Cities have long served as nucleating centers for human development and advancement. Cities have facilitated the spread of both human creativity and human disease, and at the same time, efforts to minimize the spread of disease have influenced the design of cities. The purpose of this paper is to explore the dynamics of epidemics on networks in order to help design a multi-network city of the future aimed at minimizing the spread of epidemics. In order to do this, we start with the SIR model (susceptible, infected, removed) on a network in which nodes represent cities or regions and edges are weighted by flows between regions. Since the goal is to stabilize the zero infections steady state, we linearize the discrete-time SIR model yielding difference equations for the dynamics of infections at each node and then include flows of infections from other nodes. This yields a vector difference equation for the spread of infections. We then generalize the concept of stochastic matrix in order to quantify the dynamics of this update equation. The entries of the update matrix $M$ may vary in time, even discontinuously as flows between nodes are turned on and off. This may yield useful design constraints for a multi-network composed of weak and strong interactions between pairs of nodes representing interactions within and among cities.
Identifying super-spreaders in epidemics is important to suppress the spreading of disease especially when the medical resource is limited.In the modern society, the information on epidemics transmits swiftly through various communication channels which contributes much to the suppression of epidemics. Here we study on the identification of super-spreaders in the information-disease coupled spreading dynamics. Firstly, we find that the centralities in physical contact layer are no longer effective to identify super-spreaders in epidemics, which is due to the suppression effects from the inform…
Models of epidemic spreading on complex networks have attracted great attention among researchers in physics, mathematics, and epidemiology due to their success in predicting and controlling scenarios of epidemic spreading in real-world scenarios. To understand the interplay between epidemic spreading and the topology of a contact network, several outstanding theoretical approaches have been developed. An accurate theoretical approach describing the spreading dynamics must take both the network topology and dynamical correlations into consideration at the expense of increasing the complexity o…
We study geographical effects on the spread of diseases in lattice-embedded scale-free networks. The geographical structure is represented by the connecting probability of two nodes that is related to the Euclidean distance between them in the lattice. By studying the standard Susceptible-Infected model, we found that the geographical structure has great influences on the temporal behavior of epidemic outbreaks and the propagation in the underlying network: the more geographically constrained the network is, the more smoothly the epidemic spreads.
Epidemic spread on networks is one of the most studied dynamics in network science and has important implications in real epidemic scenarios. Nonetheless, the dynamics of real epidemics and how it is affected by the underline structure of the infection channels are still not fully understood. Here we apply the SIR model and study analytically and numerically the epidemic spread on a recently developed spatial modular model imitating the structure of cities in a country. The model assumes that inside a city the infection channels connect many different locations, while the infection channels be…
We study the traffic-driven epidemic spreading on scale-free networks with tunable degree distribution. The heterogeneity of networks is controlled by the exponent $γ$ of power-law degree distribution. It is found that the epidemic threshold is minimized at about $γ=2.2$. Moreover, we find that nodes with larger algorithmic betweenness are more likely to be infected. We expect our work to provide new insights into the effect of network structures on traffic-driven epidemic spreading.
The disease spreading on complex networks is studied in SIR model. Simulations on empirical complex networks reveal two specific regimes of disease spreading: local containment and epidemic outbreak. The variables measuring the extent of disease spreading are in general characterized by a bimodal probability distribution. Phase diagrams of disease spreading for empirical complex networks are introduced. A theoretical model of disease spreading on m-ary tree is investigated both analytically and in simulations. It is shown that the model reproduces qualitative features of phase diagrams of dise…
Bipartite networks are composed of two types of nodes and there are no links between nodes of the same type. Thus the study of epidemic spread and control on such networks is relevant to sexually transmitted diseases (STDs). When entire populations of two types cannot be immunized and the effect of immunization is not perfect, we have to consider the targeted immunization with immunization rates. We derive the epidemic thresholds of SIR and SIS models with immunization and illustrate the results with STDs on heterosexual contact networks.
