A new estimator, named S-LASSO, is proposed for the coefficient function of the Function-on-Function linear regression model. The S-LASSO estimator is shown to be able to increase the interpretability of the model, by better locating regions where the coefficient function is zero, and to smoothly estimate non-zero values of the coefficient function. The sparsity of the estimator is ensured by a \textit{functional LASSO penalty}, which pointwise shrinks toward zero the coefficient function, while the smoothness is provided by two roughness penalties that penalize the curvature of the final estimator. The resulting estimator is proved to be estimation and pointwise sign consistent. Via an extensive Monte Carlo simulation study, the estimation and predictive performance of the S-LASSO estimator are shown to be better than (or at worst comparable with) competing estimators already presented in the literature before. Practical advantages of the S-LASSO estimator are illustrated through the analysis of the \textit{Canadian weather}, \textit{Swedish mortality} and \textit{ship CO\textsubscript{2} emission data}. The S-LASSO method is implemented in the \textsf{R} package \textsf{slasso}, openly available online on CRAN.
The least absolute shrinkage and selection operator (LASSO) of Tibshirani (1996) is a prominent estimator which selects significant (under some sense) features and kills insignificant ones. Indeed the LASSO shrinks features lager than a noise level to zero. In this paper, we force LASSO to be shrunken more by proposing a Stein-type shrinkage estimator emanating from the LASSO, namely the Stein-type LASSO. The newly proposed estimator proposes good performance in risk sense numerically. Variants of this estimator have smaller relative MSE and prediction error, compared to the LASSO, in the anal…
The $\infty$-S test via regression quantile affine LASSO
University of Geneva（日内瓦大学）；Charles University Prague（布拉格查理大学）；National University of Defense and Technology（国防科技大学）；École Normale Supérieure Paris-Saclay（巴黎萨克雷高等师范学院）
The fused lasso, also known as total-variation denoising, is a locally-adaptive function estimator over a regular grid of design points. In this paper, we extend the fused lasso to settings in which the points do not occur on a regular grid, leading to an approach for non-parametric regression. This approach, which we call the $K$-nearest neighbors ($K$-NN) fused lasso, involves (i) computing the $K$-NN graph of the design points; and (ii) performing the fused lasso over this $K$-NN graph. We show that this procedure has a number of theoretical advantages over competing approaches: specificall…
Much of the theory for the lasso in the linear model $Y = X β^* + \varepsilon$ hinges on the quantity $2 \| X^\top \varepsilon \|_{\infty} / n$, which we call the lasso's effective noise. Among other things, the effective noise plays an important role in finite-sample bounds for the lasso, the calibration of the lasso's tuning parameter, and inference on the parameter vector $β^*$. In this paper, we develop a bootstrap-based estimator of the quantiles of the effective noise. The estimator is fully data-driven, that is, does not require any additional tuning parameters. We equip our estimator w…
Lasso is a popular and efficient approach to simultaneous estimation and variable selection in high-dimensional regression models. In this paper, a robust LAD-lasso method for multiple outcomes is presented that addresses the challenges of non-normal outcome distributions and outlying observations. Measured covariate data from space or time, or spectral bands or genomic positions often have natural correlation structure arising from measuring distance between the covariates. The proposed multi-outcome approach includes handling of such covariate blocks by a group fusion penalty, which encourag…
In this paper, we propose a majorization-minimization (MM) algorithm for high-dimensional fused lasso regression (FLR) suitable for parallelization using graphics processing units (GPUs). The MM algorithm is stable and flexible as it can solve the FLR problems with various types of design matrices and penalty structures within a few tens of iterations. We also show that the convergence of the proposed algorithm is guaranteed. We conduct numerical studies to compare our algorithm with other existing algorithms, demonstrating that the proposed MM algorithm is competitive in many settings includi…
This paper considers a high-dimensional linear regression problem where there are complex correlation structures among predictors. We propose a graph-constrained regularization procedure, named Sparse Laplacian Shrinkage with the Graphical Lasso Estimator (SLS-GLE). The procedure uses the estimated precision matrix to describe the specific information on the conditional dependence pattern among predictors, and encourages both sparsity on the regression model and the graphical model. We introduce the Laplacian quadratic penalty adopting the graph information, and give detailed discussions on th…
Regression with the lasso penalty is a popular tool for performing dimension reduction when the number of covariates is large. In many applications of the lasso, like in genomics, covariates are subject to measurement error. We study the impact of measurement error on linear regression with the lasso penalty, both analytically and in simulation experiments. A simple method of correction for measurement error in the lasso is then considered. In the large sample limit, the corrected lasso yields sign consistent covariate selection under conditions very similar to the lasso with perfect measureme…
