The estimation of covariance matrices of multiple classes with limited training data is a difficult problem. The sample covariance matrix (SCM) is known to perform poorly when the number of variables is large compared to the available number of samples. In order to reduce the mean squared error (MSE) of the SCM, regularized (shrinkage) SCM estimators are often used. In this work, we consider regularized SCM (RSCM) estimators for multiclass problems that couple together two different target matrices for regularization: the pooled (average) SCM of the classes and the scaled identity matrix. Regularization toward the pooled SCM is beneficial when the population covariances are similar, whereas regularization toward the identity matrix guarantees that the estimators are positive definite. We derive the MSE optimal tuning parameters for the estimators as well as propose a method for their estimation under the assumption that the class populations follow (unspecified) elliptical distributions with finite fourth-order moments. The MSE performance of the proposed coupled RSCMs are evaluated with simulations and in a regularized discriminant analysis (RDA) classification set-up on real data. The results based on three different real data sets indicate comparable performance to cross-validation but with a significant speed-up in computation time.
The main theme of this paper is a modification of the likelihood ratio test (LRT) for testing high dimensional covariance matrix. Recently, the correct asymptotic distribution of the LRT for a large-dimensional case (the case $p/n$ approaches to a constant $γ\in (0,1]$) is specified by researchers. The correct procedure is named as corrected LRT. Despite of its correction, the corrected LRT is a function of sample eigenvalues that are suffered from redundant variability from high dimensionality and, subsequently, still does not have full power in differentiating hypotheses on the covariance ma…
Regularized M-estimators are used in diverse areas of science and engineering to fit high-dimensional models with some low-dimensional structure. Usually the low-dimensional structure is encoded by the presence of the (unknown) parameters in some low-dimensional model subspace. In such settings, it is desirable for estimates of the model parameters to be \emph{model selection consistent}: the estimates also fall in the model subspace. We develop a general framework for establishing consistency and model selection consistency of regularized M-estimators and show how it applies to some special c…
Missing data estimation is an important challenge with high-dimensional data arranged in the form of a matrix. Typically this data matrix is transposable, meaning that either the rows, columns or both can be treated as features. To model transposable data, we present a modification of the matrix-variate normal, the mean-restricted matrix-variate normal, in which the rows and columns each have a separate mean vector and covariance matrix. By placing additive penalties on the inverse covariance matrices of the rows and columns, these so-called transposable regularized covariance models allow for…
In functional data analysis (FDA), covariance function is fundamental not only as a critical quantity for understanding elementary aspects of functional data but also as an indispensable ingredient for many advanced FDA methods. This paper develops a new class of nonparametric covariance function estimators in terms of various spectral regularizations of an operator associated with a reproducing kernel Hilbert space. Despite their nonparametric nature, the covariance estimators are automatically positive semi-definite without any additional modification steps. An unconventional representer the…
The Minimum Covariance Determinant (MCD) approach robustly estimates the location and scatter matrix using the subset of given size with lowest sample covariance determinant. Its main drawback is that it cannot be applied when the dimension exceeds the subset size. We propose the Minimum Regularized Covariance Determinant (MRCD) approach, which differs from the MCD in that the scatter matrix is a convex combination of a target matrix and the sample covariance matrix of the subset. A data-driven procedure sets the weight of the target matrix, so that the regularization is only used when needed.…
In climate and atmospheric research, many phenomena involve more than one meteorological spatial processes covarying in space. To understand how one process is affected by another, maximum covariance analysis (MCA) is commonly applied. However, the patterns obtained from MCA may sometimes be difficult to interpret. In this paper, we propose a regularization approach to promote spatial features in dominant coupled patterns by introducing smoothness and sparseness penalties while accounting for their orthogonalities. We develop an efficient algorithm to solve the resulting optimization problem b…
Covariance matrix tapers have a long history in signal processing and related fields. Examples of applications include autoregressive models (promoting a banded structure) or beamforming (widening the spectral null width associated with an interferer). In this paper, the focus is on high-dimensional setting where the dimension $p$ is high, while the data aspect ratio $n/p$ is low. We propose an estimator called Tabasco (TApered or BAnded Shrinkage COvariance matrix) that shrinks the tapered sample covariance matrix towards a scaled identity matrix. We derive optimal and estimated (data adaptiv…
