The current outbreak of the coronavirus disease 2019 (COVID-19) is an unprecedented example of how fast an infectious disease can spread around the globe (especially in urban areas) and the enormous impact it causes on public health and socio-economic activities. Despite the recent surge of investigations about different aspects of the COVID-19 pandemic, we still know little about the effects of city size on the propagation of this disease in urban areas. Here we investigate how the number of cases and deaths by COVID-19 scale with the population of Brazilian cities. Our results indicate small towns are proportionally more affected by COVID-19 during the initial spread of the disease, such that the cumulative numbers of cases and deaths per capita initially decrease with population size. However, during the long-term course of the pandemic, this urban advantage vanishes and large cities start to exhibit higher incidence of cases and deaths, such that every 1% rise in population is associated with a 0.14% increase in the number of fatalities per capita after about four months since the first two daily deaths. We argue that these patterns may be related to the existence of proportionally more health infrastructure in the largest cities and a lower proportion of older adults in large urban areas. We also find the initial growth rate of cases and deaths to be higher in large cities; however, these growth rates tend to decrease in large cities and to increase in small ones over time.
We review and introduce a generalized reaction-diffusion approach to epidemic spreading in a metapopulation modeled as a complex network. The metapopulation consists of susceptible and infected individuals that are grouped in subpopulations symbolising cities and villages that are coupled by human travel in a transportation network. By analytic methods and numerical simulations we calculate the fraction of infected people in the metaopoluation in the long time limit, as well as the relevant parameters characterising the epidemic threshold that separates an epidemic from a non-epidemic phase. W…
Recent violent political extremist events in Brazil and epidemic modeling: The role of a SIS-like model on the understanding of spreading and control of radicalism
Topological aspects, like community structure, and temporal activity patterns, like burstiness, have been shown to severly influence the speed of spreading in temporal networks. We study the influence of the topology on the susceptible-infected (SI) spreading on time stamped communication networks, as obtained from a dataset of mobile phone records. We consider city level networks with intra- and inter-city connections. The networks using only intra-city links are usually sparse, where the spreading depends mainly on the average degree. The inter-city links serve as bridges in spreading, speed…
Only a fast and global transformation towards decarbonization and sustainability can keep the Earth in a civilization-friendly state. As hotspots for (green) innovation and experimentation, cities could play an important role in this transition. They are also known to profit from each other's ideas, with policy and technology innovations spreading to other cities. In this way, cities can be conceptualized as nodes in a globe-spanning learning network. The dynamics of this process are important for society's response to climate change and other challenges, but remain poorly understood on a macr…
The recent quantitative approaches for studing several aspects of urban life and infrastructure have shown that scale properties allow to understand many features of urban infrastructure and of human activity in cities. In this work, an analysis based on the complexity of cities network is performed for data on Brazilian cities firearms homicides. Due to the diversity in Brazilian population and cities, this is an interesting test for theories recently proposed. The superlinear power-law behavior for number of homicides as a function of city population, with exponent $β=1.15$ is obtained. The …
Brazil holds approximately 1/3 of population living infected with AIDS (acquired immunodeficiency syndrome) in Central and South Americas, and it was also the first developing country to implement a large-scale control and intervention program against AIDS epidemic. In this scenario, we investigate the temporal evolution and current status of the AIDS epidemic in Brazil. Specifically, we analyze records of annual absolute frequency of cases for more than 5000 cities for the first 33 years of the infection in Brazil. We found that (i) the annual absolute frequencies exhibit a logistic-type grow…
We propose an epidemiological model that includes the mobility patterns of the individuals, in the spirit to those considered in (Barmak, 2011, 2016) and (Medus, 2011). We assume that people move around in a city of 120x120 blocks with 300 inhabitants in each block. The mobility pattern is associated to a complex network in which nodes represent blocks while the links represent the traveling path of the individuals. We implemented three confinement strategies in order to mitigate the disease spreading: 1) global confinement, 2) partial restriction to mobility, and 3) localized confinement. In …
With the exponential growth in the world population and the constant increase in human mobility, the danger of outbreaks of epidemics is rising. Especially in high density urban areas such as public transport and transfer points, where people come in close proximity of each other, we observe a dramatic increase in the transmission of airborne viruses and related pathogens. It is essential to have a good understanding of the `transmission highways' in such areas, in order to prevent or to predict the spreading of infectious diseases. The approach we take is to combine as much information as is …