Variance estimation in the linear model when $p > n$ is a difficult problem. Standard least squares estimation techniques do not apply. Several variance estimators have been proposed in the literature, all with accompanying asymptotic results proving consistency and asymptotic normality under a variety of assumptions. It is found, however, that most of these estimators suffer large biases in finite samples when true underlying signals become less sparse with larger per element signal strength. One estimator seems to be largely neglected in the literature: a residual sum of squares based estima…
We establish statistical properties of random-weighting methods in LASSO regression under different regularization parameters $λ_n$ and suitable regularity conditions. The random-weighting methods in view concern repeated optimization of a randomized objective function, motivated by the need for computational approximations to Bayesian posterior sampling. In the context of LASSO regression, we repeatedly assign analyst-drawn random weights to terms in the objective function (including the penalty terms), and optimize to obtain a sample of random-weighting estimators. We show that existing appr…
The fused lasso is an important method for signal processing when the hidden signals are sparse and blocky. It is often used in combination with the squared loss function. However, the squared loss is not suitable for heavy tail error distributions nor is robust against outliers which arise often in practice. The least absolute deviations (LAD) loss provides a robust alternative to the squared loss. In this paper, we study the asymptotic properties of the fused lasso estimator with the LAD loss for signal approximation. We refer to this estimator as the LAD fused lasso signal approximator, or …
We study high-dimensional linear models and the $\ell_1$-penalized least squares estimator, also known as the Lasso estimator. In literature, oracle inequalities have been derived under restricted eigenvalue or compatibility conditions. In this paper, we complement this with entropy conditions which allow one to improve the dual norm bound, and demonstrate how this leads to new oracle inequalities. The new oracle inequalities show that a smaller choice for the tuning parameter and a trade-off between $\ell_1$-norms and small compatibility constants are possible. This implies, in particular for…
We derive an exact p-value for testing a global null hypothesis in a general adaptive regression problem. The general approach uses the Kac-Rice formula, as described in (Adler & Taylor 2007). The resulting formula is exact in finite samples, requiring only Gaussianity of the errors. We apply the formula to the lasso, group lasso, and principal components and matrix completion problems. In the case of the lasso, the new test relates closely to the recently proposed covariance test of Lockhart et al. (2013).
We introduce the spike-and-slab group lasso (SSGL) for Bayesian estimation and variable selection in linear regression with grouped variables. We further extend the SSGL to sparse generalized additive models (GAMs), thereby introducing the first nonparametric variant of the spike-and-slab lasso methodology. Our model simultaneously performs group selection and estimation, while our fully Bayes treatment of the mixture proportion allows for model complexity control and automatic self-adaptivity to different levels of sparsity. We develop theory to uniquely characterize the global posterior mode…
For some special data in reality, such as the genetic data, adjacent genes may have the similar function. Thus ensuring the smoothness between adjacent genes is highly necessary. But, in this case, the standard lasso penalty just doesn't seem appropriate anymore. On the other hand, in high-dimensional statistics, some datasets are easily contaminated by outliers or contain variables with heavy-tailed distributions, which makes many conventional methods inadequate. To address both issues, in this paper, we propose an adaptive Huber regression for robust estimation and inference, in which, the f…
Among the most popular variable selection procedures in high-dimensional regression, Lasso provides a solution path to rank the variables and determines a cut-off position on the path to select variables and estimate coefficients. In this paper, we consider variable selection from a new perspective motivated by the frequently occurred phenomenon that relevant variables are not completely distinguishable from noise variables on the solution path. We propose to characterize the positions of the first noise variable and the last relevant variable on the path. We then develop a new variable select…
Zero-inflated explanatory variables are common in fields such as ecology and finance. In this paper we address the problem of having excess of zero values in some explanatory variables which are subject to multioutcome lasso-regularized variable selection. Briefly, the problem results from the failure of the lasso-type of shrinkage methods to recognize any difference between zero value occurring either in the regression coefficient or in the corresponding value of the explanatory variable. This kind of confounding will obviously increase number of false positives - all non-zero regression coef…
We study a group lasso estimator for the multivariate linear regression model that accounts for correlated error terms. A block coordinate descent algorithm is used to compute this estimator. We perform a simulation study with categorical data and multivariate time series data, typical settings with a natural grouping among the predictor variables. Our simulation studies show the good performance of the proposed group lasso estimator compared to alternative estimators. We illustrate the method on a time series data set of gene expressions.