We consider a standard \textit{susceptible-infected-susceptible} (SIS) model to study behaviors of steady states of epidemic spreading in small-world networks. Using analytical methods and large scale simulations, we recover the usual epidemic behavior with a critical threshold $λ_{c}$ below which infectious diseases die out. Whereas for the spreading rate $λ$ far above $λ_{c}$, it was found that the density of infected individuals $ρ$ as a function of $λ$ has the property $ρ\approx F(K)(\ln λ- \ln λ_{c})$.
In this paper, we study how interactions between populations impact epidemic spread. We extend the classical SEIR model to include both integration-based disease transmission simulation and population flow. Our model differs from existing ones by having a more detailed representation of travel patterns, without losing tractability. This allows us to study the epidemic consequence of inter-regional travel with high fidelity. In particular, we define \emph{travel cadence} as a two-dimensional measure of inter-regional travel, and show that both dimensions modulate epidemic spread. This technical…
It is often useful to represent the infectious dynamics of mobile agents by metapopulation models. In such a model, metapopulations form a static network, and individuals migrate from one metapopulation to another. It is known that heterogeneous degree distributions of metapopulation networks decrease the epidemic threshold above which epidemic spreads can occur. We investigate the combined effect of heterogeneous degree distributions and diffusion on epidemics in metapopulation networks. We show that for arbitrary heterogeneous networks, diffusion suppresses epidemics in the sense of an incre…
A configuration model for epidemic spread, based on a scale-free network, is introduced. We obtain the analytical solutions describing both unstable and stable dynamics of the epidemic spreading, and demonstrate how these regimes can interchange during the epidemic. We apply the model to the COVID-19 case and demonstrate the predictive features of our model.
We investigate the spread of diseases, computer viruses or information on complex networks and also immunization strategies to prevent or control the spread. When an entire population cannot be immunized and the effect of immunization is not perfect, we need the targeted immunization with immunization rate. Under such a circumstance we calculate epidemic thresholds for the SIR and SIS epidemic models. It is shown that, in scale-free networks, the targeted immunization is effective only if the immunization rate is equal to one. We analyze here epidemic spreading on directed complex networks, bu…
This study is concerned with the dynamical behaviors of epidemic spreading over a two-layered interconnected network. Three models in different levels are proposed to describe cooperative spreading processes over the interconnected network, wherein the disease in one network can spread to the other. Theoretical analysis is provided for each model to reveal that the global epidemic threshold in the interconnected network is not larger than the epidemic thresholds for the two isolated layered networks. In particular, in an interconnected homogenous network, detailed theoretical analysis is prese…
In spite of the extensive previous efforts on traffic dynamics and epidemic spreading in complex networks, the problem of traffic-driven epidemic spreading on {\em correlated} networks has not been addressed. Interestingly, we find that the epidemic threshold, a fundamental quantity underlying the spreading dynamics, exhibits a non-monotonic behavior in that it can be minimized for some critical value of the assortativity coefficient, a parameter characterizing the network correlation. To understand this phenomenon, we use the degree-based mean-field theory to calculate the traffic-driven epid…
The dynamics of many epidemic compartmental models for infectious diseases that spread in a single host population present a second-order phase transition. This transition occurs as a function of the infectivity parameter, from the absence of infected individuals to an endemic state. Here, we study this transition, from the perspective of dynamical systems, for a discrete-time compartmental epidemic model known as Microscopic Markov Chain Approach, whose applicability for forecasting future scenarios of epidemic spreading has been proved very useful during the COVID-19 pandemic. We show that t…
Nowadays, the emergence of online services provides various multi-relation information to support the comprehensive understanding of the epidemic spreading process. In this Letter, we consider the edge weights to represent such multi-role relations. In addition, we perform detailed analysis of two representative metrics, outbreak threshold and epidemic prevalence, on SIS and SIR models. Both theoretical and simulation results find good agreements with each other. Furthermore, experiments show that, on fully mixed networks, the weight distribution on edges would not affect the epidemic results …
We propose a novel SIR epidemic model which is driven by the transmission of infection packets in networks. Specifically, infected nodes generate and deliver infection packets causing the spread of the epidemic, while recovered nodes block the delivery of infection packets, and this inhibits the epidemic spreading. The efficient routing protocol governed by a control parameter $α$ is used in the packet transmission. We obtain the maximum instantaneous population of infected nodes, the maximum population of ever infected nodes, as well as the corresponding optimal $α$ through simulation. We fin…
In this paper, we investigate the epidemic spreading for SIR model in weighted scale-free networks with nonlinear infectivity, where the transmission rate in our analytical model is weighted. Concretely, we introduce the infectivity exponent $α$ and the weight exponent $β$ into the analytical SIR model, then examine the combination effects of $α$ and $β$ on the epidemic threshold and phase transition. We show that one can adjust the values of $α$ and $β$ to rebuild the epidemic threshold to a finite value, and it is observed that the steady epidemic prevalence $R$ grows in an exponential form …
We present a modified \emph{susceptible-infected-susceptible} (SIS) model on complex networks, small-world and scale-free, to study epidemic spreading with the effect of time delay which is introduced to the infected phase. Considering the topology of the network, both uniform and degree-dependent delays are studied during the contagion process. We find that the existence of time delay will enhance both outbreaks and prevalence of infectious diseases in the network.
