Multiscale shape skeletonization on pixel adjacency graphs is an advanced intriguing research subject in the field of image processing, computer vision and data mining. The previous works in this area almost focused on the graph vertices. We proposed novel structured based graph morphological transformations based on edges opposite to the current node based transformations and used them for deploying skeletonization and reconstruction of infrared thermal images represented by graphs. The advantage of this method is that many widely used path based approaches become available within this definition of morphological operations. For instance, we use distance maps and image foresting transform (IFT) as two main path based methods are utilized for computing the skeleton of an image. Moreover, In addition, the open question proposed by Maragos et al (2013) about connectivity of graph skeletonization method are discussed and shown to be quite difficult to decide in general case.
University of Bonn（波恩大学）；Forschungszentrum Jülich GmbH（于利希研究中心有限公司）
Structural reconstruction of plant roots from MRI is challenging, because of low resolution and low signal-to-noise ratio of the 3D measurements which may lead to disconnectivities and wrongly connected roots. We propose a two-stage approach for this task. The first stage is based on semantic root vs. soil segmentation and finds lowest-cost paths from any root voxel to the shoot. The second stage takes the largest fully connected component generated in the first stage and uses 3D skeletonization to extract a graph structure. We evaluate our method on 22 MRI scans and compare to human expert re…
Spatial Graph Representation and Morphometric Analysis of the Pulmonary Vascular Tree From Computed Tomography Using Multi-Scale Hessian-Based Filter Fusion and TEASAR Skeletonization
Shaanxi University of Science and Technology（陕西科技大学）；Northwestern Polytechnical University（西北工业大学）；The University of Sydney（悉尼大学）；Shaanxi Normal University（陕西师范大学）；Brunel University London（伦敦布鲁内尔大学）；Tongji University（同济大学）
Morphological reconstruction (MR) is often employed by seeded image segmentation algorithms such as watershed transform and power watershed as it is able to filter seeds (regional minima) to reduce over-segmentation. However, MR might mistakenly filter meaningful seeds that are required for generating accurate segmentation and it is also sensitive to the scale because a single-scale structuring element is employed. In this paper, a novel adaptive morphological reconstruction (AMR) operation is proposed that has three advantages. Firstly, AMR can adaptively filter useless seeds while preserving…
A line of a bilingual document page may contain text words in regional language and numerals in English. For Optical Character Recognition (OCR) of such a document page, it is necessary to identify different script forms before running an individual OCR system. In this paper, we have identified a tool of morphological opening by reconstruction of an image in different directions and regional descriptors for script identification at word level, based on the observation that every text has a distinct visual appearance. The proposed system is developed for three Indian major bilingual documents, …
Instead of directly utilizing an observed image including some outliers, noise or intensity inhomogeneity, the use of its ideal value (e.g. noise-free image) has a favorable impact on clustering. Hence, the accurate estimation of the residual (e.g. unknown noise) between the observed image and its ideal value is an important task. To do so, we propose an $\ell_0$ regularization-based Fuzzy $C$-Means (FCM) algorithm incorporating a morphological reconstruction operation and a tight wavelet frame transform. To achieve a sound trade-off between detail preservation and noise suppression, morpholog…
Although spatial information of images usually enhance the robustness of the Fuzzy C-Means (FCM) algorithm, it greatly increases the computational costs for image segmentation. To achieve a sound trade-off between the segmentation performance and the speed of clustering, we come up with a Kullback-Leibler (KL) divergence-based FCM algorithm by incorporating a tight wavelet frame transform and a morphological reconstruction operation. To enhance FCM's robustness, an observed image is first filtered by using the morphological reconstruction. A tight wavelet frame system is employed to decompose …
This paper deals with enhancement of images with poor contrast and detection of background. Proposes a frame work which is used to detect the background in images characterized by poor contrast. Image enhancement has been carried out by the two methods based on the Weber's law notion. The first method employs information from image background analysis by blocks, while the second transformation method utilizes the opening operation, closing operation, which is employed to define the multi-background gray scale images. The complete image processing is done using MATLAB simulation model. Finally,…
MDiff-FMT: Morphology-aware Diffusion Model for Fluorescence Molecular Tomography with Small-scale Datasets
School of Computer and Information Technology, Shanxi University（山西大学计算机与信息技术学院）；School of Biological and Medical Engineering, Beihang University（北京航空航天大学生物与医学工程学院）
School of Information and Electronics, Beijing Institute of Technology（北京理工大学信息与电子学院）
Multi-temporal hyperspectral images can be used to detect changed information, which has gradually attracted researchers' attention. However, traditional change detection algorithms have not deeply explored the relevance of spatial and spectral changed features, which leads to low detection accuracy. To better excavate both spectral and spatial information of changed features, a joint morphology and patch-tensor change detection (JMPT) method is proposed. Initially, a patch-based tensor strategy is adopted to exploit similar property of spatial structure, where the non-overlapping local patch …
Evaluating the point cloud of individual trees generated from images based on Neural Radiance fields (NeRF) method