Recently many regularized estimators of large covariance matrices have been proposed, and the tuning parameters in these estimators are usually selected via cross-validation. However, there is no guideline on the number of folds for conducting cross-validation and there is no comparison between cross-validation and the methods based on bootstrap. Through extensive simulations, we suggest 10-fold cross-validation (nine-tenths for training and one-tenth for validation) be appropriate when the estimation accuracy is measured in the Frobenius norm, while 2-fold cross-validation (half for training …
This paper considers the regularized Tyler's scatter estimator for elliptical distributions, which has received considerable attention recently. Various types of shrinkage Tyler's estimators have been proposed in the literature and proved work effectively in the "small n large p" scenario. Nevertheless, the existence and uniqueness properties of the estimators are not thoroughly studied, and in certain cases the algorithms may fail to converge. In this work, we provide a general result that analyzes the sufficient condition for the existence of a family of shrinkage Tyler's estimators, which q…
In this work we consider the estimation of spatio-temporal covariance matrices in the low sample non-Gaussian regime. We impose covariance structure in the form of a sum of Kronecker products decomposition (Tsiligkaridis et al. 2013, Greenewald et al. 2013) with diagonal correction (Greenewald et al.), which we refer to as DC-KronPCA, in the estimation of multiframe covariance matrices. This paper extends the approaches of (Tsiligkaridis et al.) in two directions. First, we modify the diagonally corrected method of (Greenewald et al.) to include a block Toeplitz constraint imposing temporal st…
One of the major challenges in multivariate analysis is the estimation of population covariance matrix from sample covariance matrix (SCM). Most recent covariance matrix estimators use either shrinkage transformations or asymptotic results from Random Matrix Theory (RMT). Shrinkage techniques help in pulling extreme correlation values towards certain target values whereas tools from RMT help in removing noisy eigenvalues of SCM. Both of these techniques use different approaches to achieve a similar goal which is to remove noisy correlations and add structure to SCM to overcome the bias-varianc…
In this paper, a general class of regularized $M$-estimators of scatter matrix are proposed which are suitable also for low or insufficient sample support (small $n$ and large $p$) problems. The considered class constitutes a natural generalization of $M$-estimators of scatter matrix (Maronna, 1976) and are defined as a solution to a penalized $M$-estimation cost function that depend on a pair $(α,β)$ of regularization parameters. We derive general conditions for uniqueness of the solution using concept of geodesic convexity. Since these conditions do not include Tyler's $M$-estimator, necessa…
We introduce a class of hybrid M-estimators of multivariate scatter which, analogous to the popular spatial sign covariance matrix (SSCM), possess high breakdown points. We also show that the SSCM can be viewed as an extreme member of this class. Unlike the SSCM, but like the regular M-estimators of scatter, this new class of estimators takes into account the shape of the contours of the data cloud for downweighting observations.
This paper considers the banding estimator proposed in Bickel and Levina (2008) for estimation of large covariance matrices. We prove that the banding estimator achieves rate-optimality under the operator norm, for a class of approximately banded covariance matrices, improving the existing results in Bickel and Levina (2008). In addition, we propose a Stein's unbiased risk estimate (Sure)-type approach for selecting the bandwidth for the banding estimator. Simulations indicate that the Sure-tuned banding estimator outperforms competing estimators.
We consider a linear regression model with a spatially correlated error term on a lattice. When estimating coefficients in the linear regression model, the generalized least squares estimator (GLSE) is used if the covariance structures are known. However, the GLSE for large spatial data sets is computationally expensive, because it involves inverting the covariance matrix of error terms from each observations. To reduce the computational complexity, we propose a pseudo best estimator (PBE) using spatial covariance structures approximated by separable covariance functions. We derive the asympto…
Regularized kernel methods such as support vector machines (SVM) and support vector regression (SVR) constitute a broad and flexible class of methods which are theoretically well investigated and commonly used in nonparametric classification and regression problems. As these methods are based on a Tikhonov regularization which is also common in inverse problems, this article investigates the use of regularized kernel methods for inverse problems in a unifying way. Regularized kernel methods are based on the use of reproducing kernel Hilbert spaces (RKHS) which lead to very good computational p…
The application of standard sufficient dimension reduction methods for reducing the dimension space of predictors without losing regression information requires inverting the covariance matrix of the predictors. This has posed a number of challenges especially when analyzing high-dimensional data sets in which the number of predictors $\mathit{p}$ is much larger than number of samples $n,~(n\ll p)$. A new covariance estimator, called the \textit{Maximum Entropy Covariance} (MEC) that addresses loss of covariance information when similar covariance matrices are linearly combined using \textit{M…