We investigate the effects of modular and temporal connectivity patterns on epidemic spreading. To this end, we introduce and analytically characterise a model of time-varying networks with tunable modularity. Within this framework, we study the epidemic size of Susceptible-Infected-Recovered, SIR, models and the epidemic threshold of Susceptible-Infected-Susceptible, SIS, models. Interestingly, we find that while the presence of tightly connected clusters inhibit SIR processes, it speeds up SIS diseases. In this case, we observe that heterogeneous temporal connectivity patterns and modular st…
The mathematical model of the spread of the epidemic is developed, which considers fluctuations in the number of human social contacts. The model is based on the logistic equation. The oscillation in the number of social contacts within one week is considered as the main source of fluctuations. The time-fluctuating variable of the number of contacts is represented as the sum of the first two terms of the Fourier series expansion of number of contacts. It is shown that the largest fluctuation amplitudes occur near the maximum rate of the epidemic spread. After that, the effect of fluctuations d…
This article reviews and presents various solved and open problems in the development, analysis, and control of epidemic models. We are interested in presenting a relatively concise report for new engineers looking to enter the field of spreading processes on complex networks.
The study of epidemic spreading on populations of networked individuals has seen recently a great deal of significant progresses. A common point of all past studies is, however, that there is only one peak of infected density in each single epidemic spreading episode. At variance, real data from different cities over the world suggest that, besides a major single peak trait of infected density, a finite probability exists for a pattern made of two (or multiple) peaks. We show that such a latter feature is fully distinctive of a multilayered network of interactions, and reveal that actually a t…
The spreading of an infectious disease can trigger human behavior responses to the disease, which in turn plays a crucial role on the spreading of epidemic. In this study, to illustrate the impacts of the human behavioral responses, a new class of individuals, $S^F$, is introduced to the classical susceptible-infected-recovered ($SIR$) model. In the model, $S^F$ state represents that susceptible individuals who take self-initiate protective measures to lower the probability of being infected, and a susceptible individual may go to $S^F$ state with a response rate when contacting an infectious …
In this work, we aim to understand the influence of the heterogeneity of infection rates on the Susceptible-Infected-Susceptible (SIS) epidemic spreading. Employing the classic SIS model as the benchmark, we study the influence of the independently identically distributed infection rates on the average fraction of infected nodes in the metastable state. The log-normal, gamma and a newly designed distributions are considered for infection rates. We find that, when the recovery rate is small, i.e.\ the epidemic spreads out in both homogeneous and heterogeneous cases: 1) the heterogeneity of infe…
Many real networks are embedded in a metric space: the interactions among individuals depend on their spatial distances and usually take place among their nearest neighbors. In this paper, we introduce a modified susceptible-infected-susceptible (SIS) model to study geographical effects on the spread of diseases by assuming that the probability of a healthy individual infected by an infectious one is inversely proportional to the Euclidean distance between them. It is found that geography plays a more important role than hubs in disease spreading: the more geographically constrained the networ…
Random walk is one of the basic mechanisms found in many network applications. We study the epidemic spreading dynamics driven by biased random walks on complex networks. In our epidemic model, each time infected nodes constantly spread some infected packets by biased random walks to their neighbor nodes causing the infection of the susceptible nodes that receive the packets. An infected node get recovered from infection with a fixed probability. Simulation and analytical results on model and real-world networks show that the epidemic spreading becomes intense and wide with the increase of del…
Recent studies on network geometry, a way of describing network structures as geometrical objects, are revolutionizing our way to understand dynamical processes on networked systems. Here, we cope with the problem of epidemic spreading, using the Susceptible-Infected-Susceptible (SIS) model, in simplicial complexes. In particular, we analyze the dynamics of SIS in complex networks characterized by pairwise interactions (links), and three-body interactions (filled triangles, also known as 2-simplices). This higher-order description of the epidemic spreading is analytically formulated using a mi…
The interplay between traffic dynamics and epidemic spreading on complex networks has received increasing attention in recent years. However, the control of traffic-driven epidemic spreading remains to be a challenging problem. In this Brief Report, we propose a method to suppress traffic-driven epidemic outbreak by properly removing some edges in a network. We find that the epidemic threshold can be enhanced by the targeted cutting of links among large-degree nodes or edges with the largest algorithmic betweeness. In contrast, the epidemic threshold will be reduced by the random edge removal.…
