Much of the theory for the lasso in the linear model $Y = X β^* + \varepsilon$ hinges on the quantity $2 \| X^\top \varepsilon \|_{\infty} / n$, which we call the lasso's effective noise. Among other things, the effective noise plays an important role in finite-sample bounds for the lasso, the calibration of the lasso's tuning parameter, and inference on the parameter vector $β^*$. In this paper, we develop a bootstrap-based estimator of the quantiles of the effective noise. The estimator is fully data-driven, that is, does not require any additional tuning parameters. We equip our estimator with finite-sample guarantees and apply it to tuning parameter calibration for the lasso and to high-dimensional inference on the parameter vector $β^*$.
We consider the problem of estimating sparse graphs by a lasso penalty applied to the inverse covariance matrix. Using a coordinate descent procedure for the lasso, we develop a simple algorithm that is remarkably fast: in the worst cases, it solves a 1000 node problem (~500,000 parameters) in about a minute, and is 50 to 2000 times faster than competing methods. It also provides a conceptual link between the exact problem and the approximation suggested by Meinhausen and Buhlmann (2006). We illustrate the method on some cell-signaling data from proteomics.
We consider the problem of estimating multiple related but distinct graphical models on the basis of a high-dimensional data set with observations that belong to distinct classes. A motivating example occurs in the analysis of gene expression data for tissue samples with and without cancer. In this case, we might wish to estimate a gene expression network for the normal tissue and a gene expression network for the tumor tissue. We expect the two gene expression networks to be similar but not identical to each other, and so more accurate estimation of these two networks may be possible using a …
The lasso has been studied extensively as a tool for estimating the coefficient vector in the high-dimensional linear model; however, considerably less is known about estimating the error variance in this context. In this paper, we propose the natural lasso estimator for the error variance, which maximizes a penalized likelihood objective. A key aspect of the natural lasso is that the likelihood is expressed in terms of the natural parameterization of the multiparameter exponential family of a Gaussian with unknown mean and variance. The result is a remarkably simple estimator of the error var…
Biological networks often change under different environmental and genetic conditions. Understanding how these networks change becomes an important problem in biological studies. In this paper, we model the network change as the difference of two precision matrices and propose a novel loss function for estimating the precision matrix difference. Under a new irrepresentability condition, we show that the new loss function with the lasso penalty can give consistent estimates in high-dimensional setting for sub-Gaussian and polynomial-tailed distributions. An efficient algorithm is developed base…
This article describes a full Bayesian treatment for simultaneous fixed-effect selection and parameter estimation in high-dimensional generalized linear mixed models. The approach consists of using a Bayesian adaptive Lasso penalty for signal-level adaptive shrinkage and a fast Variational Bayes scheme for estimating the posterior mode of the coefficients. The proposed approach offers several advantages over the existing methods, for example, the adaptive shrinkage parameters are automatically incorporated, no Laplace approximation step is required to integrate out the random effects. The perf…
Among the most popular variable selection procedures in high-dimensional regression, Lasso provides a solution path to rank the variables and determines a cut-off position on the path to select variables and estimate coefficients. In this paper, we consider variable selection from a new perspective motivated by the frequently occurred phenomenon that relevant variables are not completely distinguishable from noise variables on the solution path. We propose to characterize the positions of the first noise variable and the last relevant variable on the path. We then develop a new variable select…
Basis Pursuit (BP), Basis Pursuit DeNoising (BPDN), and LASSO are popular methods for identifying important predictors in the high-dimensional linear regression model, i.e. when the number of rows of the design matrix X is smaller than the number of columns. By definition, BP uniquely recovers the vector of regression coefficients b if there is no noise and the vector b has the smallest L1 norm among all vectors s such that Xb=Xs (identifiability condition). Furthermore, LASSO can recover the sign of b only under a much stronger irrepresentability condition. Meanwhile, it is known that the mod…