Although a few methods have been developed recently for building confidence intervals after model selection, how to construct confidence sets for joint post-selection inference is still an open question. In this paper, we develop a new method to construct confidence sets after lasso variable selection, with strong numerical support for its accuracy and effectiveness. A key component of our method is to sample from the conditional distribution of the response $y$ given the lasso active set, which, in general, is very challenging due to the tiny probability of the conditioning event. We overcome…
High dimensional Poisson regression has become a standard framework for the analysis of massive counts datasets. In this work we estimate the intensity function of the Poisson regression model by using a dictionary approach, which generalizes the classical basis approach, combined with a Lasso or a group-Lasso procedure. Selection depends on penalty weights that need to be calibrated. Standard methodologies developed in the Gaussian framework can not be directly applied to Poisson models due to heteroscedasticity. Here we provide data-driven weights for the Lasso and the group-Lasso derived fr…
When the design matrix has orthonormal columns, "soft thresholding" the ordinary least squares (OLS) solution produces the Lasso solution [Tibshirani, 1996]. If one uses the Puffer preconditioned Lasso [Jia and Rohe, 2012], then this result generalizes from orthonormal designs to full rank designs (Theorem 1). Theorem 2 refines the Puffer preconditioner to make the Lasso select the same model as removing the elements of the OLS solution with the largest p-values. Using a generalized Puffer preconditioner, Theorem 3 relates ridge regression to the preconditioned Lasso; this result is for the hi…
In the context of multiple regression model, suppose that the vector parameter of interest βis subjected to lie in the subspace hypothesis Hβ= h, where this restriction is based on either additional information or prior knowledge. Then, the restricted estimator performs fairly well than the ordinary least squares one. In addition, when the number of variables is relatively large with respect to observations, the use of least absolute shrinkage and selection operator (LASSO) estimator is suggested for variable selection purposes. In this paper, we deffine a restricted LASSO estimator and config…
The least absolute shrinkage and selection operator (LASSO) is a popular technique for simultaneous estimation and model selection. There have been a lot of studies on the large sample asymptotic distributional properties of the LASSO estimator, but it is also well-known that the asymptotic results can give a wrong picture of the LASSO estimator's actual finite-sample behavior. The finite sample distribution of the LASSO estimator has been previously studied for the special case of orthogonal models. The aim in this work is to generalize the finite sample distribution properties of LASSO estim…
We study the distribution of the adaptive LASSO estimator (Zou (2006)) in finite samples as well as in the large-sample limit. The large-sample distributions are derived both for the case where the adaptive LASSO estimator is tuned to perform conservative model selection as well as for the case where the tuning results in consistent model selection. We show that the finite-sample as well as the large-sample distributions are typically highly non-normal, regardless of the choice of the tuning parameter. The uniform convergence rate is also obtained, and is shown to be slower than $n^{-1/2}$ in …
We derive expressions for the finite-sample distribution of the Lasso estimator in the context of a linear regression model in low as well as in high dimensions by exploiting the structure of the optimization problem defining the estimator. In low dimensions, we assume full rank of the regressor matrix and present expressions for the cumulative distribution function as well as the densities of the absolutely continuous parts of the estimator. Our results are presented for the case of normally distributed errors, but do not hinge on this assumption and can easily be generalized. Additionally, w…
Bayesian networks can represent directed gene regulations and therefore are favored over co-expression networks. However, hardly any Bayesian network study concerns the false discovery control (FDC) of network edges, leading to low accuracies due to systematic biases from inconsistent false discovery levels in the same study. We design four empirical tests to examine the FDC of Bayesian networks from three p-value based lasso regression variable selections --- two existing and one we originate. Our method, lassopv, computes p-values for the critical regularization strength at which a predictor…
We derive new theoretical results on the properties of the adaptive least absolute shrinkage and selection operator (adaptive lasso) for time series regression models. In particular, we investigate the question of how to conduct finite sample inference on the parameters given an adaptive lasso model for some fixed value of the shrinkage parameter. Central in this study is the test of the hypothesis that a given adaptive lasso parameter equals zero, which therefore tests for a false positive. To this end we construct a simple testing procedure and show, theoretically and empirically through ext…