In this work, we adapt the epidemiological SIR model to study the evolution of the dissemination of COVID-19 in Germany and Brazil (nationally, in the State of Paraiba, and in the City of Campina Grande). We prove the well posedness and the continuous dependence of the model dynamics on its parameters. We also propose a simple probabilistic method for the evolution of the active cases that is instrumental for the automatic estimation of parameters of the epidemiological model. We obtained statistical estimates of the active cases based the probabilistic method and on the confirmed cases data. …
The current outbreak of novel coronavirus disease 2019 (COVID-19) poses an unprecedented global health and economic threat to interconnected human societies. Until a vaccine is developed, strategies for controlling the outbreak rely on aggressive social distancing. These measures largely disconnect the social network fabric of human societies, especially in urban areas. Here, we estimate the growth rates and reproductive numbers of COVID-19 in US cities from March 14th through March 19th to reveal a power-law scaling relationship to city population size. This means that COVID-19 is spreading f…
We study the dynamics of a spatially structured model of worldwide epidemics and formulate predictions for arrival times of the disease at any city in the network. The model is comprised of a system of ordinary differential equations describing a meta-population SIR compartmental model defined on a network where each node represents a city and edges represent flight paths connecting cities. Making use of the linear determinacy of the system, we consider spreading speeds and arrival times in the system linearized about the unstable disease free state and compare these to arrival times in the no…
Epidemic spread on networks is one of the most studied dynamics in network science and has important implications in real epidemic scenarios. Nonetheless, the dynamics of real epidemics and how it is affected by the underline structure of the infection channels are still not fully understood. Here we apply the SIR model and study analytically and numerically the epidemic spread on a recently developed spatial modular model imitating the structure of cities in a country. The model assumes that inside a city the infection channels connect many different locations, while the infection channels be…
We investigate, through a data-driven contact tracing model, the transmission of COVID-19 inside buses during distinct phases of the pandemic in a large Brazilian city. From this microscopic approach, we recover the networks of close contacts within consecutive time windows. A longitudinal comparison is then performed by upscaling the traced contacts with the transmission computed from a mean-field compartmental model for the entire city. Our results show that the effective reproduction numbers inside the buses, $Re^{bus}$, and in the city, $Re^{city}$, followed a compatible behavior during th…
Initially emerged in the Chinese city Wuhan and subsequently spread almost worldwide causing a pandemic, the SARS-CoV-2 virus follows reasonably well the SIR (Susceptible-Infectious-Recovered) epidemic model on contact networks in the Chinese case. In this paper, we investigate the prediction accuracy of the SIR model on networks also for Italy. Specifically, the Italian regions are a metapopulation represented by network nodes and the network links are the interactions between those regions. Then, we modify the network-based SIR model in order to take into account the different lockdown measu…
This study describes the dynamics of COVID-19 deaths and infections via a Monte Carlo approach. The analyses include death's data from USA, Brazil, Mexico, UK, India and Russia, which comprise the four countries with the highest number of deaths/confirmed cases, as of Aug 07, 2020, according to the WHO. The Gompertz functions were fitted to the data of weekly averaged confirmed deaths per day by mapping the $χ^2$ values. The uncertainties, variances and covariances of the model parameters were calculated by propagation. The fitted functions for the average deaths per day for USA and India have…
After their re-emergence in the last decades, dengue fever and other vector-borne diseases are a potential threat to the lives of millions of people. Based on a data set of dengue cases in the Brazilian city of Fortaleza, collected from 2011 to 2016, we study the spatio-temporal characteristics of dengue outbreaks to characterize epidemic and non-epidemic years. First, we identify regions that show a high prevalence of dengue cases and mosquito larvae in different years and also analyze their corresponding correlations. Our results show that the characteristic correlation length of the epidemi…
We consider a two-parameter discrete generalized beta (DGB) distribution and propose its universal applications to study the size-distribution of the urban agglomerations across various countries in the world, where the urban agglomerations include the small and mid-sized cities along with the heavily populated cities. Our proposition is validated by an exhaustive study with the 3 decades' census data for India and China and census data of USA for a time window of 8 years. Moreover, we have studied the city size distributions for many different countries, like Brazil, Italy, Sweden, Australia,…
We are currently living in a state of uncertainty due to the pandemic caused by the Sars-CoV-2 virus. There are several factors involved in the epidemic spreading such as the individual characteristics of each city/country. The true shape of the epidemic dynamics is a large, complex system such as most of the social systems. In this context, Complex networks are a great candidate to analyze these systems due to their ability to tackle structural and dynamical properties. Therefore this study presents a new approach to model the COVID-19 epidemic using a multi-layer complex network, where nodes…