Longitudinal analysis is important in many disciplines, such as the study of behavioral transitions in social science. Only very recently, feature selection has drawn adequate attention in the context of longitudinal modeling. Standard techniques, such as generalized estimating equations, have been modified to select features by imposing sparsity-inducing regularizers. However, they do not explicitly model how a dependent variable relies on features measured at proximal time points. Recent graphical Granger modeling can select features in lagged time points but ignores the temporal correlation…
The least absolute shrinkage and selection operator (LASSO) of Tibshirani (1996) is a prominent estimator which selects significant (under some sense) features and kills insignificant ones. Indeed the LASSO shrinks features lager than a noise level to zero. In this paper, we force LASSO to be shrunken more by proposing a Stein-type shrinkage estimator emanating from the LASSO, namely the Stein-type LASSO. The newly proposed estimator proposes good performance in risk sense numerically. Variants of this estimator have smaller relative MSE and prediction error, compared to the LASSO, in the anal…
The high-dimensional linear model $y = X β^0 + ε$ is considered and the focus is put on the problem of recovering the support $S^0$ of the sparse vector $β^0.$ We introduce Lasso-Zero, a new $\ell_1$-based estimator whose novelty resides in an "overfit, then threshold" paradigm and the use of noise dictionaries concatenated to $X$ for overfitting the response. To select the threshold, we employ the quantile universal threshold based on a pivotal statistic that requires neither knowledge nor preliminary estimation of the noise level. Numerical simulations show that Lasso-Zero performs well in t…
We consider the problem of estimating a function $f\_{0}$ in logistic regression model. We propose to estimate this function $f\_{0}$ by a sparse approximation build as a linear combination of elements of a given dictionary of $p$ functions. This sparse approximation is selected by the Lasso or Group Lasso procedure. In this context, we state non asymptotic oracle inequalities for Lasso and Group Lasso under restricted eigenvalues assumption as introduced in \cite{BRT}.
Administrative data, or non-probability sample data, are increasingly being used to obtain official statistics due to their many benefits over survey methods. In particular, they are less costly, provide a larger sample size, and are not reliant on the response rate. However, it is difficult to obtain an unbiased estimate of the population mean from such data due to the absence of design weights. Several estimation approaches have been proposed recently using an auxiliary probability sample which provides representative covariate information of the target population. However, when this covaria…
We propose a new semi-parametric approach to the joint segmentation of multiple series corrupted by a functional part. This problem appears in particular in geodesy where GPS permanent station coordinate series are affected by undocumented artificial abrupt changes and additionally show prominent periodic variations. Detecting and estimating them are crucial, since those series are used to determine averaged reference coordinates in geosciences and to infer small tectonic motions induced by climate change. We propose an iterative procedure based on Dynamic Programming for the segmentation part…
There has been much recent work on inference after model selection when the noise level is known, however, $σ$ is rarely known in practice and its estimation is difficult in high-dimensional settings. In this work we propose using the square-root LASSO (also known as the scaled LASSO) to perform selective inference for the coefficients and the noise level simultaneously. The square-root LASSO has the property that choosing a reasonable tuning parameter is scale-free, namely it does not depend on the noise level in the data. We provide valid p-values and confidence intervals for the coefficient…
We propose Robust Lasso-Zero, an extension of the Lasso-Zero methodology, initially introduced for sparse linear models, to the sparse corruptions problem. We give theoretical guarantees on the sign recovery of the parameters for a slightly simplified version of the estimator, called Thresholded Justice Pursuit. The use of Robust Lasso-Zero is showcased for variable selection with missing values in the covariates. In addition to not requiring the specification of a model for the covariates, nor estimating their covariance matrix or the noise variance, the method has the great advantage of hand…
We consider the task of estimating a Gaussian graphical model in the high-dimensional setting. The graphical lasso, which involves maximizing the Gaussian log likelihood subject to an l1 penalty, is a well-studied approach for this task. We begin by introducing a surprising connection between the graphical lasso and hierarchical clustering: the graphical lasso in effect performs a two-step procedure, in which (1) single linkage hierarchical clustering is performed on the variables in order to identify connected components, and then (2) an l1-penalized log likelihood is maximized on the subset …