Estimating a covariance matrix is an important task in applications where the number of variables is larger than the number of observations. Shrinkage approaches for estimating a high-dimensional covariance matrix are often employed to circumvent the limitations of the sample covariance matrix. A new family of nonparametric Stein-type shrinkage covariance estimators is proposed whose members are written as a convex linear combination of the sample covariance matrix and of a predefined invertible target matrix. Under the Frobenius norm criterion, the optimal shrinkage intensity that defines the…
We develop a new estimator of the inverse covariance matrix for high-dimensional multivariate normal data using the horseshoe prior. The proposed graphical horseshoe estimator has attractive properties compared to other popular estimators, such as the graphical lasso and graphical Smoothly Clipped Absolute Deviation (SCAD). The most prominent benefit is that when the true inverse covariance matrix is sparse, the graphical horseshoe provides estimates with small information divergence from the true sampling distribution. The posterior mean under the graphical horseshoe prior can also be almost …
In this work, we study the positive definiteness (PDness) problem in covariance matrix estimation. For high dimensional data, many regularized estimators are proposed under structural assumptions on the true covariance matrix including sparsity. They are shown to be asymptotically consistent and rate-optimal in estimating the true covariance matrix and its structure. However, many of them do not take into account the PDness of the estimator and produce a non-PD estimate. To achieve the PDness, researchers consider additional regularizations (or constraints) on eigenvalues, which make both the …
The Doubly Robust (DR) estimation of ATE can be carried out in 2 steps, where in the first step, the treatment and outcome are modeled, and in the second step the predictions are inserted into the DR estimator. The model misspecification in the first step has led researchers to utilize Machine Learning algorithms instead of parametric algorithms. However, existence of strong confounders and/or Instrumental Variables (IVs) can lead the complex ML algorithms to provide perfect predictions for the treatment model which can violate the positivity assumption and elevate the variance of DR estimator…
We introduce a new sparse estimator of the covariance matrix for high-dimensional models in which the variables have a known ordering. Our estimator, which is the solution to a convex optimization problem, is equivalently expressed as an estimator which tapers the sample covariance matrix by a Toeplitz, sparsely-banded, data-adaptive matrix. As a result of this adaptivity, the convex banding estimator enjoys theoretical optimality properties not attained by previous banding or tapered estimators. In particular, our convex banding estimator is minimax rate adaptive in Frobenius and operator nor…
We consider reduced-rank modeling of the white noise covariance matrix in a large dimensional vector autoregressive (VAR) model. We first propose the reduced-rank covariance estimator under the setting where independent observations are available. We derive the reduced-rank estimator based on a latent variable model for the vector observation and give the analytical form of its maximum likelihood estimate. Simulation results show that the reduced-rank covariance estimator outperforms two competing covariance estimators for estimating large dimensional covariance matrices from independent obser…
Estimating spot covariance is an important issue to study, especially with the increasing availability of high-frequency financial data. We study the estimation of spot covariance using a kernel method for high-frequency data. In particular, we consider first the kernel weighted version of realized covariance estimator for the price process governed by a continuous multivariate semimartingale. Next, we extend it to the threshold kernel estimator of the spot covariances when the underlying price process is a discontinuous multivariate semimartingale with finite activity jumps. We derive the asy…
In this paper, we analyse the recovery properties of nonconvex regularized $M$-estimators, under the assumption that the true parameter is of soft sparsity. In the statistical aspect, we establish the recovery bound for any stationary point of the nonconvex regularized $M$-estimator, under restricted strong convexity and some regularity conditions on the loss function and the regularizer, respectively. In the algorithmic aspect, we slightly decompose the objective function and then solve the nonconvex optimization problem via the proximal gradient method, which is proved to achieve a linear co…
We study the estimation of a high dimensional approximate factor model in the presence of both cross sectional dependence and heteroskedasticity. The classical method of principal components analysis (PCA) does not efficiently estimate the factor loadings or common factors because it essentially treats the idiosyncratic error to be homoskedastic and cross sectionally uncorrelated. For efficient estimation it is essential to estimate a large error covariance matrix. We assume the model to be conditionally sparse, and propose two approaches to estimating the common factors and factor loadings; b…
Estimating a low rank matrix from its linear measurements is a problem of central importance in contemporary statistical analysis. The choice of tuning parameters for estimators remains an important challenge from a theoretical and practical perspective. To this end, Stein's Unbiased Risk Estimate (SURE) framework provides a well-grounded statistical framework for degrees of freedom estimation. In this paper, we use the SURE framework to obtain degrees of freedom estimates for a general class of spectral regularized matrix estimators, generalizing beyond the class of estimators that have been …