Susceptible-Invective-Recovered (SIR) mathematical models are in high demand due to the COVID-19 pandemic. They are used in their standard formulation, or through the many variants, trying to fit and hopefully predict the number of new cases for the next days or weeks, in any place, city, or country. Such is key knowledge for the authorities to prepare for the health systems demand or to apply restrictions to slow down the infectives curve. Even when the model can be easily solved ---by the use of specialized software or by programming the numerical solution of the differential equations that …
We here propose to model active and cumulative cases data from COVID-19 by a continuous effective model based on a modified diffusion equation under Lifshitz scaling with a dynamic diffusion coefficient. The proposed model is rich enough to capture different aspects of a complex virus diffusion as humanity has been recently facing. The model being continuous it is bound to be solved analytically and/or numerically. So, we investigate two possible models where the diffusion coefficient associated with possible types of contamination are captured by some specific profiles. The active cases curve…
The city of Rio de Janeiro is one of the biggest cities in Brazil. Drug gangs and paramilitary groups called \textit{milícias} control some regions of the city where the government is not present, specially in the slums. Due to the characteristics of such two distinct groups, it was observed that the evolution of COVID-19 is different in those two regions, in comparison with the regions controlled by the government. In order to understand qualitatively those observations, we divided the city in three regions controlled by the government, by the drug gangs and by the \textit{milícias}, respecti…
Sensors can measure air quality, traffic congestion, and other aspects of urban environments. The fine-grained diagnostic information they provide could help urban managers to monitor a city's health. Recently, a `drive-by' paradigm has been proposed in which sensors are deployed on third-party vehicles, enabling wide coverage at low cost} Research on drive-by sensing has mostly focused on sensor engineering, but a key question remains unexplored: How many vehicles would be required to adequately scan a city? Here, we address this question by analyzing the sensing power of a taxi fleet. Taxis,…
We have two main aims in this paper. First we use theories of disease spreading on networks to look at the COVID-19 epidemic on the basis of individual contacts -- these give rise to predictions which are often rather different from the homogeneous mixing approaches usually used. Our second aim is to look at the role of social deprivation, again using networks as our basis, in the spread of this epidemic. We choose the city of Kolkata as a case study, but assert that the insights so obtained are applicable to a wide variety of urban environments which are densely populated and where social ine…
Currently, the global situation of COVID-19 is aggravating, pressingly calling for efficient control and prevention measures. Understanding spreading pattern of COVID-19 has been widely recognized as a vital step for implementing non-pharmaceutical measures. Previous studies investigated such an issue in large-scale (e.g., inter-country or inter-state) scenarios while urban spreading pattern still remains an open issue. Here, we fill this gap by leveraging the trajectory data of 197,808 smartphone users (including 17,808 anonymous confirmed cases) in 9 cities in China. We find a universal spre…
In this paper, a mathematical model is proposed to analyze the dynamic behavior of COVID-19. Based on inter-city networked coupling effects, a fractional-order SEIHDR system with the real-data from 23 January to 18 March, 2020 of COVID-19 is discussed. Meanwhile, hospitalized individuals and the mortality rates of three types of individuals (exposed, infected and hospitalized) are firstly taken into account in the proposed model. And infectivity of individuals during incubation is also considered in this paper. By applying least squares method and predictor-correctors scheme, the numerical sol…
The size of cities is known to play a fundamental role in social and economic life. Yet, its relation to the structure of the underlying network of human interactions has not been investigated empirically in detail. In this paper, we map society-wide communication networks to the urban areas of two European countries. We show that both the total number of contacts and the total communication activity grow superlinearly with city population size, according to well-defined scaling relations and resulting from a multiplicative increase that affects most citizens. Perhaps surprisingly, however, th…
Improved mobility not only contributes to more intensive human activities but also facilitates the spread of communicable disease, thus constituting a major threat to billions of urban commuters. In this study, we present a multi-city investigation of communicable diseases percolating among metro travelers. We use smart card data from three megacities in China to construct individual-level contact networks, based on which the spread of disease is modeled and studied. We observe that, though differing in urban forms, network layouts, and mobility patterns, the metro systems of the three cities …