Directed acyclic graphs (DAGs) are commonly used to represent causal relationships among random variables in graphical models. Applications of these models arise in the study of physical, as well as biological systems, where directed edges between nodes represent the influence of components of the system on each other. The general problem of estimating DAGs from observed data is computationally NP-hard, Moreover two directed graphs may be observationally equivalent. When the nodes exhibit a natural ordering, the problem of estimating directed graphs reduces to the problem of estimating the str…
In high dimension, it is customary to consider Lasso-type estimators to enforce sparsity. For standard Lasso theory to hold, the regularization parameter should be proportional to the noise level, yet the latter is generally unknown in practice. A possible remedy is to consider estimators, such as the Concomitant/Scaled Lasso, which jointly optimize over the regression coefficients as well as over the noise level, making the choice of the regularization independent of the noise level. However, when data from different sources are pooled to increase sample size, or when dealing with multimodal …
The performance of the Lasso is well understood under the assumptions of the standard linear model with homoscedastic noise. However, in several applications, the standard model does not describe the important features of the data. This paper examines how the Lasso performs on a non-standard model that is motivated by medical imaging applications. In these applications, the variance of the noise scales linearly with the expectation of the observation. Like all heteroscedastic models, the noise terms in this Poisson-like model are \textit{not} independent of the design matrix. More specifically…
We consider the problem of estimating a low-dimensional parameter in high-dimensional linear regression. Constructing an approximately unbiased estimate of the parameter of interest is a crucial step towards performing statistical inference. Several authors suggest to orthogonalize both the variable of interest and the outcome with respect to the nuisance variables, and then regress the residual outcome with respect to the residual variable. This is possible if the covariance structure of the regressors is perfectly known, or is sufficiently structured that it can be estimated accurately from …
In this work, we explore the problems of detecting the number of narrow-band, far-field targets and estimating their corresponding directions from single snapshot measurements. The principles of sparse signal recovery (SSR) are used for the single snapshot detection and estimation of multiple targets. In the SSR framework, the DoA estimation problem is grid based and can be posed as the lasso optimization problem. However, the SSR framework for DoA estimation gives rise to the grid mismatch problem, when the unknown targets (sources) are not matched with the estimation grid chosen for the cons…
This paper introduces the Sylvester graphical lasso (SyGlasso) that captures multiway dependencies present in tensor-valued data. The model is based on the Sylvester equation that defines a generative model. The proposed model complements the tensor graphical lasso (Greenewald et al., 2019) that imposes a Kronecker sum model for the inverse covariance matrix by providing an alternative Kronecker sum model that is generative and interpretable. A nodewise regression approach is adopted for estimating the conditional independence relationships among variables. The statistical convergence of the m…
We propose a self-tuning $\sqrt{\mathrm {Lasso}}$ method that simultaneously resolves three important practical problems in high-dimensional regression analysis, namely it handles the unknown scale, heteroscedasticity and (drastic) non-Gaussianity of the noise. In addition, our analysis allows for badly behaved designs, for example, perfectly collinear regressors, and generates sharp bounds even in extreme cases, such as the infinite variance case and the noiseless case, in contrast to Lasso. We establish various nonasymptotic bounds for $\sqrt{\mathrm {Lasso}}$ including prediction norm rate …
Sparse linear inverse problems appear in a variety of settings, but often the noise contaminating observations cannot accurately be described as bounded by or arising from a Gaussian distribution. Poisson observations in particular are a feature of several real-world applications. Previous work on sparse Poisson inverse problems encountered several limiting technical hurdles. This paper describes a novel alternative analysis approach for sparse Poisson inverse problems that (a) sidesteps the technical challenges in previous work, (b) admits estimators that can readily be computed using off-the…
We investigate the problem of estimating the drift parameter of a high-dimensional Lévy-driven Ornstein--Uhlenbeck process under sparsity constraints. It is shown that both Lasso and Slope estimators achieve the minimax optimal rate of convergence (up to numerical constants), for tuning parameters chosen independently of the confidence level, which improves the previously obtained results for standard Ornstein--Uhlenbeck processes. The results are nonasymptotic and hold both in probability and conditional expectation with respect to an event resembling the restricted eigenvalue condition.