This paper considers the problem of estimating a high-dimensional (HD) covariance matrix when the sample size is smaller, or not much larger, than the dimensionality of the data, which could potentially be very large. We develop a regularized sample covariance matrix (RSCM) estimator which can be applied in commonly occurring sparse data problems. The proposed RSCM estimator is based on estimators of the unknown optimal (oracle) shrinkage parameters that yield the minimum mean squared error (MMSE) between the RSCM and the true covariance matrix when the data is sampled from an unspecified elli…
In the high dimensional Stochastic Blockmodel for a random network, the number of clusters (or blocks) K grows with the number of nodes N. Two previous studies have examined the statistical estimation performance of spectral clustering and the maximum likelihood estimator under the high dimensional model; neither of these results allow K to grow faster than N^{1/2}. We study a model where, ignoring log terms, K can grow proportionally to N. Since the number of clusters must be smaller than the number of nodes, no reasonable model allows K to grow faster; thus, our asymptotic results are the "h…
In this paper we consider estimation of sparse covariance matrices and propose a thresholding procedure which is adaptive to the variability of individual entries. The estimators are fully data driven and enjoy excellent performance both theoretically and numerically. It is shown that the estimators adaptively achieve the optimal rate of convergence over a large class of sparse covariance matrices under the spectral norm. In contrast, the commonly used universal thresholding estimators are shown to be sub-optimal over the same parameter spaces. Support recovery is also discussed. The adaptive …
We consider a class of semi-parametric dynamic models with strong white noise errors. This class of processes includes the standard Vector Autoregressive (VAR) model, the nonfundamental structural VAR, the mixed causal-noncausal models, as well as nonlinear dynamic models such as the (multivariate) ARCH-M model. For estimation of processes in this class, we propose the Generalized Covariance (GCov) estimator, which is obtained by minimizing a residual-based multivariate portmanteau statistic as an alternative to the Generalized Method of Moments. We derive the asymptotic properties of the GCov…
Quadratic and Linear Discriminant Analysis (QDA/LDA) are the most often applied classification rules under normality. In QDA, a separate covariance matrix is estimated for each group. If there are more variables than observations in the groups, the usual estimates are singular and cannot be used anymore. Assuming homoscedasticity, as in LDA, reduces the number of parameters to estimate. This rather strong assumption is however rarely verified in practice. Regularized discriminant techniques that are computable in high-dimension and cover the path between the two extremes QDA and LDA have been …
In this paper we propose a new regression interpretation of the Cholesky factor of the covariance matrix, as opposed to the well known regression interpretation of the Cholesky factor of the inverse covariance, which leads to a new class of regularized covariance estimators suitable for high-dimensional problems. Regularizing the Cholesky factor of the covariance via this regression interpretation always results in a positive definite estimator. In particular, one can obtain a positive definite banded estimator of the covariance matrix at the same computational cost as the popular banded estim…
We introduce an estimation method of covariance matrices in a high-dimensional setting, i.e., when the dimension of the matrix, , is larger than the sample size . Specifically, we propose an orthogonally equivariant estimator. The eigenvectors of such estimator are the same as those of the sample covariance matrix. The eigenvalue estimates are obtained from an adjusted profile likelihood function derived by approximating the integral of the density function of the sample covariance matrix over its eigenvectors, which is a challenging problem in its own right. Exact solutions to the approximate…
The problem of estimating a spiked covariance matrix in high dimensions under Frobenius loss, and the parallel problem of estimating the noise in spiked PCA is investigated. We propose an estimator of the noise parameter by minimizing an unbiased estimator of the invariant Frobenius risk using calculus of variations. The resulting estimator is shown, using random matrix theory, to be strongly consistent and essentially asymptotically normal and minimax for the noise estimation problem. We apply the construction to construct a robust spiked covariance matrix estimator with consistent eigenvalue…
This paper considers the problem of estimating the population spectral distribution from a sample covariance matrix in large dimensional situations. We generalize the contour-integral based method in Mestre (2008) and present a local moment estimation procedure. Compared with the original one, the new procedure can be applied successfully to models where the asymptotic clusters of sample eigenvalues generated by different population eigenvalues are not all separate. The proposed estimates are proved to be consistent. Numerical results illustrate the implementation of the estimation procedure a…