The interplay of biological, social, structural and random factors makes disease forecasting extraordinarily complex. The course of an epidemic exhibits average growth dynamics determined by features of the pathogen and the population, yet also features significant variability reflecting the stochastic nature of disease spread. In this work, we reframe a stochastic branching process analysis in terms of probability generating functions and compare it to continuous time epidemic simulations on networks. In doing so, we predict the diversity of emerging epidemic courses on both homogeneous and h…
We propose a targeted intervention protocol where recovery is restricted to individuals that have the least number of infected neighbours. Our recovery strategy is highly efficient on any kind of network, since epidemic outbreaks are minimal when compared to the baseline scenario of spontaneous recovery. In the case of spatially embedded networks, we find that an epidemic stays strongly spatially confined with a characteristic length scale undergoing a random walk. We demonstrate numerically and analytically that this dynamics leads to an epidemic spot with a flat surface structure and a radiu…
We study Susceptible-Exposed-Asymptomatic-Infectious-Recovered (SEAIR) epidemic spreading model of COVID-19. It captures two important characteristics of the infectiousness of COVID-19: delayed start and its appearance before onset of symptoms, or even with total absence of them. The model is theoretically analyzed in continuous-time compartmental version and discrete-time version on random regular graphs and complex networks. We show analytically that there are relationships between the epidemic thresholds and the equations for the susceptible populations at the endemic equilibrium in all thr…
Drug resistance and strong contacts actually play crucial roles in epidemic spread in complex systems. Nevertheless, neither theoretical model or methodology is proposed to address this. We thus consider an edge-based epidemic spread model considering the two key ingredients, in which the contacts are grouped into two classes: strong contacts and normal ones. Next, we present a unified edge-based compartmental approach to the spread dynamics on Erdös-Rényi (ER) networks and validate its results by extensive numerical simulations. In case that epidemic is totally drug-resistant, we both numeric…
In this paper, we study the interplay between individual behaviors and epidemic spreading in a dynamical network. We distribute agents on a square-shaped region with periodic boundary conditions. Every agent is regarded as a node of the network and a wireless link is established between two agents if their geographical distance is less than a certain radius. At each time, every agent assesses the epidemic situation and make decisions on whether it should stay in or leave its current place. An agent will leave its current place with a speed if the number of infected neighbors reaches or exceeds…
A model for epidemic spreading on rewiring networks is introduced and analyzed for the case of scale free steady state networks. It is found that contrary to what one would have naively expected, the rewiring process typically tends to suppress epidemic spreading. In particular it is found that as in static networks, rewiring networks with degree distribution exponent $γ>3$ exhibit a threshold in the infection rate below which epidemics die out in the steady state. However the threshold is higher in the rewiring case. For $2<γ\leq 3$ no such threshold exists, but for small infection rate the s…
When an epidemic spreads in a population, individuals may adaptively change the structure of their social contact network to reduce risk of infection. Here we study the spread of an epidemic on an adaptive network with community structure. We model the effect of two communities with different average degrees. The disease model is susceptible-infected-susceptible (SIS), and adaptation is rewiring of links between susceptibles and infectives. The bifurcation structure is obtained, and a mean field model is developed that accurately predicts the steady state behavior of the system. We show that a…
Changs in individual behavior often entangles with the dynamic interaction of individuals, which complicates the epidemic process and brings great challenges for the understanding and control of the epidemic. In this work, we consider three kinds of typical behavioral changes in epidemic process that is, self-quarantine of infected individuals, self-protection of susceptible individuals, and social distancing between them. We connect the behavioral changes with individual's social attributes by the activity-driven network with attractiveness. A mean-field theory is established to derive an ana…
Just like the degrees of human and animal interaction networks, the distribution of the times between interactions is known to often be right-skewed and fat-tailed. Both these distributions affect epidemic dynamics strongly, but, as we show in this Letter, for very different reasons. Whereas the high degrees of the tail are critical for facilitating epidemics, it is the small interevent times that control the dynamics of epidemics. We investigate this effect both analytically and numerically for different versions of the Susceptible-Infected-Recovered model on different types of networks.