We propose a pivotal method for estimating high-dimensional sparse linear regression models, where the overall number of regressors $p$ is large, possibly much larger than $n$, but only $s$ regressors are significant. The method is a modification of the lasso, called the square-root lasso. The method is pivotal in that it neither relies on the knowledge of the standard deviation $σ$ or nor does it need to pre-estimate $σ$. Moreover, the method does not rely on normality or sub-Gaussianity of noise. It achieves near-oracle performance, attaining the convergence rate $σ\{(s/n)\log p\}^{1/2}$ in …
We compare alternative computing strategies for solving the constrained lasso problem. As its name suggests, the constrained lasso extends the widely-used lasso to handle linear constraints, which allow the user to incorporate prior information into the model. In addition to quadratic programming, we employ the alternating direction method of multipliers (ADMM) and also derive an efficient solution path algorithm. Through both simulations and real data examples, we compare the different algorithms and provide practical recommendations in terms of efficiency and accuracy for various sizes of da…
For multiple index models, it has recently been shown that the sliced inverse regression (SIR) is consistent for estimating the sufficient dimension reduction (SDR) space if and only if $ρ=\lim\frac{p}{n}=0$, where $p$ is the dimension and $n$ is the sample size. Thus, when $p$ is of the same or a higher order of $n$, additional assumptions such as sparsity must be imposed in order to ensure consistency for SIR. By constructing artificial response variables made up from top eigenvectors of the estimated conditional covariance matrix, we introduce a simple Lasso regression method to obtain an e…
Ridership estimation at station level plays a critical role in metro transportation planning. Among various existing ridership estimation methods, direct demand model has been recognized as an effective approach. However, existing direct demand models including Geographically Weighted Regression (GWR) have rarely included local model selection in ridership estimation. In practice, acquiring insights into metro ridership under multiple influencing factors from a local perspective is important for passenger volume management and transportation planning operations adapting to local conditions. In…
We study the property of the Fused Lasso Signal Approximator (FLSA) for estimating a blocky signal sequence with additive noise. We transform the FLSA to an ordinary Lasso problem. By studying the property of the design matrix in the transformed Lasso problem, we find that the irrepresentable condition might not hold, in which case we show that the FLSA might not be able to recover the signal pattern. We then apply the newly developed preconditioning method -- Puffer Transformation [Jia and Rohe, 2012] on the transformed Lasso problem. We call the new method the preconditioned fused Lasso and …
Université Paris Saclay（巴黎萨克雷大学）；Inria（法国国家信息与自动化研究所）；CEA（法国原子能和替代能源委员会）；Univ. Montpellier（蒙彼利埃大学）；CNRS（法国国家科学研究中心）
Sparsity promoting norms are frequently used in high dimensional regression. A limitation of such Lasso-type estimators is that the optimal regularization parameter depends on the unknown noise level. Estimators such as the concomitant Lasso address this dependence by jointly estimating the noise level and the regression coefficients. Additionally, in many applications, the data is obtained by averaging multiple measurements: this reduces the noise variance, but it dramatically reduces sample sizes and prevents refined noise modeling. In this work, we propose a concomitant estimator that can c…
The sparse group lasso optimization problem is solved using a coordinate gradient descent algorithm. The algorithm is applicable to a broad class of convex loss functions. Convergence of the algorithm is established, and the algorithm is used to investigate the performance of the multinomial sparse group lasso classifier. On three different real data examples the multinomial group lasso clearly outperforms multinomial lasso in terms of achieved classification error rate and in terms of including fewer features for the classification. The run-time of our sparse group lasso implementation is of …
We study the asymptotic properties of Lasso+mLS and Lasso+Ridge under the sparse high-dimensional linear regression model: Lasso selecting predictors and then modified Least Squares (mLS) or Ridge estimating their coefficients. First, we propose a valid inference procedure for parameter estimation based on parametric residual bootstrap after Lasso+mLS and Lasso+Ridge. Second, we derive the asymptotic unbiasedness of Lasso+mLS and Lasso+Ridge. More specifically, we show that their biases decay at an exponential rate and they can achieve the oracle convergence rate of $s/n$ (where $s$ is the num…
We derive the $l_{\infty}$ convergence rate simultaneously for Lasso and Dantzig estimators in a high-dimensional linear regression model under a mutual coherence assumption on the Gram matrix of the design and two different assumptions on the noise: Gaussian noise and general noise with finite variance. Then we prove that simultaneously the thresholded Lasso and Dantzig estimators with a proper choice of the threshold enjoy a sign concentration property provided that the non-zero components of the target vector are not too small.
