not revealed until the end. In a previous work, Lu et al. proposed to iteratively compute the $h$-indices of neighbor vertex degrees to obtain the core numbers and prove that the convergence…
Many graph mining applications rely on detecting subgraphs which are near-cliques. There exists a dichotomy between the results in the existing work related to this problem: on the one hand the densest subgraph problem (DSP) which maximizes the average degree over all subgraphs is solvable in polynomial time but for many networks fails to find subgraphs which are near-cliques. On the other hand, formulations that are geared towards finding near-cliques are NP-hard and frequently inapproximable due to connections with the Maximum Clique problem. In this work, we propose a formulation which comb…
Dense subgraph discovery is a fundamental problem in graph mining with a wide range of applications \cite{gionis2015dense}. Despite a large number of applications ranging from computational neuroscience to social network analysis, that take as input a {\em dual} graph, namely a pair of graphs on the same set of nodes, dense subgraph discovery methods focus on a single graph input with few notable exceptions \cite{semertzidis2019finding,charikar2018finding,reinthal2016finding,jethava2015finding}. In this work, we focus the following problem: given a pair of graphs $G,H$ on the same set of nodes…
Dense regions in networks are an indicator of interesting and unusual information. However, most existing methods only consider simple, undirected, unweighted networks. Complex networks in the real-world often have rich information though: edges are asymmetrical and nodes/edges have categorical and numerical attributes. Finding dense subgraphs in such networks in accordance with this rich information is an important problem with many applications. Furthermore, most existing algorithms ignore the higher-order relationships (i.e., motifs) among the nodes. Motifs are shown to be helpful for dense…
Detecting dense subgraphs from large graphs is a core component in many applications, ranging from social networks mining, bioinformatics. In this paper, we focus on mining dense subgraphs in a bipartite graph. The work is motivated by the task of detecting synchronized behavior that can often be formulated as mining a bipartite graph formed by the source nodes (followers, customers) and target nodes (followees, products, etc.) for malicious patterns. We introduce a new restricted biclique problem, Maximal Half Isolated Biclique (MHI Biclique), and show that the problem finds immediate applica…
Given a task $\mathcal{T}$, a set of experts $V$ with multiple skills and a social network $G(V, W)$ reflecting the compatibility among the experts, team formation is the problem of identifying a team $C \subseteq V$ that is both competent in performing the task $\mathcal{T}$ and compatible in working together. Existing methods for this problem make too restrictive assumptions and thus cannot model practical scenarios. The goal of this paper is to consider the team formation problem in a realistic setting and present a novel formulation based on densest subgraphs. Our formulation allows modeli…
The use of network based approaches to model and analyse large datasets is currently a growing research field. For instance in biology and medicine, networks are used to model interactions among biological molecules as well as relations among patients. Similarly, data coming from social networks can be trivially modelled by using graphs. More recently, the use of dual networks gained the attention of researchers. A dual network model uses a pair of graphs to model a scenario in which one of the two graphs is usually unweighted (a network representing physical associations among nodes) while th…
Graphs form a natural model for relationships and interactions between entities, for example, between people in social and cooperation networks, servers in computer networks, or tags and words in documents and tweets. But, which of these relationships or interactions are the most lasting ones? In this paper, we study the following problem: given a set of graph snapshots, which may correspond to the state of an evolving graph at different time instances, identify the set of nodes that are the most densely connected in all snapshots. We call this problem the Best Friends For Ever (BFF) problem. …