The present paper concerns large covariance matrix estimation via composite minimization under the assumption of low rank plus sparse structure. In this approach, the low rank plus sparse decomposition of the covariance matrix is recovered by least squares minimization under nuclear norm plus $l_1$ norm penalization. This paper proposes a new estimator of that family based on an additional least-squares re-optimization step aimed at un-shrinking the eigenvalues of the low rank component estimated at the first step. We prove that such un-shrinkage causes the final estimate to approach the targe…
In practice rarely (if ever) is the spatial covariance known in spatial prediction problems. Often, prediction is performed after estimated spatial covariance parameters are plugged into the prediction equation. The estimated spatial association parameters arealso plugged into the prediction variance of the spatial predictor. However, simply plugging in spatial covariance parameter estimates into the prediction variance of the spatial predictor does not take into account the uncertainty in the true values of the spatial covariance parameters. Therefore the plug-in prediction variance estimate …
As observed by Auderset et al. (2005) and Wiesel (2012), viewing covariance matrices as elements of a Riemannian manifold and using the concept of geodesic convexity provide useful tools for studying M-estimators of multivariate scatter. In this paper, we begin with a mathematically rigorous self-contained overview of Riemannian geometry on the space of symmetric positive definite matrices and of the notion of geodesic convexity. The overview contains both a review as well as new results. In particular, we introduce and utilize first and second order Taylor expansions with respect to geodesic …
A highly popular regularized (shrinkage) covariance matrix estimator is the shrinkage sample covariance matrix (SCM) which shares the same set of eigenvectors as the SCM but shrinks its eigenvalues toward the grand mean of the eigenvalues of the SCM. In this paper, a more general approach is considered in which the SCM is replaced by an M-estimator of scatter matrix and a fully automatic data adaptive method to compute the optimal shrinkage parameter with minimum mean squared error is proposed. Our approach permits the use of any weight function such as Gaussian, Huber's, Tyler's, or t-weight …
We derive an optimal shrinkage sample covariance matrix (SCM) estimator which is suitable for high dimensional problems and when sampling from an unspecified elliptically symmetric distribution. Specifically, we derive the optimal (oracle) shrinkage parameters that obtain the minimum mean-squared error (MMSE) between the shrinkage SCM and the true covariance matrix when sampling from an elliptical distribution. Subsequently, we show how the oracle shrinkage parameters can be consistently estimated under the random matrix theory regime. Simulations show the advantage of the proposed estimator o…
We propose a novel estimation approach for the covariance matrix based on the $l_1$-regularized approximate factor model. Our sparse approximate factor (SAF) covariance estimator allows for the existence of weak factors and hence relaxes the pervasiveness assumption generally adopted for the standard approximate factor model. We prove consistency of the covariance matrix estimator under the Frobenius norm as well as the consistency of the factor loadings and the factors. Our Monte Carlo simulations reveal that the SAF covariance estimator has superior properties in finite samples for low and h…
The thresholding covariance estimator has nice asymptotic properties for estimating sparse large covariance matrices, but it often has negative eigenvalues when used in real data analysis. To simultaneously achieve sparsity and positive definiteness, we develop a positive definite $\ell_1$-penalized covariance estimator for estimating sparse large covariance matrices. An efficient alternating direction method is derived to solve the challenging optimization problem and its convergence properties are established. Under weak regularity conditions, non-asymptotic statistical theory is also establ…
The global minimum-variance portfolio is a typical choice for investors because of its simplicity and broad applicability. Although it requires only one input, namely the covariance matrix of asset returns, estimating the optimal solution remains a challenge. In the presence of high-dimensionality in the data, the sample covariance estimator becomes ill-conditioned and leads to suboptimal portfolios out-of-sample. To address this issue, we review recently proposed efficient estimation methods for the covariance matrix and extend the literature by suggesting a multi-fold cross-validation techni…
We study a group lasso estimator for the multivariate linear regression model that accounts for correlated error terms. A block coordinate descent algorithm is used to compute this estimator. We perform a simulation study with categorical data and multivariate time series data, typical settings with a natural grouping among the predictor variables. Our simulation studies show the good performance of the proposed group lasso estimator compared to alternative estimators. We illustrate the method on a time series data set of gene expressions.
A major problem in numerical weather prediction (NWP) is the estimation of high-dimensional covariance matrices from a small number of samples. Maximum likelihood estimators cannot provide reliable estimates when the overall dimension is much larger than the number of samples. Fortunately, NWP practitioners have found ingenious ways to boost the accuracy of their covariance estimators by leveraging the assumption that the correlations decay with spatial distance. In this work, Bayesian statistics is used to provide a new justification and analysis of the practical NWP covariance estimators. Th…