In this paper, we aim to give a theoretical approximation for the penalty level of $\ell_{1}$-regularization problems. This can save much time in practice compared with the traditional methods, such as cross-validation. To achieve this goal, we develop two Gaussian approximation methods, which are based on a moderate deviation theorem and Stein's method respectively. Both of them give efficient approximations and have good performances in simulations. We apply the two Gaussian approximation methods into three types of ultra-high dimensional $\ell_{1}$ penalized regressions: lasso, square-root …
We consider the problem of estimating a sparse multi-response regression function, with an application to expression quantitative trait locus (eQTL) mapping, where the goal is to discover genetic variations that influence gene-expression levels. In particular, we investigate a shrinkage technique capable of capturing a given hierarchical structure over the responses, such as a hierarchical clustering tree with leaf nodes for responses and internal nodes for clusters of related responses at multiple granularity, and we seek to leverage this structure to recover covariates relevant to each hiera…
Despite its prevalence in statistical datasets, heteroscedasticity (non-constant sample variances) has been largely ignored in the high-dimensional statistics literature. Recently, studies have shown that the Lasso can accommodate heteroscedastic errors, with minor algorithmic modifications (Belloni et al., 2012; Gautier and Tsybakov, 2013). In this work, we study heteroscedastic regression with linear mean model and log-linear variances model with sparse high-dimensional parameters. In this work, we propose estimating variances in a post-Lasso fashion, which is followed by weighted-least squa…
We consider estimating an unknown signal, both blocky and sparse, which is corrupted by additive noise. We study three interrelated least squares procedures and their asymptotic properties. The first procedure is the fused lasso, put forward by Friedman et al. [Ann. Appl. Statist. 1 (2007) 302--332], which we modify into a different estimator, called the fused adaptive lasso, with better properties. The other two estimators we discuss solve least squares problems on sieves; one constrains the maximal $\ell_1$ norm and the maximal total variation seminorm, and the other restricts the number of …
Toyota Technological Institute at Chicago（芝加哥丰田理工学院）；University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）
This paper considers the problem of estimating multiple related Gaussian graphical models from a $p$-dimensional dataset consisting of different classes. Our work is based upon the formulation of this problem as group graphical lasso. This paper proposes a novel hybrid covariance thresholding algorithm that can effectively identify zero entries in the precision matrices and split a large joint graphical lasso problem into small subproblems. Our hybrid covariance thresholding method is superior to existing uniform thresholding methods in that our method can split the precision matrix of each in…
We consider the Lasso for a noiseless experiment where one has observations $X β^0$ and uses the penalized version of basis pursuit. We compute for some special designs the compatibility constant, a quantity closely related to the restricted eigenvalue. We moreover show the dependence of the (penalized) prediction error on this compatibility constant. This exercise illustrates that compatibility is necessarily entering into the bounds for the (penalized) prediction error and that the bounds in the literature therefore are - up to constants - tight. We also give conditions that show that in the…