This paper investigates epidemic control behavioral synchronization for a class of complex networks resulting from spread of epidemic diseases via pinning feedback control strategy. Based on the quenched mean field theory, epidemic control synchronization models with inhibition of contact behavior is constructed, combining with the epidemic transmission system and the complex dynamical network carrying extra controllers. By the properties of convex functions and Gerschgorin theorem, the epidemic threshold of the model is obtained, and the global stability of disease-free equilibrium is analyze…
Understanding and predicting outbreaks of contagious diseases are crucial to the development of society and public health, especially for underdeveloped countries. However, challenging problems are encountered because of complex epidemic spreading dynamics influenced by spatial structure and human dynamics (including both human mobility and human interaction intensity). We propose a systematical model to depict nationwide epidemic spreading in Côte d'Ivoire, which integrates multiple factors, such as human mobility, human interaction intensity, and demographic features. We provide insights to …
We propose a model for epidemic spreading on a finite complex network with a restriction to at most one contamination per time step. Because of a highly discrete character of the process, the analysis cannot use the continous approximation, widely exploited for most of the models. Using discrete approach we investigate the epidemic threshold and the quasi-stationary distribution. The main result is a theorem about mixing time for the process, which scales like logarithm of the network size and which is proportional to the inverse of the distance from the epidemic threshold. In order to present…
Epidemic spreading on physical contact network will naturally introduce the human awareness information diffusion on virtual contact network, and the awareness diffusion will in turn depress the epidemic spreading, thus forming the competing spreading processes of epidemic and awareness in a multiplex networks. In this paper, we study the competing dynamics of epidemic and awareness, both of which follow the SIR process, in a two-layer networks based on microscopic Markov chain approach and numerical simulations. We find that strong capacities of awareness diffusion and self-protection of indi…
In this paper, we study the interplay between the epidemic spreading and the diffusion of awareness in multiplex networks. In the model, an infectious disease can spread in one network representing the paths of epidemic spreading (contact network), leading to the diffusion of awareness in the other network (information network), and then the diffusion of awareness will cause individuals to take social distances, which in turn affects the epidemic spreading. As for the diffusion of awareness, we assume that, on the one hand, individuals can be informed by other aware neighbors in information ne…
For preventing the spread of epidemics such as the coronavirus disease COVID-19, social distancing and the isolation of infected persons are crucial. However, existing reaction-diffusion equations for epidemic spreading are incapable of describing these effects. We present an extended model for disease spread based on combining an SIR model with a dynamical density functional theory where social distancing and isolation of infected persons are explicitly taken into account. The model shows interesting nonequilibrium phase separation associated with a reduction of the number of infections, and …
Incorporating dynamic contact networks and delayed awareness into a contagion model with memory, we study the spreading patterns of infectious diseases in connected populations. It is found that the spread of an infectious disease is not only related to the past exposures of an individual to the infected but also to the time scales of risk perception reflected in the social network adaptation. The epidemic threshold $p_{c}$ is found to decrease with the rise of the time scale parameter s and the memory length T, they satisfy the equation $p_{c} =\frac{1}{T}+ \frac{ωT}{<k>a^s(1-e^{-ωT^2/a^s})}$…
The spread of disease on complex networks has attracted widely attention in the physics community. Recent works have demonstrated that heterogeneous degree and weight distributions have a significant influence on the epidemic dynamics. In this study, a novel edge-weight based compartmental approach is developed to estimate the epidemic threshold and epidemic size (final infected density) on networks with general degree and weight distributions, and a remarkable agreement with numerics is obtained. Even in complex network with the strong heterogeneous degree and weight distributions, this appro…