The paper considers a linear regression model with multiple change-points occurring at unknown times. The LASSO technique is very interesting since it allows the parametric estimation, including the change-points, and automatic variable selection simultaneously. The asymptotic properties of the LASSO-type (which has as particular case the LASSO estimator) and of the adaptive LASSO estimators are studied. For this last estimator the oracle properties are proved. In both cases, a model selection criterion is proposed. Numerical examples are provided showing the performances of the adaptive LASSO…
The Lasso (Least Absolute Shrinkage and Selection Operator) has been a popular technique for simultaneous linear regression estimation and variable selection. In this paper, we propose a new novel approach for robust Lasso that follows the spirit of M-estimation. We define $M$-Lasso estimates of regression and scale as solutions to generalized zero subgradient equations. Another unique feature of this paper is that we consider complex-valued measurements and regression parameters, which requires careful mathematical characterization of the problem. An explicit and efficient algorithm for compu…
In this paper we present new theoretical results for the Dantzig and Lasso estimators of the drift in a high dimensional Ornstein-Uhlenbeck model under sparsity constraints. Our focus is on oracle inequalities for both estimators and error bounds with respect to several norms. In the context of the Lasso estimator our paper is strongly related to [11], who investigated the same problem under row sparsity. We improve their rates and also prove the restricted eigenvalue property solely under ergodicity assumption on the model. Finally, we demonstrate a numerical analysis to uncover the finite sa…
In a linear regression model of fixed dimension $p \leq n$, we construct confidence regions for the unknown parameter vector based on the Lasso estimator that uniformly and exactly hold the prescribed in finite samples as well as in an asymptotic setup. We thereby quantify estimation uncertainty as well as the "post-model selection error" of this estimator. More concretely, in finite samples with Gaussian errors and asymptotically in the case where the Lasso estimator is tuned to perform conservative model selection, we derive exact formulas for computing the minimal coverage probability over …
The precision matrix that encodes conditional linear dependency relations among a set of variables forms an important object of interest in multivariate analysis. Sparse estimation procedures for precision matrices such as the graphical lasso (Glasso) gained popularity as they facilitate interpretability, thereby separating pairs of variables that are conditionally dependent from those that are independent (given all other variables). Glasso lacks, however, robustness to outliers. To overcome this problem, one typically applies a robust plug-in procedure where the Glasso is computed from a rob…
Additive isotonic regression attempts to determine the relationship between a multi-dimensional observation variable and a response, under the constraint that the estimate is the additive sum of univariate component effects that are monotonically increasing. In this article, we present a new method for such regression called LASSO Isotone (LISO). LISO adapts ideas from sparse linear modelling to additive isotonic regression. Thus, it is viable in many situations with high dimensional predictor variables, where selection of significant versus insignificant variables are required. We suggest an …
For multiple index models, it has recently been shown that the sliced inverse regression (SIR) is consistent for estimating the sufficient dimension reduction (SDR) space if and only if $ρ=\lim\frac{p}{n}=0$, where $p$ is the dimension and $n$ is the sample size. Thus, when $p$ is of the same or a higher order of $n$, additional assumptions such as sparsity must be imposed in order to ensure consistency for SIR. By constructing artificial response variables made up from top eigenvectors of the estimated conditional covariance matrix, we introduce a simple Lasso regression method to obtain an e…
We define the group-lasso estimator for the natural parameters of the exponential families of distributions representing hierarchical log-linear models under multinomial sampling scheme. Such estimator arises as the solution of a convex penalized likelihood optimization problem based on the group-lasso penalty. We illustrate how it is possible to construct an estimator of the underlying log-linear model using the blocks of nonzero coefficients recovered by the group-lasso procedure. We investigate the asymptotic properties of the group-lasso estimator as a model selection method in a double-as…
In this article we study post-model selection estimators that apply ordinary least squares (OLS) to the model selected by first-step penalized estimators, typically Lasso. It is well known that Lasso can estimate the nonparametric regression function at nearly the oracle rate, and is thus hard to improve upon. We show that the OLS post-Lasso estimator performs at least as well as Lasso in terms of the rate of convergence, and has the advantage of a smaller bias. Remarkably, this performance occurs even if the Lasso-based model selection "fails" in the sense of missing some components of the "t…