The special epistemic characteristics of the COVID-19, such as the long incubation period and the infection through asymptomatic cases, put severe challenge to the containment of its outbreak. By the end of March 2020, China has successfully controlled the within-spreading of COVID-19 at a high cost of locking down most of its major cities, including the epicenter, Wuhan. Since the low accuracy of outbreak data before the mid of Feb. 2020 forms a major technical concern on those studies based on statistic inference from the early outbreak. We apply the supervised learning techniques to identif…
Since the beginning of the COVID-19 spreading, the number of studies on the epidemic models increased dramatically. It is important for policymakers to know how the disease will spread and what are the effects of the policies and environment on the spreading. In this paper, we propose two extensions to the standard SIR model: (a) we consider the prevention measures adopted based on the current severity of the infection. Those measures are adaptive and change over time; (b) multiple cities and regions are considered, with population movements between those cities and regions, while taking into …
The recent outbreak of a novel coronavirus and its rapid spread underlines the importance of understanding human mobility. Enclosed spaces, such as public transport vehicles (e.g. buses and trains), offer a suitable environment for infections to spread widely and quickly. Investigating the movement patterns and the physical encounters of individuals on public transit systems is thus critical to understand the drivers of infectious disease outbreaks. For instance previous work has explored the impact of recurring patterns inherent in human mobility on disease spread, but has not considered othe…
Given that a group of cities follows a scaling law connecting urban population with socio-economic or infrastructural metrics (transversal scaling), should we expect that each city would follow the same behavior over time (longitudinal scaling)? This assumption has important policy implications, although rigorous empirical tests have been so far hindered by the lack of suitable data. Here, we advance the debate by looking into the temporal evolution of the scaling laws for 5507 municipalities in Brazil. We focus on the relationship between population size and two urban variables, GDP and water…
We study Covid-19 spreading dynamics underlying 84 curves of daily Covid-19 infection rates pertaining to 84 districts belonging to the largest seven cities in Taiwan during her pristine surge period. Our computational developments begin with selecting and extracting 18 features from each smoothed district-specific curve. This step of computing effort allows unstructured data to be converted into structured data, with which we then demonstrate asymmetric growth and decline dynamics among all involved curves. Specifically, based on Theoretical Information measurements of conditional entropy and…
In this study, we develop the mathematical model to understand the coupling between the spreading dynamics of infectious diseases and the mobility dynamics through urban transportation systems. We first describe the mobility dynamics of the urban population as the process of leaving from home, traveling to and from the activity locations, and engaging in activities. We then embed the susceptible-exposed-infectious-recovered (SEIR) process over the mobility dynamics and develops the spatial SEIR model with travel contagion (Trans-SEIR), which explicitly accounts for contagions both during trave…
A simple contagion process describes spreading of traffic jams in urban networks
University of New South Wales (UNSW)（新南威尔士大学）；Monash University（莫纳什大学）；K.N. Toosi University of Technology（K.N.托伊西理工大学）；CSIRO（澳大利亚联邦科学与工业研究组织）；Johns Hopkins University（约翰斯·霍普金斯大学）；University of California, Berkeley（加利福尼亚大学伯克利分校）
We consider the pandemic spreading of COVID-19 in India after the outbreak of the coronavirus in Wuhan city, China. We estimate the transmission rate of the initial infecting individuals of COVID-19 in India by using the officially reported data at the early stage of the epidemic with the help of Susceptible (S), Exposed (E), Infected (I), and Removed (R) population model, the so-called SEIR dynamical model. Numerical analysis and model verification are performed to calibrate the system parameters with official public information about the number of people infected, and then to evaluate severa…
During the early months of the current COVID-19 pandemic, social-distancing measures effectively slowed disease transmission in many countries in Europe and Asia, but the same benefits have not been observed in some developing countries such as Brazil. In part, this is due to a failure to organise systematic testing campaigns at nationwide or even regional levels. To gain effective control of the pandemic, decision-makers in developing countries, particularly those with large populations, must overcome difficulties posed by an unequal distribution of wealth combined with low daily testing capa…
The interaction between cities and their respective green regions corresponds to an interesting issue that has received growing attention over the last decades. These relationships have multiple natures, ranging from providing habitat for animal life to temperature and humidity dynamics. Several methods based on area, size, shape, and distance have been considered in the literature. Given that several important contributions of green regions to urban areas involve temperature, humidity and gases (e.g.~oxygen) exchanges, which are intrinsically related to physical diffusion, it becomes particul…
Given the growth of urbanization and emerging pandemic threats, more sophisticated models are required to understand disease propagation and investigate the impacts of intervention strategies across various city types. We introduce a fully mechanistic, activity-based and highly spatio-temporally resolved epidemiological model which leverages on person-trajectories obtained from integrated mobility demand and supply models in full-scale cities. Simulating COVID-19 evolution in two full-scale cities with representative synthetic populations and mobility patterns, we analyze activity-based contac…