Fuzhou University（福州大学）；National Engineering Research Center of Geospatial Information Technology（国家地理空间信息技术工程研究中心）；Key Lab of Spatial Data Mining and Information Sharing of Ministry of Education（空间数据挖掘与信息共享教育部重点实验室）；The Academy of Digital China (Fujian)（数字中国研究院（福建））
DINeuro: Distilling Knowledge from 2D Natural Images via Deformable Tubular Transferring Strategy for 3D Neuron Reconstruction
School of Computer Science, The University of Sydney（悉尼大学计算机学院）；SEU-ALLEN Joint Center, Institute for Brain and Intelligence, Southeast University（东南大学SEU-ALLEN联合中心）；Harvard Medical School（哈佛医学院）；Brigham and Women’s Hospital（布莱根妇女医院）
The University of Leeds（利兹大学）；The University of Manchester（曼彻斯特大学）；Mashhad University of Medical Sciences（马什哈德医科大学）
In this study, a novel method of data augmentation has been presented for the segmentation of placental histological images when the labeled data are scarce. This method generates new realizations of the placenta intervillous morphology while maintaining the general textures and orientations. As a result, a diversified artificial dataset of images is generated that can be used for training deep learning segmentation models. We have observed that on average the presented method of data augmentation led to a 42% decrease in the binary cross-entropy loss of the validation dataset compared to the …
University of Paris-Saclay（巴黎萨克雷大学）；CEA（法国原子能和替代能源委员会）；CNRS（法国国家科学研究中心）；WITSEE
Recent studies have demonstrated the superiority of deep learning in medical image analysis, especially in cell instance segmentation, a fundamental step for many biological studies. However, the excellent performance of the neural networks requires training on large, unbiased dataset and annotations, which is labor-intensive and expertise-demanding. This paper presents an end-to-end framework to automatically detect and segment NeuN stained neuronal cells on histological images using only point annotations. Unlike traditional nuclei segmentation with point annotation, we propose using point a…
With the injection of contrast material into blood vessels, multi-phase contrasted CT images can enhance the visibility of vessel networks in the human body. Reconstructing the 3D geometric morphology of liver vessels from the contrasted CT images can enable multiple liver preoperative surgical planning applications. Automatic reconstruction of liver vessel morphology remains a challenging problem due to the morphological complexity of liver vessels and the inconsistent vessel intensities among different multi-phase contrasted CT images. On the other side, high integrity is required for the 3D…
Cixi Institute of Biomedical Engineering, Ningbo Institute of Materials Technology and Engineering, Chinese Academy of Sciences（中国科学院宁波材料技术与工程研究所慈溪生物医学工程研究所）；University of Chinese Academy of Sciences（中国科学院大学）；Baidu Inc（百度公司）；Southern University of Science and Technology（南方科技大学）；Zhongshan Ophthalmic Center, Sun Yat-sen University（中山大学中山眼科中心）；Inception Institute of Artificial Intelligence（起源人工智能研究院）
Precise characterization and analysis of iris shape from Anterior Segment OCT (AS-OCT) are of great importance in facilitating diagnosis of angle-closure-related diseases. Existing methods focus solely on analyzing structural properties identified from the 2D slice, while accurate characterization of morphological changes of iris shape in 3D AS-OCT may be able to reveal in addition the risk of disease progression. In this paper, we propose a novel framework for reconstruction and quantification of 3D iris surface from AS-OCT imagery. We consider it to be the first work to detect angle-closure …
German Cancer Research Center (DKFZ)（德国癌症研究中心（DKFZ））；Heidelberg University（海德堡大学）；Heidelberg University Hospital（海德堡大学医院）
Purpose: Photoacoustic tomography (PAT) is a novel imaging technique that can spatially resolve both morphological and functional tissue properties, such as the vessel topology and tissue oxygenation. While this capacity makes PAT a promising modality for the diagnosis, treatment and follow-up of various diseases, a current drawback is the limited field-of-view (FoV) provided by the conventionally applied 2D probes. Methods: In this paper, we present a novel approach to 3D reconstruction of PAT data (Tattoo tomography) that does not require an external tracking system and can smoothly be integ…
Reconstruction of 3D lumbar spine models from incomplete segmentations using landmark detection
University of Koblenz（科布伦茨大学）；Institute for Computational Visualistics（计算视觉研究所）；Institute for Medical Technology and Information Processing（医学技术与信息处理研究所）
ReconMIL: Synergizing Latent Space Reconstruction with Bi-Stream Mamba for Whole Slide Image Analysis
USTC（中国科学技术大学）；NUDT（南京理工大学）；SCNU（华南师范大学）；NTU（南洋理工大学）；Anhui Province Key Laboratory of Biomedical Imaging and Intelligent Processing（安徽省生物医学成像与智能处理重点实验室）
Institute of AI for Health, Helmholtz Munich -- German Research Centre for Environmental Health（亥姆霍兹慕尼黑中心——德国环境健康研究中心健康人工智能研究所）；Technical University of Munich（慕尼黑工业大学）；Tel Aviv University（特拉维夫大学）；AstraZeneca（阿斯利康）
Diffusion models are a special type of generative model, capable of synthesising new data from a learnt distribution. We introduce DISPR, a diffusion-based model for solving the inverse problem of three-dimensional (3D) cell shape prediction from two-dimensional (2D) single cell microscopy images. Using the 2D microscopy image as a prior, DISPR is conditioned to predict realistic 3D shape reconstructions. To showcase the applicability of DISPR as a data augmentation tool in a feature-based single cell classification task, we extract morphological features from the red blood cells grouped into …
Existing methods to reconstruct vascular structures from a computed tomography (CT) angiogram rely on injection of intravenous contrast to enhance the radio-density within the vessel lumen. However, pathological changes can be present in the blood lumen, vessel wall or a combination of both that prevent accurate reconstruction. In the example of aortic aneurysmal disease, a blood clot or thrombus adherent to the aortic wall within the expanding aneurysmal sac is present in 70-80% of cases. These deformations prevent the automatic extraction of vital clinically relevant information by current m…