We apply network Lasso to semi-supervised regression problems involving network structured data. This approach lends quite naturally to highly scalable learning algorithms in the form of message passing over an empirical graph which represents the network structure of the data. By using a simple non-parametric regression model, which is motivated by a clustering hypothesis, we provide an analysis of the estimation error incurred by network Lasso. This analysis reveals conditions on the the network structure and the available training data which guarantee network Lasso to be accurate. Remarkabl…
We study the asymptotic properties of Lasso+mLS and Lasso+Ridge under the sparse high-dimensional linear regression model: Lasso selecting predictors and then modified Least Squares (mLS) or Ridge estimating their coefficients. First, we propose a valid inference procedure for parameter estimation based on parametric residual bootstrap after Lasso+mLS and Lasso+Ridge. Second, we derive the asymptotic unbiasedness of Lasso+mLS and Lasso+Ridge. More specifically, we show that their biases decay at an exponential rate and they can achieve the oracle convergence rate of $s/n$ (where $s$ is the num…
The LASSO is a variable subset selection procedure in statistical linear regression based on $\ell_1$ penalization of the least-squares operator. Uniqueness of the LASSO is an important issue, especially for the study of the LASSO path. The goal of the present paper is to provide a generic sufficient condition on the design matrix for the LASSO minimizer to be unique. Unlike previous works on the question of uniqueness, our condition only depends on the design matrix. Our study is based on a general position condition on the design matrix which holds with probability one for most experimental …
In the analysis of survival outcome supplemented with both clinical information and high-dimensional gene expression data, use of the traditional Cox proportional hazards model (1972) fails to meet some emerging needs in biomedical research. First, the number of covariates is generally much larger the sample size. Secondly, predicting an outcome based on individual gene expression is inadequate because multiple biological processes and functional pathways regulate the expression associated with a gene. Another challenge is that the Cox model assumes that populations are homogenous, implying th…
We consider the linear regression problem, where the number $p$ of covariates is possibly larger than the number $n$ of observations $(x_{i},y_{i})_{i\leq i \leq n}$, under sparsity assumptions. On the one hand, several methods have been successfully proposed to perform this task, for example the LASSO or the Dantzig Selector. On the other hand, consider new values $(x_{i})_{n+1\leq i \leq m}$. If one wants to estimate the corresponding $y_{i}$'s, one should think of a specific estimator devoted to this task, referred by Vapnik as a "transductive" estimator. This estimator may differ from an e…
In this paper we study the properties of the Lasso estimator of the drift component in the diffusion setting. More specifically, we consider a multivariate parametric diffusion model $X$ observed continuously over the interval $[0,T]$ and investigate drift estimation under sparsity constraints. We allow the dimensions of the model and the parameter space to be large. We obtain an oracle inequality for the Lasso estimator and derive an error bound for the $L^2$-distance using concentration inequalities for linear functionals of diffusion processes. The probabilistic part is based upon elements …
The paper considers a linear model with grouped explanatory variables. If the model errors are not with zero mean and bounded variance or if model contains outliers, then the least squares framework is not appropriate. Thus, the quantile regression is an interesting alternative. In order to automatically select the relevant variable groups, we propose and study here the adaptive group LASSO quantile estimator. We establish the sparsity and asymptotic normality of the proposed estimator in two cases: fixed number and divergent number of variable groups. Numerical study by Monte Carlo simulation…
In this paper, we investigate a multivariate multi-response (MVMR) linear regression problem, which contains multiple linear regression models with differently distributed design matrices, and different regression and output vectors. The goal is to recover the support union of all regression vectors using $l_1/l_2$-regularized Lasso. We characterize sufficient and necessary conditions on sample complexity \emph{as a sharp threshold} to guarantee successful recovery of the support union. Namely, if the sample size is above the threshold, then $l_1/l_2$-regularized Lasso correctly recovers the s…
We investigate the problem of estimating the drift parameter of a high-dimensional Lévy-driven Ornstein--Uhlenbeck process under sparsity constraints. It is shown that both Lasso and Slope estimators achieve the minimax optimal rate of convergence (up to numerical constants), for tuning parameters chosen independently of the confidence level, which improves the previously obtained results for standard Ornstein--Uhlenbeck processes. The results are nonasymptotic and hold both in probability and conditional expectation with respect to an event resembling the restricted eigenvalue condition.