Bus transportation is considered as one of the most convenient and cheapest modes of public transportation in Indian cities. Due to their cost-effectiveness and wide reachability, they help a significant portion of the human population in cities to reach their destinations every day. Although from a transportation point of view they have numerous advantages over other modes of public transportation, they also pose a serious threat of contagious diseases spreading throughout the city. The presence of numerous local spatial constraints makes the process and extent of epidemic spreading extremely…
Understanding the patterns of human mobility between cities has various applications from transport engineering to spatial modeling of the spreading of contagious diseases. We adopt a city-centric, data-driven perspective to quantify such patterns and introduce the mobility signature as a tool for understanding how a city (or a region) is embedded in the wider mobility network. We demonstrate the potential of the mobility signature approach through two applications that build on mobile-phone-based data from Finland. First, we use mobility signatures to show that the well-known radiation model …
In this study, we use US county-level COVID-19 case data from January 21-March 25, 2020 to study the exponential behavior of case growth at the metropolitan scale. In particular, we assume that all localized outbreaks are in an early stage (either undergoing exponential growth in the number of cases, or are effectively contained) and compare the explanatory performance of different simple exponential and linear growth models for different metropolitan areas. While we find no relationship between city size and exponential growth rate (directly related to $R0$, which denotes average the number o…
Given its wide-ranging and long-lasting impacts, COVID-19, especially its spatial spreading dynamics has received much attention. Knowledge of such dynamics helps public health professionals and city managers devise and deploy efficient contact-tracing and treatment measures. However, most existing studies focus on aggregate mobility flows and have rarely exploited the widely available disaggregate-level human mobility data. In this paper, we propose a Personalized PageRank (PPR) method to estimate COVID-19 transmission risks based on a bipartite network of people and locations. The method inc…
Northeast Normal University（东北师范大学）；University of Massachusetts（马萨诸塞大学）
The rapid spread of COVID-19 disease has had a significant impact on the world. In this paper, we study COVID-19 data interpretation and visualization using open-data sources for 351 cities and towns in Massachusetts from December 6, 2020 to September 25, 2021. Because cities are embedded in rather complex transportation networks, we construct the spatio-temporal dynamic graph model, in which the graph attention neural network is utilized as a deep learning method to learn the pandemic transition probability among major cities in Massachusetts. Using the spectral graph wavelet transform (SGWT)…
We consider the pandemic spreading of COVID-19 for some selected countries after the outbreak of the coronavirus in Wuhan City, China. We estimated the infection rate and the initial infected individuals of COVID-19 by using the officially reported data at the early stage of the epidemic for the susceptible (S), infectable (I), quarantined (Q), and the cofirmed recovered (Rk) population model, so called SIQRk model. In the reported data we know the quarantined cases and the recovered cases. We can not know the recovered cases from the asymptomatic cases. In the SIQRk model we can estimated the…
For the first time the systems of cities in seven countries or regions among the largest in the world (China, India, Brazil, Europe, the Former Soviet Union (FSU), the United States and South Africa) are made comparable through the building of spatio-temporal standardised statistical databases. We first explain the concept of a generic evolutionary urban unit ("city") and its necessary adaptations to the information provided by each national statistical system. Second, the hierarchical structure and the urban growth process are compared at macro-scale for the seven countries with reference to …
Transportation systems can be conceptualized as an instrument of spreading people and resources over the territory, playing an important role in developing sustainable cities. The current rationale of transport provision is based on population demand, disregarding land use and socioeconomic information. To meet the challenge to promote a more equitable resource distribution, this work aims at identifying and describing patterns of urban services supply, their accessibility, and household income. By using a multidimensional approach, the spatial inequalities of a large city of the global south …
Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences（中国科学院深圳先进技术研究院）；University of Science and Technology of China（中国科学技术大学）
Infectious diseases usually originate from a specific location within a city. Due to the heterogenous distribution of population and public facilities, and the structural heterogeneity of human mobility network embedded in space, infectious diseases break out at different locations would cause different transmission risk and control difficulty. This study aims to investigate the impact of initial outbreak locations on the risk of spatiotemporal transmission and reveal the driving force behind high-risk outbreak locations. First, integrating mobile phone location data, we built a SLIR (suscepti…