can evolve simultaneously. For the information-driven adaptive process, susceptible (infected) individuals who have abilities to recognize the disease would break the links of their infected (susceptible) neighbors to prevent the epidemic from further spreading. Simulation results and numerical analyses based on the pairwise approach indicate that the information-driven adaptive process can not only slow down the speed of epidemic spreading, but can also diminish the epidemic prevalence at the final state significantly. In addition, the disease spreading and information diffusion pattern on th…
The structure of complex networks has long been understood to play a role in transmission and spreading phenomena on a graph. This behavior is difficult to model analytically and is most often modeled numerically. Such networks form an important part of the structure of society, including transportation networks. As society fights to control the COVID-19 pandemic, an important question is to choose the optimum balance between the full opening of transport networks and the control of epidemic spread. In this paper we investigate how recent advances in analyzing network structure using informati…
We present a contact-based model to study the spreading of epidemics by means of extending the dynamic message passing approach to temporal networks. The shift in perspective from node- to edge-centric quantities enables accurate modelling of Markovian susceptible-infected-recovered outbreaks on time-varying trees, i.e., temporal networks with a loop-free underlying topology. On arbitrary graphs, the proposed contact-based model incorporates potential structural and temporal heterogeneities of the underlying contact network and improves analytic estimations with respect to the individual-based…
Many progresses in the understanding of epidemic spreading models have been obtained thanks to numerous modeling efforts and analytical and numerical studies, considering host populations with very different structures and properties, including complex and temporal interaction networks. Moreover, a number of recent studies have started to go beyond the assumption of an absence of coupling between the spread of a disease and the structure of the contacts on which it unfolds. Models including awareness of the spread have been proposed, to mimic possible precautionary measures taken by individual…
In the study of disease spreading on empirical complex networks in SIR model, initially infected nodes can be ranked according to some measure of their epidemic impact. The highest ranked nodes, also referred to as "superspreaders", are associated to dominant epidemic risks and therefore deserve special attention. In simulations on studied empirical complex networks, it is shown that the ranking depends on the dynamical regime of the disease spreading. A possible mechanism leading to this dependence is illustrated in an analytically tractable example. In systems where the allocation of resourc…
Epidemic spreading and cascading failure are two important dynamical processes over complex networks. They have been investigated separately for a long history. But in the real world, these two dynamics sometimes may interact with each other. In this paper, we explore a model combined with SIR epidemic spreading model and local loads sharing cascading failure model. There exists a critical value of tolerance parameter that whether the epidemic with high infection probability can spread out and infect a fraction of the network in this model. When the tolerance parameter is smaller than the crit…
The compartmental models used to study epidemic spreading often assume the same susceptibility for all individuals, and are therefore, agnostic about the effects that differences in susceptibility can have on epidemic spreading. Here we show that--for the SIS model--differential susceptibility can make networks more vulnerable to the spread of diseases when the correlation between a node's degree and susceptibility are positive, and less vulnerable when this correlation is negative. Moreover, we show that networks become more likely to contain a pocket of infection when individuals are more li…
The spread of disease through a physical-contact network and the spread of information about the disease on a communication network are two intimately related dynamical processes. We investigate the asymmetrical interplay between the two types of spreading dynamics, each occurring on its own layer, by focusing on the two fundamental quantities underlying any spreading process: epidemic threshold and the final infection ratio. We find that an epidemic outbreak on the contact layer can induce an outbreak on the communication layer, and information spreading can effectively raise the epidemic thr…
